Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g3074 ATGTCGAGCTGCATCAATAGTCAGCAGGAGCAACTCTGCTACATCCCTTGCAATTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGCAATCTGTTTGACATCGTGACCGTCCGATGTGGTCACTGCAGCAATCTGTGGTCTGTGAATATGGCCGCCGCTTTCCAGTCTCTCTCATGGCCAAATTCTCAGGGATCAGGCCACACCCACAGCCACGGTGGGAGTGCAGCTGATTACAAGGTTGAATTGGGCTCATCGTCAAAATGCAACAACAAGATGAAGATGAGAGCAACAATTAAAAACCCTACAATTGATCCTGATCAAAGGGTCATCAACCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAACCAGTTTATAAAAGAGGAAATCCAGAGGATCAAAGCAAAAAATCCAGATATTACCCACAGGGAAGCATTCAGTACTGCTGCTAAAAATTGGGCACATTTCCCACATATTCATTTTGGCCTCATGCTTGAAACCAACAATCTGCAGACCAAAAATGATGGATCTGAGAAGCATCTGATGTCAGTGCCAGGGCTGCACTATTGA 582 45.7 MSSCINSQQEQLCYIPCNFCNIVLAVSVPCSNLFDIVTVRCGHCSNLWSVNMAAAFQSLSWPNSQGSGHTHSHGGSAADYKVELGSSSKCNNKMKMRATIKNPTIDPDQRVINRPPEKRQRVPSAYNQFIKEEIQRIKAKNPDITHREAFSTAAKNWAHFPHIHFGLMLETNNLQTKNDGSEKHLMSVPGLHY 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 33217996 33221693 + MC08g2437 Mch8g3074 696695

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g3074 193 CDD HMG-box_SF 121 157 - -
Mch8g3074 193 Gene3D High mobility group box domain 108 162 IPR036910 -
Mch8g3074 193 PANTHER PROTEIN YABBY 6-RELATED 8 178 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER)
Mch8g3074 193 FunFam axial regulator YABBY 5-like 105 163 - -
Mch8g3074 193 Pfam YABBY protein 8 167 IPR006780 GO:0007275(InterPro)
Mch8g3074 193 SUPERFAMILY HMG-box 109 160 IPR036910 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g3074 K25796 - - csv:101219877 348.591
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g1777 Mch-Chr6:20335000 Mch8g3074 Mch-Chr8:33217996 2.88E-52 dispersed
Mch8g3074 Mch-Chr8:33217996 Mch9g2062 Mch-Chr9:21735622 5.82E-37 dispersed
Mch2g0212 Mch-Chr2:1603611 Mch8g3074 Mch-Chr8:33217996 6.68E-60 transposed
Mch6g0711 Mch-Chr6:4887665 Mch8g3074 Mch-Chr8:33217996 1.53E-89 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch9g2062 . 16 171 C2C2-YABBY Transcription Factor Family AT1G69180 62.2 8.0e-47 183.7
Mch6g1777 . 74 233 C2C2-YABBY Transcription Factor Family AT2G45190 59.8 2.0e-44 175.6
Mch2g0212 . 1 167 C2C2-YABBY Transcription Factor Family AT1G08465 67.6 6.6e-57 217.2
Mch6g1777 . 30 222 C2C2-YABBY Transcription Factor Family AT1G08465 52.0 2.9e-44 175.3
Mch6g0711 . 5 180 C2C2-YABBY Transcription Factor Family AT1G08465 53.6 4.9e-44 174.5
Mch8g3074 . 5 181 C2C2-YABBY Transcription Factor Family AT1G08465 50.3 4.2e-43 171.4
Mch6g1777 . 41 231 C2C2-YABBY Transcription Factor Family AT4G00180 54.6 4.7e-51 198.0
Mch9g2254 . 1 177 C2C2-YABBY Transcription Factor Family AT1G23420 53.0 1.5e-41 166.8
Mch6g0711 . 7 175 C2C2-YABBY Transcription Factor Family AT2G26580 71.6 6.1e-62 233.8
Mch8g3074 . 10 172 C2C2-YABBY Transcription Factor Family AT2G26580 72.6 2.3e-61 231.9
Mch2g0212 . 1 168 C2C2-YABBY Transcription Factor Family AT2G26580 60.5 2.7e-49 191.8
Mch6g1777 . 30 195 C2C2-YABBY Transcription Factor Family AT2G26580 53.8 5.7e-44 174.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001272 2 2 3 3 3 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 7 3 1 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43959 PF04690 YABBY 9.60E-71 CL0114 Mch TF