Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g3032 ATGACTGTGGAGGACAAAAGGGCTAATTTGGGGGGTGCAAATGGGGACGTGGACCAGTTCCCAATTGGTATGAGTATTCTTGCTGTTGACGATGACCCCATTTGCCTCAAAGTCTTGGAGAATCTGCTTCGTAAATGTCAATATCGCGTTACATCGACCAATCAGGCAGCTGAGGCGCTTAAAATGTTGAGGAAGAACAGGAACAAGTTTGACCTGGTTATCAGTGACGTAAACATGCCAGACATGGATGGTTTTAAGCTCCTTGAGCTAGTAGGCCTTGAAATGGACCTTCCTGTTATCATGATGTCTGCGCATAGCGATTTCGAACTTGTAGCAAAGGGAGTTACTCACGGTGCTTGTGACTATTTGCTGAAACCTGTTCGAATTGAGGAGCTGAAGAACATATGGCAACACGTATTTCGGAGAGACAAGTTCAGTGCTAAGAACCAAAATAAGTGCACCAATGGTAATAAGGCTTCTTGTCAAACTGTTGAAGTTGCCAAAGGTTTCCCATCTGTGGTCGGTGCTGGTAATGGGAAACCTGGTAAGAGGCGGAAAGACCAAGACGACAATGAGGAAGGGGGTGAGGAAGAGAATTCTTATGAGAATGATGACTCCACCCAGAAAAAGCCAAGGGTAGATTGGAATGGTGAGTTACACAGGAAGTTTATTGCAGCTGTTAACCATTTGGGCATTGAAAAGGCTGTACCTAAGAAGATCCTTGATCTGATGAATGTTGAAGGACTTACAAGAGAAAATGTGGCTAGCCATCTTCAGAAATACAGACAATACCTTAAAAAAATGTGTACTCGGGAAGCTCAGCAACATAACATGATGGCTGCATTTGGAGGTAAAGACACCTCCTTCAGGCCGCCCATGGCTTCACTTAATGGATTTTCAATGACTGGAACAAGAAGGCTTTCAAACACGACATTCTCGTCGTATCCCTCAGGAGAAATAGTCGGTAGATTAAATTCTACTGCTGGATTGAGCTTACATGGAATTGCTTCCTCTGGAATGATCCAACAAGGTACTTTCCATAACTCAAGTAGCTTACTAGATACATTTGGGAAACTCTATCCAGCTCTGTTCCTTTCAAACCGACCCCCAAGCATATTCGACGGTATTTCAACATCATCGGATTGCATCCAGCCACTTCAGGACAGACACACCATGCAGTTTAAAGATTTTAATTTGATAAATGATGCCTCGAGTTTTACTGTTTCCACCAGCTGCCCTGATGCTAGAGTGACTGTTGGTAGTTCGAGCAATTATGACTTGGGTATTTCGAGTCATCCGTCAATGTTACAAGGACATAAGCAACAGATTCATGGTAGCGGAGAACTTGGAGATCAGTCTCCTCTTAATGTATCTCTAATCAATCCAGAATCCTTAGACCGCAGCACCGGCCTTTCTAACATTTTGTGCCATGGTCAGTCTAACAGAAACTGGCAGGGTTCAATCCAGTTATCTAAACTTGCATCAAATTTCTCCCTCACTGGAATTTACCCTCCTGATGGAATGCCCACCATTAATTTGACAATTTCTTCGACTCAGCCCGATAATGACAACTTTCCTGTTGGTTTTCCTTCAACAAGTGTGGATTCAAGTTCTCAGCTTGATTTAAGAGGGGAAACACAATGCTATGAGGAGTTAATTGGTAGTGTTGTTGAAACCATGAATGGAAGACCAGAGCAACAGTGGGAAGTAGCTAAACAGGATTATAATAGCAACCATAGTTCTAGTGTGAGAAAGTCTCTGGTCTCTGTTGACGGTATTGCAGATCCCTTGAGACAGAGCACGGATCAGAAGAAGTATCGAAAAATCGGTAGCTCTTTTACTAACCAATTGGATACTGGTGCTCCATCCTTCATTCAGCACAGTGCGGAGATATCTGCGATCGACACTTGGATGAACTATGATGGAAAAATTCTCATGGATCCAACAAAGCTACAAAATGGATTTAAAAATGCTAGTTTTAATTCCTTGGAGGAATTGGTGAATGCTATGTCGAAACAGGAACAAGATCAATCTATTCAAATGAACGACGAATTTGGTTTTGATGCTCAATCTCTCGGGTCATCGTGTATATGA 2094 42.69 