Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g2989 AGTTTGCTCGACGGCAAGTACGAATTAGGCCGGCTTCTAGGGCACGGAACTTTCGCTAAGGTCTACCATGCTCGGAATCTGCGGACGGGAAAGAGCGTGGCGATGAAGGTGGTCGGGAAGGAGAAGATTATCAAAGTCGGCATGACGGAGCAGATCAAGAGAGAAATCTCTGTTATGAAAATGGTGAAGCATCCGAATATTGTGGAGCTCCACGAGGTGATGGCGAGTAAATCGAAGATCTACTTCGCCATGGAGCTTGTCAGAGGCGGTGAGCTGTTCTCCAAAATTGCTAAAGGTCGATTGCGAGAGGATGTGGCTAGGGTTTACTTTCAGCAATTGATCTCTGCAATCGATTTCTGCCATAGCCGCGGAGTTTACCACCGGGACCTGAAACCAGAGAATCTCCTCCTCGACGAAGACGGTAACCTTAAGGTTACCGATTTCGGCCTCACGGCGTTCGCAGAGCACTTGAAGCAAGACGGATTGCTGCACACGACGTGCGGAACTCCGGCGTACGTCGCGCCGGAGGTCATCGGAAAACAGGGCTATGACGGCGCGAAGGCCGATCTGTGGTCTTGTGGAGTCATCCTCTATGTTCTACTCGCCGGATACCTTCCGTTTCAGGACGACAACATGGTGGCGATGTACCGGAAAATTTACAGAGGCGACTTCAAGTGCCCGCCGTGGTTCTCCCCCGAGGCCCGCCGGCTGATCACGAAGCTCCTCGACCCGAACCCGGTGACGCGAATCGGAATCGCGAAGATTATGGCGTCGTCGTGGTTCAAGAAATCGGTACCGAAGACTGTGATTACGAAGGAGGAGCAAGAACAAAATCAAATGGAGGAGAACTTCACGAAATCGAAGCAACCGGCGGAGACATTAAACGCGTTCCACATAATTTCTCTATCGGAAGGGTTCGATCTGTCGCCGCTGTTCGAGGAGAAGAAGAGGGAGGAGAAAGAGGAGTTGAGATTCGCGACGTCGTCTCCGGCGAGCAGCGTGATATCGAAACTGGAGGAGGTGGCGAAGGCGGTGAAATTCGACGTGAAGAAGAGCGAGTGCAGGGTCCGGTTGCAGGGGCAAGAGAAGGGGCGGAAGGGGAAATTGGCAATTGCGGCGGATATATTCGCCGTAACGCCGTCGTTTCTGATGGTGGAGGTGAAGAAGGACAACGGCGACACGTTGGAGTATAAGCAGTTCTGCAGCAAGGAGCTCCGGCCGGCGCTGAAGGACATCGTGTGGACT 1245 54.06 SLLDGKYELGRLLGHGTFAKVYHARNLRTGKSVAMKVVGKEKIIKVGMTEQIKREISVMKMVKHPNIVELHEVMASKSKIYFAMELVRGGELFSKIAKGRLREDVARVYFQQLISAIDFCHSRGVYHRDLKPENLLLDEDGNLKVTDFGLTAFAEHLKQDGLLHTTCGTPAYVAPEVIGKQGYDGAKADLWSCGVILYVLLAGYLPFQDDNMVAMYRKIYRGDFKCPPWFSPEARRLITKLLDPNPVTRIGIAKIMASSWFKKSVPKTVITKEEQEQNQMEENFTKSKQPAETLNAFHIISLSEGFDLSPLFEEKKREEKEELRFATSSPASSVISKLEEVAKAVKFDVKKSECRVRLQGQEKGRKGKLAIAADIFAVTPSFLMVEVKKDNGDTLEYKQFCSKELRPALKDIVWT 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 32521646 32522890 + MC08g2372 Mch8g2989 696610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g2989 415 ProSiteProfiles NAF domain profile. 289 313 IPR018451 GO:0007165(InterPro)
Mch8g2989 415 FunFam Non-specific serine/threonine protein kinase 1 289 - -
Mch8g2989 415 FunFam Non-specific serine/threonine protein kinase 2 86 - -
Mch8g2989 415 CDD CIPK_C 295 410 - -
Mch8g2989 415 SMART serkin_6 7 261 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch8g2989 415 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch8g2989 415 ProSitePatterns Protein kinases ATP-binding region signature. 13 40 IPR017441 GO:0005524(InterPro)
Mch8g2989 415 CDD STKc_SnRK3 6 260 - -
Mch8g2989 415 Pfam Protein kinase domain 7 261 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch8g2989 415 Gene3D Transferase(Phosphotransferase) domain 1 89 289 - -
Mch8g2989 415 ProSiteProfiles Protein kinase domain profile. 7 261 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch8g2989 415 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 2 409 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Mch8g2989 415 Gene3D Phosphorylase Kinase; domain 1 5 88 - -
Mch8g2989 415 FunFam Non-specific serine/threonine protein kinase 273 414 - -
Mch8g2989 415 Pfam NAF domain 292 351 IPR004041 GO:0007165(InterPro)
Mch8g2989 415 Gene3D Kinase associated domain 1, KA1 290 415 - -
Mch8g2989 415 SUPERFAMILY Protein kinase-like (PK-like) 4 282 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1930 Mch-Chr1:19151726 Mch8g2989 Mch-Chr8:32521646 1.01E-180 dispersed
Mch2g0796 Mch-Chr2:5490155 Mch8g2989 Mch-Chr8:32521646 9.57E-150 dispersed
Mch3g1072 Mch-Chr3:14233192 Mch8g2989 Mch-Chr8:32521646 2.10E-191 dispersed
Mch6g0715 Mch-Chr6:4914990 Mch8g2989 Mch-Chr8:32521646 4.38E-136 dispersed
Mch7g1020 Mch-Chr7:14380900 Mch8g2989 Mch-Chr8:32521646 3.50E-122 dispersed
Mch8g0293 Mch-Chr8:2023557 Mch8g2989 Mch-Chr8:32521646 3.68E-129 dispersed
Mch8g1066 Mch-Chr8:7538333 Mch8g2989 Mch-Chr8:32521646 4.16E-166 dispersed
Mch8g2446 Mch-Chr8:27426918 Mch8g2989 Mch-Chr8:32521646 1.64E-73 dispersed
Mch8g2989 Mch-Chr8:32521646 Mch9g1883 Mch-Chr9:20482124 1.68E-43 dispersed
Mch8g2989 Mch-Chr8:32521646 Mch6g0631 Mch-Chr6:4301878 1.07E-264 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77643 PF00069 Pkinase 2.00E-73 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g2989 - - - 0.0