Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g2990 ATGAGACTCACCAACTCCCTCTCCGACCTCCATAGCCACCACCACCGCAACCGGCGGCCGGAGTCCGACGCTCCTCAACTCCAGAGCCACCTTCACAGCTCCCACTTCGATCCCCCTACCTTCTCCCACGACGACTTCTTCGACCAAATGCTTTCCACCATCCCCCCTTCCTGGGAACTCCCCCCCTCCGGAGCCCTGTCCGACGACGCTCCACCGCCGCCGCCGCCGCCGCAGCCTAATCCTGATAATACCGCGTTTCAGTTCGATGAGTCGTCCTCTGCCACTAATCTGGCTTCCAAGCTCAGCGGCTACCAGATCAGCGAGACGACTGCGAAAATGGCGATGACGATGCTTCAGCAGCAGTTACTGATGTCGAGAGCGATGGTGACTGCCGCCGATTCAGGACTCCTTCCAATGCCTGGTGCGAACCTTGAGGATTCTTCGTCTTTCAAATGCCCTAATCCGGGGAATTCACAGAAACAGAGCTTCGGAGCTCCAGTAGCAGTCAATAACCCACCTCCGTCTAACGCTCCGGCGGGGCATGGTTCCGGCGGTGCTGCACCGGCTCAGCCTCGACAAAGAGTCAGAGCTCGCAGAGGACAAGCCACTGATCCTCACAGTATAGCGGAAAGACTACGAAGAGAGCGAATTGCAGAGAGAATGAAAGCTTTACAGGAACTGGTTCCAAACGCTAACAAGACAGACAAGGCTTCAATGCTGGATGAGATCATCGACTACGTGAAATTCCTCCAGCTTCAAGTCAAAGTTCTGAGCATGAGCAGGTTGGGCGGTGCCACTGCTGCCATGCCTTCCCTTGTAGCTGATATTTCCTCTGAGGGTGGAACTGACTGTAACCTGTCCAACGGAGCCGGCGGGGCCGCCGGACGGACCTCCGCCGGTGCTCCCTCGACTAACGACGCCATGACGGTGACGGAGCACCAGGTGGTGAAGCTCATGGAGGAAGACATGGGCTCCGCCATGCAGTACTTACAAGGCAAAGGCCTCTGCCTGATGCCCATCTCCCTGGCCACCGCTATCTCCACCGCCACTTGTCACAGCCGCCCGATCGTGGCGTCGAAGGGCGGCGGAGGAGAAGGCCCTACCTCCCCCGGCATGTCGTCGTTGACCGTTCAGTCAACCACCTTGGGTAACGGCGCGATTAACAGAGCCGTCAAAGATGCCGCCTCCGTTTCGCGGCCGTGA 1203 58.52 MRLTNSLSDLHSHHHRNRRPESDAPQLQSHLHSSHFDPPTFSHDDFFDQMLSTIPPSWELPPSGALSDDAPPPPPPPQPNPDNTAFQFDESSSATNLASKLSGYQISETTAKMAMTMLQQQLLMSRAMVTAADSGLLPMPGANLEDSSSFKCPNPGNSQKQSFGAPVAVNNPPPSNAPAGHGSGGAAPAQPRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGATAAMPSLVADISSEGGTDCNLSNGAGGAAGRTSAGAPSTNDAMTVTEHQVVKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRPIVASKGGGGEGPTSPGMSSLTVQSTTLGNGAINRAVKDAASVSRP 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 32541002 32546240 - MC08g2373 Mch8g2990 696611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g2990 400 MobiDBLite consensus disorder prediction 140 208 - -
Mch8g2990 400 MobiDBLite consensus disorder prediction 66 82 - -
Mch8g2990 400 Pfam Helix-loop-helix DNA-binding domain 206 251 IPR011598 GO:0046983(InterPro)
Mch8g2990 400 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 201 250 IPR011598 GO:0046983(InterPro)
Mch8g2990 400 MobiDBLite consensus disorder prediction 357 384 - -
Mch8g2990 400 Gene3D - 196 258 IPR036638 GO:0046983(InterPro)
Mch8g2990 400 MobiDBLite consensus disorder prediction 147 169 - -
Mch8g2990 400 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 199 260 IPR036638 GO:0046983(InterPro)
Mch8g2990 400 FunFam Transcription factor bHLH66 198 263 - -
Mch8g2990 400 MobiDBLite consensus disorder prediction 369 384 - -
Mch8g2990 400 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 67 345 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Mch8g2990 400 MobiDBLite consensus disorder prediction 1 87 - -
Mch8g2990 400 SMART finulus 207 256 IPR011598 GO:0046983(InterPro)
Mch8g2990 400 MobiDBLite consensus disorder prediction 7 25 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g1134 Mch-Chr6:8509112 Mch8g2990 Mch-Chr8:32541002 2.90E-12 dispersed
Mch6g2866 Mch-Chr6:29812135 Mch8g2990 Mch-Chr8:32541002 1.07E-15 dispersed
Mch8g0636 Mch-Chr8:4576611 Mch8g2990 Mch-Chr8:32541002 5.57E-16 dispersed
Mch8g2990 Mch-Chr8:32541002 Mch9g0913 Mch-Chr9:7244657 3.16E-49 dispersed
Mch8g2990 Mch-Chr8:32541002 Mch6g0634 Mch-Chr6:4333488 3.21E-121 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43954 PF00010 HLH 1.50E-09 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g2990 - - - 0.0