Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch8g2989 | AGTTTGCTCGACGGCAAGTACGAATTAGGCCGGCTTCTAGGGCACGGAACTTTCGCTAAGGTCTACCATGCTCGGAATCTGCGGACGGGAAAGAGCGTGGCGATGAAGGTGGTCGGGAAGGAGAAGATTATCAAAGTCGGCATGACGGAGCAGATCAAGAGAGAAATCTCTGTTATGAAAATGGTGAAGCATCCGAATATTGTGGAGCTCCACGAGGTGATGGCGAGTAAATCGAAGATCTACTTCGCCATGGAGCTTGTCAGAGGCGGTGAGCTGTTCTCCAAAATTGCTAAAGGTCGATTGCGAGAGGATGTGGCTAGGGTTTACTTTCAGCAATTGATCTCTGCAATCGATTTCTGCCATAGCCGCGGAGTTTACCACCGGGACCTGAAACCAGAGAATCTCCTCCTCGACGAAGACGGTAACCTTAAGGTTACCGATTTCGGCCTCACGGCGTTCGCAGAGCACTTGAAGCAAGACGGATTGCTGCACACGACGTGCGGAACTCCGGCGTACGTCGCGCCGGAGGTCATCGGAAAACAGGGCTATGACGGCGCGAAGGCCGATCTGTGGTCTTGTGGAGTCATCCTCTATGTTCTACTCGCCGGATACCTTCCGTTTCAGGACGACAACATGGTGGCGATGTACCGGAAAATTTACAGAGGCGACTTCAAGTGCCCGCCGTGGTTCTCCCCCGAGGCCCGCCGGCTGATCACGAAGCTCCTCGACCCGAACCCGGTGACGCGAATCGGAATCGCGAAGATTATGGCGTCGTCGTGGTTCAAGAAATCGGTACCGAAGACTGTGATTACGAAGGAGGAGCAAGAACAAAATCAAATGGAGGAGAACTTCACGAAATCGAAGCAACCGGCGGAGACATTAAACGCGTTCCACATAATTTCTCTATCGGAAGGGTTCGATCTGTCGCCGCTGTTCGAGGAGAAGAAGAGGGAGGAGAAAGAGGAGTTGAGATTCGCGACGTCGTCTCCGGCGAGCAGCGTGATATCGAAACTGGAGGAGGTGGCGAAGGCGGTGAAATTCGACGTGAAGAAGAGCGAGTGCAGGGTCCGGTTGCAGGGGCAAGAGAAGGGGCGGAAGGGGAAATTGGCAATTGCGGCGGATATATTCGCCGTAACGCCGTCGTTTCTGATGGTGGAGGTGAAGAAGGACAACGGCGACACGTTGGAGTATAAGCAGTTCTGCAGCAAGGAGCTCCGGCCGGCGCTGAAGGACATCGTGTGGACT | 1245 | 54.06 | SLLDGKYELGRLLGHGTFAKVYHARNLRTGKSVAMKVVGKEKIIKVGMTEQIKREISVMKMVKHPNIVELHEVMASKSKIYFAMELVRGGELFSKIAKGRLREDVARVYFQQLISAIDFCHSRGVYHRDLKPENLLLDEDGNLKVTDFGLTAFAEHLKQDGLLHTTCGTPAYVAPEVIGKQGYDGAKADLWSCGVILYVLLAGYLPFQDDNMVAMYRKIYRGDFKCPPWFSPEARRLITKLLDPNPVTRIGIAKIMASSWFKKSVPKTVITKEEQEQNQMEENFTKSKQPAETLNAFHIISLSEGFDLSPLFEEKKREEKEELRFATSSPASSVISKLEEVAKAVKFDVKKSECRVRLQGQEKGRKGKLAIAADIFAVTPSFLMVEVKKDNGDTLEYKQFCSKELRPALKDIVWT | 415 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 32521646 | 32522890 | + | MC08g2372 | Mch8g2989 | 696610 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch8g2989 | 415 | ProSiteProfiles | NAF domain profile. | 289 | 313 | IPR018451 | GO:0007165(InterPro) | |
Mch8g2989 | 415 | FunFam | Non-specific serine/threonine protein kinase | 1 | 289 | - | - | |
Mch8g2989 | 415 | FunFam | Non-specific serine/threonine protein kinase | 2 | 86 | - | - | |
Mch8g2989 | 415 | CDD | CIPK_C | 295 | 410 | - | - | |
Mch8g2989 | 415 | SMART | serkin_6 | 7 | 261 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Mch8g2989 | 415 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 125 | 137 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Mch8g2989 | 415 | ProSitePatterns | Protein kinases ATP-binding region signature. | 13 | 40 | IPR017441 | GO:0005524(InterPro) | |
Mch8g2989 | 415 | CDD | STKc_SnRK3 | 6 | 260 | - | - | |
Mch8g2989 | 415 | Pfam | Protein kinase domain | 7 | 261 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Mch8g2989 | 415 | Gene3D | Transferase(Phosphotransferase) domain 1 | 89 | 289 | - | - | |
Mch8g2989 | 415 | ProSiteProfiles | Protein kinase domain profile. | 7 | 261 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Mch8g2989 | 415 | PANTHER | CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED | 2 | 409 | - | GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) | |
Mch8g2989 | 415 | Gene3D | Phosphorylase Kinase; domain 1 | 5 | 88 | - | - | |
Mch8g2989 | 415 | FunFam | Non-specific serine/threonine protein kinase | 273 | 414 | - | - | |
Mch8g2989 | 415 | Pfam | NAF domain | 292 | 351 | IPR004041 | GO:0007165(InterPro) | |
Mch8g2989 | 415 | Gene3D | Kinase associated domain 1, KA1 | 290 | 415 | - | - | |
Mch8g2989 | 415 | SUPERFAMILY | Protein kinase-like (PK-like) | 4 | 282 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch1g1930 | Mch-Chr1:19151726 | Mch8g2989 | Mch-Chr8:32521646 | 1.01E-180 | dispersed | |
Mch2g0796 | Mch-Chr2:5490155 | Mch8g2989 | Mch-Chr8:32521646 | 9.57E-150 | dispersed | |
Mch3g1072 | Mch-Chr3:14233192 | Mch8g2989 | Mch-Chr8:32521646 | 2.10E-191 | dispersed | |
Mch6g0715 | Mch-Chr6:4914990 | Mch8g2989 | Mch-Chr8:32521646 | 4.38E-136 | dispersed | |
Mch7g1020 | Mch-Chr7:14380900 | Mch8g2989 | Mch-Chr8:32521646 | 3.50E-122 | dispersed | |
Mch8g0293 | Mch-Chr8:2023557 | Mch8g2989 | Mch-Chr8:32521646 | 3.68E-129 | dispersed | |
Mch8g1066 | Mch-Chr8:7538333 | Mch8g2989 | Mch-Chr8:32521646 | 4.16E-166 | dispersed | |
Mch8g2446 | Mch-Chr8:27426918 | Mch8g2989 | Mch-Chr8:32521646 | 1.64E-73 | dispersed | |
Mch8g2989 | Mch-Chr8:32521646 | Mch9g1883 | Mch-Chr9:20482124 | 1.68E-43 | dispersed | |
Mch8g2989 | Mch-Chr8:32521646 | Mch6g0631 | Mch-Chr6:4301878 | 1.07E-264 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
77643 | PF00069 | Pkinase | 2.00E-73 | CL0016 | Mch | PK |
Pathway information
