Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch8g3054 | ATGGCACCCGCCGGCTCCTCCAATGGCGACGAGGAGTCCATTGTCACTTCCCTGCTCGCTCCTCAGAAGCCACTTGCTAATTCTTCCTCACAGGTCGCCATTGTTGGTGCTAATGTCTGCCCCATTGAGAGCCTTGATTACGAGATTTTTGATAACGAGTTCTTTATGCAAGATTGGAGAAGTCGCGGGGATTTCCAGATATTTCAATACTTGGTTGTGAAGTGGCTGTCATGCTTCTTGATTGGTCTAATTATGGGACTTGTTGGTTTTTTCAACAACCTGGCGGTGGAGAATATTGCAGGGAAGAAGTTTGTGGTCACTTCAAATATGATGCTTGAGGGGAGGTATTGGACGGCTTTTCTTGTTTTCTCTTTTTCCAATTTAGTTCTCACCCTGTTCGCATCTGTCATTACGGCATTCATCTGCCCCCAAGCAGCCGGCTCAGGTATACCAGAAGTAAAGGCTTATTTGAACGGCGTGGACGCCCCTGGGATATTATCGCCCCGGACGCTGTTGGTGAAGATTATTGGCAGCATTTCTATTGTGTCGTCATCTTTGATCGTTGGAAAAGCTGGACCTATGGTACACACAGGGGCATGTGTTGCATCCTTGGTAGGTCAGGGTGGTTTCAAAGTATTTGGTTTAACATGGAGATGGCTACACCATCTCAAGAATGATCGAGATCGGCGGGATCTTGTAACATGTGGAGCTGCTGCTGGAATAGCTGCTGCTTTTCGTGCTCCTGTTGGTGGTGTGCTGTTTGCTTTTGAAGAGATGGCATCTTGGTGGAGAAGTGCCCTTCTGTGGCGATCGTTTTTCACAACGGCTATAGTCGCTGTGATATTACGTACTCTGATTGATTTTTGTTTGAATGGCTTATGTGGATTATTTGGTAAAGGGGGGCTTATAATATTTGATACCTACTCAGACTTTCCTGCATATCACCTTGGTGATCTACCTCCTGTGCTTGCCCTTGCTTTTCTTGGGGGCATACTTGGAAGCTTATATAATTTTCTTTTGAACAAAGTTCTTCGAGTTTACAATCTCATACACGAGAGAGGCATTGTTTACAAAATTCTTTTGGCTTGCTCTGTCTCAATTTTCACATCCTGTCTTCTCTTTGGATTACCGTGGTCCGCATCATGCCAACCGTGCCCATCGAGTGCTCGAGAAATTTGTCCTACGATAGGCCGATCTGGAAACTTCAAGAAGTTTCAGTGTTCTCCCAGTCACTACAATGATCTTGCAAGTCTCATATTCAACACCAATGATGATGCCATAAAAAATCTCTTTAGCAAAGACACAGACTCTGAGTTTCAATTCTCATCAATGCTCACATTTTTCATTACCTGCTTTTCCTTGAGCATTCTCAGTTATGGAATAGTTGCTCCTGCTGGTCTTTTTGTCCCTGTTATTGTGACTGGAGCTTCTTATGGACGTTTCGTTGGAATGGTTGTCGGCCGATACACAAACCTCAGTCATGGCTTCTTCGCCATCTTGGGTGCCGCTTCATTTCTCGGGGGGTCGATGAGGACAACAGTTTCTCTCTGTGTTATTATGCTTGAATTGACCAATAATTTGTTGTTGCTGCCTTTGGTAATGCTGGTTCTCCTTGTTTCCAAGACTGTAGCTGATGCTTTCAACAGTAATATATATAACTCGATCATGAAAGCAAAAGGATTTCCTTATCTAGAAGGCCATGTTGAGCCATACATGAGGCAGTTGACTGTCGCCGATGTGTTAACGAGTCCACTACAACTATTACATGGCATTGAGAAGGTTCGTAATGTGGTAAGTGTTCTCAAATGGACGAGCCATCACGGATTCCCTGTCATTGACGAGCCTCCTTTCTCTGAATTCCCTATTTTATATGGCCTAATTCTTAGAGCTCATCTTATTATGTTGTTAAAGAAGAAAGCTTTCTTTTCTGCTCCTGCACCAGCACAAGAACGCGATGATGCCTTTAAGCTATTCTCAGTTGACGATTTTGCAAAGATGGATTCGGGTGACGTTGCTAGGATAGAAGATGTACAATTGACTGATGAGGAGATGGAGATGTTCATTGATCTACATCCCTTCACCAACACTTCACCTTGTACCGTTCTAGAGACAATGTCATTAGCAAAGGCTCTTGAAATTTTTCGGGAAACTGGTTTAAGACATATGCTAGTGATACCTAAGATCCCCGGAAGATCACCCGTGGTTGGCGTATTGACTCGGCACGACTTCATGCCAGATTACATTCTAAGTCTGCATCCATTGTTGGAGAAGAGCAGATGGAAAAGGTTGAGAATCAAATTCTGCCTGAAGAGAAAATTCTTC | 2322 | 43.93 | MAPAGSSNGDEESIVTSLLAPQKPLANSSSQVAIVGANVCPIESLDYEIFDNEFFMQDWRSRGDFQIFQYLVVKWLSCFLIGLIMGLVGFFNNLAVENIAGKKFVVTSNMMLEGRYWTAFLVFSFSNLVLTLFASVITAFICPQAAGSGIPEVKAYLNGVDAPGILSPRTLLVKIIGSISIVSSSLIVGKAGPMVHTGACVASLVGQGGFKVFGLTWRWLHHLKNDRDRRDLVTCGAAAGIAAAFRAPVGGVLFAFEEMASWWRSALLWRSFFTTAIVAVILRTLIDFCLNGLCGLFGKGGLIIFDTYSDFPAYHLGDLPPVLALAFLGGILGSLYNFLLNKVLRVYNLIHERGIVYKILLACSVSIFTSCLLFGLPWSASCQPCPSSAREICPTIGRSGNFKKFQCSPSHYNDLASLIFNTNDDAIKNLFSKDTDSEFQFSSMLTFFITCFSLSILSYGIVAPAGLFVPVIVTGASYGRFVGMVVGRYTNLSHGFFAILGAASFLGGSMRTTVSLCVIMLELTNNLLLLPLVMLVLLVSKTVADAFNSNIYNSIMKAKGFPYLEGHVEPYMRQLTVADVLTSPLQLLHGIEKVRNVVSVLKWTSHHGFPVIDEPPFSEFPILYGLILRAHLIMLLKKKAFFSAPAPAQERDDAFKLFSVDDFAKMDSGDVARIEDVQLTDEEMEMFIDLHPFTNTSPCTVLETMSLAKALEIFRETGLRHMLVIPKIPGRSPVVGVLTRHDFMPDYILSLHPLLEKSRWKRLRIKFCLKRKFF | 774 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 33032242 | 33037589 | + | MC08g2420 | Mch8g3054 | 696675 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch8g3054 | 774 | Gene3D | - | 565 | 745 | IPR046342 | - | |