MTVEDKRANLGGANGDVDQFPIGMSILAVDDDPICLKVLENLLRKCQYRVTSTNQAAEALKMLRKNRNKFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMMSAHSDFELVAKGVTHGACDYLLKPVRIEELKNIWQHVFRRDKFSAKNQNKCTNGNKASCQTVEVAKGFPSVVGAGNGKPGKRRKDQDDNEEGGEEENSYENDDSTQKKPRVDWNGELHRKFIAAVNHLGIEKAVPKKILDLMNVEGLTRENVASHLQKYRQYLKKMCTREAQQHNMMAAFGGKDTSFRPPMASLNGFSMTGTRRLSNTTFSSYPSGEIVGRLNSTAGLSLHGIASSGMIQQGTFHNSSSLLDTFGKLYPALFLSNRPPSIFDGISTSSDCIQPLQDRHTMQFKDFNLINDASSFTVSTSCPDARVTVGSSSNYDLGISSHPSMLQGHKQQIHGSGELGDQSPLNVSLINPESLDRSTGLSNILCHGQSNRNWQGSIQLSKLASNFSLTGIYPPDGMPTINLTISSTQPDNDNFPVGFPSTSVDSSSQLDLRGETQCYEELIGSVVETMNGRPEQQWEVAKQDYNSNHSSSVRKSLVSVDGIADPLRQSTDQKKYRKIGSSFTNQLDTGAPSFIQHSAEISAIDTWMNYDGKILMDPTKLQNGFKNASFNSLEELVNAMSKQEQDQSIQMNDEFGFDAQSLGSSCI 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 32922850 32927779 + MC08g2400 Mch8g3032 696653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g3032 697 PANTHER TWO-COMPONENT RESPONSE REGULATOR 24 339 IPR045279 GO:0009736(InterPro)
Mch8g3032 697 FunFam Two-component response regulator 206 269 - -
Mch8g3032 697 Gene3D - 25 167 - -
Mch8g3032 697 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160(InterPro)
Mch8g3032 697 CDD REC_typeB_ARR-like 26 140 - -
Mch8g3032 697 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160(InterPro)
Mch8g3032 697 MobiDBLite consensus disorder prediction 172 212 - -
Mch8g3032 697 Pfam Myb-like DNA-binding domain 212 262 IPR001005 -
Mch8g3032 697 SUPERFAMILY Homeodomain-like 207 268 IPR009057 -
Mch8g3032 697 SMART REC_2 24 136 IPR001789 GO:0000160(InterPro)
Mch8g3032 697 SUPERFAMILY CheY-like 23 147 IPR011006 -
Mch8g3032 697 Gene3D - 206 269 - -
Mch8g3032 697 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 207 266 IPR017930 -
Mch8g3032 697 NCBIfam myb-like DNA-binding domain, SHAQKYF class 210 263 IPR006447 GO:0003677(InterPro)
Mch8g3032 697 PIRSF RR_ARR_type-B 1 697 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1623 Mch-Chr10:16340442 Mch8g3032 Mch-Chr8:32922850 1.51E-16 dispersed
Mch5g0747 Mch-Chr5:5033128 Mch8g3032 Mch-Chr8:32922850 3.23E-84 dispersed
Mch5g1325 Mch-Chr5:14125354 Mch8g3032 Mch-Chr8:32922850 1.79E-21 dispersed
Mch6g0537 Mch-Chr6:3641458 Mch8g3032 Mch-Chr8:32922850 4.95E-46 dispersed
Mch6g2143 Mch-Chr6:23821326 Mch8g3032 Mch-Chr8:32922850 2.46E-16 dispersed
Mch8g0075 Mch-Chr8:417170 Mch8g3032 Mch-Chr8:32922850 1.41E-68 dispersed
Mch8g3032 Mch-Chr8:32922850 Mch9g0687 Mch-Chr9:5174082 2.31E-15 dispersed
Mch11g0515 Mch-Chr11:3306819 Mch8g3032 Mch-Chr8:32922850 1.67E-135 wgd
Mch6g0639 Mch-Chr6:4371040 Mch8g3032 Mch-Chr8:32922850 3.03E-147 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43957 PF00072 Response_reg 1.10E-25 CL0304 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g3032 K14491 - csv:101203718 957.207