Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch8g3014 | CTTCAGACGCGCGTGGTTAACGAGAACTCAGATGACCCATTTTCCCGCCAAGTGCTTCCTTCCCGCCAAAACTATTGCGCTCATAAGCCTTCGCCTCCATTGCTAAACCCAGAAGAAAAAACTGAAAGCTCCGTCGAGAGAGAAGGGTTTCGGTGTTTTAGAGGGAAAAGCTTATTCTTAGACGCAGAAATGTCGGGCTGGGATGAAGGGGGAATCTACTACAGCGACCAGGCGCAATCCCTCGGAGACGGAACCGGCGGCGGCCGCGCCGGAGATGCCGAAGAGAAGGCCACTCATCACTCGGTCCTTCGGAAATTCAAGGAGTTCATCCGTGGATTTGAAGCCGACAAGAATGTCTTCCCCTACAGAGAGAGCCTTCTTCATAACCCGAAATTTCTTCGCGTTGATATGGAGGACGTTAACGCTTTTGACTCCGATCTTCCGGCGAAGCTTCGATCTGCTCCTGCCGATTACTTGCCCTTGTTTGAGACTGCTGCAGCGGAGGTTTTAATGAATCTCAAGACGAAGGTGGCCGGTGAGACTGGAGAAATGGTGGAGCCCGTGCCCGGGGATGTTCAAATTCTTCTAACGTCGAAGGAGGATCCAGTCTCCATGCGGTCCCTTGGGGCTCAATATATTTCAAAACTTGTTAAGATATCTGGAATCACAATAGCTGCGTCAAGGACCAAGGCAAAGGCAACCTATGTGACCTTATTGTGCAAGAATTGTAGAAGTACCGTAAGAGTTCCATGTCGGCCAGGACTTGGAGGGGCAATTGTTCCTCGATCATGTAATCATATGCCCCAGGCGGGAGAAGAACCATGCCCACTGGATCCTTGGATTGTGGTTCCTGACAAGAGCATGTATGTTGATCAACAGACATTAAAACTGCAGGAAAACCCAGAAGATGTTCCAACTGGGGAACTTCCTAGGAACATGCTTCTATCGGTAGATCGCCATCTTGTTCAAACAATTGTTCCAGGCACTAGATTGACCATCATGGGGATATATAGTATTTATCAAGCTGCCAATTCTTCCGCATCCCACAAAGGAGCAGTTGCAATTAGACAGCCTTATATTAGGGTTGTAGGAATTGAAGAATCTAATGAAGCCAACTCTCGAGGCCCTGCATCTTTCACAACAGAAGATATAGAAGAGTTCAAAAAGTTTGCAGCAGAGCCTGATGTGTATAAAAGCATATGTTCAAAGATTGCCCCCTCTATATTTGGTCATGATGATGTGAAGAAGGCTGTAGCTTGTCTTCTGTTCGGAGGATCCAGGAAGAATTTGCCGGATGGGGTTAAGTTAAGAGGTGATATTAATGTATTACTTTTGGGGGACCCGTCTACAGCTAAGTCCCAGTTTCTCAAGTTTGTTGAGAAGACAGCTCCAGTTGCTGTTTATACTTCTGGAAAAGGTTCATCAGCTGCTGGTCTTACAGCTTCAGTGATACGAGATAGCAGCTCTCGAGAGTTCTATCTTGAAGGAGGTGCAATGGTTCTGGCTGATGGAGGTGTTGTCTGCATTGATGAGTTTGACAAAATGAGATCAGAGGATAGAGTTGCTATCCATGAAGCCATGGAACAACAGACAATATCAATCGCAAAAGCCGGAATAACAACGGTTCTTAATTCCAGAACCTCAGTGCTTGCAGCTGCTAATCCTCCATCAGGACGTTATGATGACCTTAAGACGGCACAGGATAACATTGATTTGCAGACAACAATTCTCTCAAGATTTGATCTAATTTTCATTGTGAAAGATATAAGGATGTACAGTCAAGACAAGATTATAGCAAGCCATATAATAAAAGTTCATGCATCTGCTGATGCAACCTTGGGTGAAAATAGAGCTTCTAAAGAAGAGAATTGGTTAAAGAGGTATATTCAATATTGTCGAACTAAATGCCATCCCCGTTTGACAGAGTCTGCATCCACAATGCTGCAGAATAGTTATGTTAAAATCAGACAGGACATGAGACAACAAGCAAATGAAACAGGGGAGGCTGCTGCAATTCCGATTACAGTAAGACAGCTGGAAGCTATTGTAAGGTTAAGCGAGGCACTTGCGAAAATGAAGTTGTCCCATGTTGCCACCGAGGAAAATGTGCAGGAAGCTATTAGACTTTTTACCGTGTCCACAATGGACGCTGCACGCTCTGGGATTCATCAGCAAGTAAATCTGACTCCTGAAGTGGCTAATGAAATAAAGCAAGCGGAAACACAGATAAAGAGAAGAATAGGAATTGGCAACCACATATCCGAGAGAAGGCTGATTGACGAGCTCACAAGAATGGGGATGAACGAGTCAATTGTGCGAAGAGCTCTGATTATTATGCACCAGAGAGATGAAGTTGAATATAAAAGAGAAAGGCGTGTCATTTACCGCAAGGCATGA | 2397 | 45.14 | LQTRVVNENSDDPFSRQVLPSRQNYCAHKPSPPLLNPEEKTESSVEREGFRCFRGKSLFLDAEMSGWDEGGIYYSDQAQSLGDGTGGGRAGDAEEKATHHSVLRKFKEFIRGFEADKNVFPYRESLLHNPKFLRVDMEDVNAFDSDLPAKLRSAPADYLPLFETAAAEVLMNLKTKVAGETGEMVEPVPGDVQILLTSKEDPVSMRSLGAQYISKLVKISGITIAASRTKAKATYVTLLCKNCRSTVRVPCRPGLGGAIVPRSCNHMPQAGEEPCPLDPWIVVPDKSMYVDQQTLKLQENPEDVPTGELPRNMLLSVDRHLVQTIVPGTRLTIMGIYSIYQAANSSASHKGAVAIRQPYIRVVGIEESNEANSRGPASFTTEDIEEFKKFAAEPDVYKSICSKIAPSIFGHDDVKKAVACLLFGGSRKNLPDGVKLRGDINVLLLGDPSTAKSQFLKFVEKTAPVAVYTSGKGSSAAGLTASVIRDSSSREFYLEGGAMVLADGGVVCIDEFDKMRSEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKTAQDNIDLQTTILSRFDLIFIVKDIRMYSQDKIIASHIIKVHASADATLGENRASKEENWLKRYIQYCRTKCHPRLTESASTMLQNSYVKIRQDMRQQANETGEAAAIPITVRQLEAIVRLSEALAKMKLSHVATEENVQEAIRLFTVSTMDAARSGIHQQVNLTPEVANEIKQAETQIKRRIGIGNHISERRLIDELTRMGMNESIVRRALIIMHQRDEVEYKRERRVIYRKA | 798 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 32749499 | 32755953 | + | MC08g2396 | Mch8g3014 | 696635 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch8g3014 | 798 | ProSitePatterns | MCM family signature. | 505 | 513 | IPR018525 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro) | |