| Mch8g3054 | 774 | FunFam | Chloride channel ClC3 | 66 | 381 | - | - | |
| Mch8g3054 | 774 | PRINTS | Chloride channel signature | 143 | 160 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Mch8g3054 | 774 | PRINTS | Chloride channel signature | 238 | 257 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Mch8g3054 | 774 | PRINTS | Chloride channel signature | 174 | 193 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Mch8g3054 | 774 | PRINTS | Chloride channel signature | 551 | 565 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Mch8g3054 | 774 | PRINTS | Chloride channel signature | 513 | 532 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Mch8g3054 | 774 | PRINTS | Chloride channel signature | 495 | 511 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Mch8g3054 | 774 | PRINTS | Chloride channel signature | 463 | 483 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Mch8g3054 | 774 | CDD | CBS_pair_voltage-gated_CLC_euk_bac | 576 | 746 | - | - | |
| Mch8g3054 | 774 | PRINTS | Plant CLC chloride channel signature | 291 | 298 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Mch8g3054 | 774 | PRINTS | Plant CLC chloride channel signature | 415 | 431 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Mch8g3054 | 774 | PRINTS | Plant CLC chloride channel signature | 48 | 56 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Mch8g3054 | 774 | PRINTS | Plant CLC chloride channel signature | 273 | 283 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Mch8g3054 | 774 | PRINTS | Plant CLC chloride channel signature | 259 | 267 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Mch8g3054 | 774 | PANTHER | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER | 27 | 745 | IPR051280 | GO:0009705(PANTHER)|GO:0015108(PANTHER)|GO:0043231(PANTHER) | |
| Mch8g3054 | 774 | Gene3D | Clc chloride channel | 66 | 564 | - | - | |
| Mch8g3054 | 774 | ProSiteProfiles | CBS domain profile. | 694 | 754 | IPR000644 | - | |
| Mch8g3054 | 774 | SUPERFAMILY | Clc chloride channel | 52 | 566 | IPR014743 | - | |
| Mch8g3054 | 774 | Pfam | Voltage gated chloride channel | 131 | 545 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Mch8g3054 | 774 | SUPERFAMILY | CBS-domain pair | 567 | 744 | IPR046342 | - | |
| Mch8g3054 | 774 | Pfam | CBS domain | 696 | 744 | IPR000644 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch10g0588 | Mch-Chr10:3914541 | Mch8g3054 | Mch-Chr8:33032242 | 1.07E-303 | dispersed | |
| Mch4g2589 | Mch-Chr4:26268823 | Mch8g3054 | Mch-Chr8:33032242 | 1.00E-259 | dispersed | |
| Mch7g1076 | Mch-Chr7:14813751 | Mch8g3054 | Mch-Chr8:33032242 | 7.17E-204 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mch8g3054 | K05016 | - | csv:101216071 | 1342.79 |