Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g3003 ATGTGTGTGACGGAAGCAGAACAGGTTGGACCAGAGAGGGCAACTTCTGGGAGTAATAATACCAAGCCATGGCCTATGCATTGTGAATTTTTGCAGAATCAGATGGGAAATCGAGAGAAAGAGCCTGCTCTCTCTGGAACTAGCGACCGAAGCCGCTCTGGGAATTCTTTTCCTCTTGAAAGCATTTCTGAGGATGCTGCAGTTATAGACAGAAAAGAGAACACATCTACATTTGTCCCTGCACTTAGATCGGGAGAATGGTCTGATATCGGAAAGCGTCCTTATATGGAGGACACTCATGTATGCATTCATGACATGGCTAAGAATTTCGGCTGCACTTTTCTCAATGAGGATGCTGTCTCCTTCTATGGTGTATTTGATGGCCATGGCGGAAAAGGCGCTGCACAATTTGTTCGTGATCACTTGCCGAGAGTCATTGTCGAAGATTCCGACTTTCCTTTAGAGCTTGAAAAGGTGGTTACAAGGTCATTTATGGAGACTGATGCAGCTTTTGCTAGATCTTGCAATCTTGAGACATCTCTATCATCTGGCACAACTGCACTTACTGCAATGATATTTGGAAGGTCTTTGCTCGTAGCAAACGCTGGTGATTGCCGAGCAGTATTGTCAAGACAAGGCTGTGCAATTGAAATGTCTAAAGACCACAGGCCATGCTGCACAAAAGAAAAAAAGCGAATCGAGGCTTTGGGCGGATTCATCGACAACGATTATTATCTAAACGGCCTGCTCGGGGTCACACGTGCAATAGGAGATTGGCATCTTGAAGGAATGAAGGAAATGAGCGAAAGAGGTGGACCATTAAGCGCTGAACCCGAACTCAGATTAATGACATTGACGAAGGAGGACGAGTTCTTGATCATAGGCAGCGATGGAATGTGGGACGTCTTCATGAACCAAAACGCGGTCGACTTTGCTCGGAGGAGGCTCCAAGAGCACAATGATGTGAAAGTATGCTGCAAGGAAATGGTAGAGGAAGCCATAAAGAGGGGAGCAACAGACAATTTGACAGTAGTTTTGGTAAGCTTCCACTTGGAGCCACCTCAACCAGTAGTTTTTCAGAGGCCAAGATTTAGAAGAAGCATTTCTGCAGAGGGGCTTCAGAACCTCAAATTTCTGCTAGAAGGATAG 1149 45.69 MCVTEAEQVGPERATSGSNNTKPWPMHCEFLQNQMGNREKEPALSGTSDRSRSGNSFPLESISEDAAVIDRKENTSTFVPALRSGEWSDIGKRPYMEDTHVCIHDMAKNFGCTFLNEDAVSFYGVFDGHGGKGAAQFVRDHLPRVIVEDSDFPLELEKVVTRSFMETDAAFARSCNLETSLSSGTTALTAMIFGRSLLVANAGDCRAVLSRQGCAIEMSKDHRPCCTKEKKRIEALGGFIDNDYYLNGLLGVTRAIGDWHLEGMKEMSERGGPLSAEPELRLMTLTKEDEFLIIGSDGMWDVFMNQNAVDFARRRLQEHNDVKVCCKEMVEEAIKRGATDNLTVVLVSFHLEPPQPVVFQRPRFRRSISAEGLQNLKFLLEG 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 32638254 32643266 + MC08g2385 Mch8g3003 696624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g3003 382 SMART PP2C_4 73 347 IPR001932 -
Mch8g3003 382 MobiDBLite consensus disorder prediction 11 27 - -
Mch8g3003 382 CDD PP2Cc 83 349 IPR001932 -
Mch8g3003 382 Gene3D - 65 352 IPR036457 -
Mch8g3003 382 MobiDBLite consensus disorder prediction 1 59 - -
Mch8g3003 382 FunFam Probable protein phosphatase 2C 22 67 352 - -
Mch8g3003 382 ProSitePatterns PPM-type phosphatase domain signature. 122 130 IPR000222 GO:0043169(InterPro)
Mch8g3003 382 Pfam Protein phosphatase 2C 95 341 IPR001932 -
Mch8g3003 382 ProSiteProfiles PPM-type phosphatase domain profile. 83 349 IPR001932 -
Mch8g3003 382 PANTHER PROTEIN PHOSPHATASE 2C 67 349 IPR015655 GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0006470(PANTHER)
Mch8g3003 382 SUPERFAMILY PP2C-like 72 350 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g0702 Mch-Chr5:4757016 Mch8g3003 Mch-Chr8:32638254 2.45E-07 dispersed
Mch5g1306 Mch-Chr5:13906182 Mch8g3003 Mch-Chr8:32638254 2.51E-36 dispersed
Mch8g3003 Mch-Chr8:32638254 Mch9g0471 Mch-Chr9:3484858 3.23E-35 dispersed
Mch11g0044 Mch-Chr11:286097 Mch8g3003 Mch-Chr8:32638254 6.19E-103 transposed
Mch4g2679 Mch-Chr4:26751110 Mch8g3003 Mch-Chr8:32638254 9.18E-38 transposed
Mch6g0403 Mch-Chr6:2658264 Mch8g3003 Mch-Chr8:32638254 6.12E-29 transposed
Mch7g1263 Mch-Chr7:16115789 Mch8g3003 Mch-Chr8:32638254 3.06E-79 transposed
Mch9g0624 Mch-Chr9:4663637 Mch8g3003 Mch-Chr8:32638254 1.90E-85 transposed
Mch11g0493 Mch-Chr11:3129560 Mch8g3003 Mch-Chr8:32638254 3.26E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43956 PF00481 PP2C 4.30E-66 CL0238 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g3003 K14803 - csv:101210349 714.916