| Mch8g3014 | 798 | Gene3D | - | 377 | 732 | IPR027417 | - | |
| Mch8g3014 | 798 | FunFam | DNA helicase | 377 | 728 | - | - | |
| Mch8g3014 | 798 | Gene3D | - | 205 | 340 | IPR012340 | - | |
| Mch8g3014 | 798 | MobiDBLite | consensus disorder prediction | 1 | 43 | - | - | |
| Mch8g3014 | 798 | FunFam | DNA helicase | 232 | 290 | - | - | |
| Mch8g3014 | 798 | Gene3D | - | 98 | 184 | - | - | |
| Mch8g3014 | 798 | Pfam | MCM P-loop domain | 383 | 606 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Mch8g3014 | 798 | Pfam | MCM N-terminal domain | 104 | 180 | IPR027925 | - | |
| Mch8g3014 | 798 | CDD | MCM5 | 400 | 713 | - | - | |
| Mch8g3014 | 798 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 437 | 452 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Mch8g3014 | 798 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 525 | 538 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Mch8g3014 | 798 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 549 | 561 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Mch8g3014 | 798 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 576 | 584 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Mch8g3014 | 798 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 497 | 511 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Mch8g3014 | 798 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 95 | 786 | IPR031327 | GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006270(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)|GO:0043138(PANTHER) | |
| Mch8g3014 | 798 | SUPERFAMILY | Nucleic acid-binding proteins | 105 | 362 | IPR012340 | - | |
| Mch8g3014 | 798 | Gene3D | - | 232 | 290 | - | - | |
| Mch8g3014 | 798 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
| Mch8g3014 | 798 | FunFam | DNA helicase | 97 | 185 | - | - | |
| Mch8g3014 | 798 | Pfam | MCM OB domain | 205 | 340 | IPR033762 | - | |
| Mch8g3014 | 798 | Pfam | MCM AAA-lid domain | 624 | 713 | IPR041562 | - | |
| Mch8g3014 | 798 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 406 | 714 | IPR027417 | - | |
| Mch8g3014 | 798 | ProSiteProfiles | MCM family domain profile. | 396 | 602 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Mch8g3014 | 798 | Pfam | MCM5, C-terminal domain | 738 | 796 | IPR054125 | - | |
| Mch8g3014 | 798 | PRINTS | Mini-chromosome maintenance (MCM) protein 5 signature | 356 | 368 | IPR008048 | GO:0003688(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Mch8g3014 | 798 | PRINTS | Mini-chromosome maintenance (MCM) protein 5 signature | 632 | 647 | IPR008048 | GO:0003688(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Mch8g3014 | 798 | PRINTS | Mini-chromosome maintenance (MCM) protein 5 signature | 206 | 221 | IPR008048 | GO:0003688(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Mch8g3014 | 798 | PRINTS | Mini-chromosome maintenance (MCM) protein 5 signature | 708 | 725 | IPR008048 | GO:0003688(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Mch8g3014 | 798 | PRINTS | Mini-chromosome maintenance (MCM) protein 5 signature | 232 | 244 | IPR008048 | GO:0003688(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Mch8g3014 | 798 | SMART | mcm | 201 | 715 | IPR031327 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch5g1103 | Mch-Chr5:9349078 | Mch8g3014 | Mch-Chr8:32749499 | 5.32E-100 | dispersed | |
| Mch5g1783 | Mch-Chr5:18278542 | Mch8g3014 | Mch-Chr8:32749499 | 3.16E-75 | dispersed | |
| Mch8g3014 | Mch-Chr8:32749499 | Mch9g0661 | Mch-Chr9:4967950 | 1.01E-90 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mch8g3014 | K02209 | - | csv:101211822 | 1389.79 |