Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g3074 ATGTCGAGCTGCATCAATAGTCAGCAGGAGCAACTCTGCTACATCCCTTGCAATTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGCAATCTGTTTGACATCGTGACCGTCCGATGTGGTCACTGCAGCAATCTGTGGTCTGTGAATATGGCCGCCGCTTTCCAGTCTCTCTCATGGCCAAATTCTCAGGGATCAGGCCACACCCACAGCCACGGTGGGAGTGCAGCTGATTACAAGGTTGAATTGGGCTCATCGTCAAAATGCAACAACAAGATGAAGATGAGAGCAACAATTAAAAACCCTACAATTGATCCTGATCAAAGGGTCATCAACCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAACCAGTTTATAAAAGAGGAAATCCAGAGGATCAAAGCAAAAAATCCAGATATTACCCACAGGGAAGCATTCAGTACTGCTGCTAAAAATTGGGCACATTTCCCACATATTCATTTTGGCCTCATGCTTGAAACCAACAATCTGCAGACCAAAAATGATGGATCTGAGAAGCATCTGATGTCAGTGCCAGGGCTGCACTATTGA 582 45.7 MSSCINSQQEQLCYIPCNFCNIVLAVSVPCSNLFDIVTVRCGHCSNLWSVNMAAAFQSLSWPNSQGSGHTHSHGGSAADYKVELGSSSKCNNKMKMRATIKNPTIDPDQRVINRPPEKRQRVPSAYNQFIKEEIQRIKAKNPDITHREAFSTAAKNWAHFPHIHFGLMLETNNLQTKNDGSEKHLMSVPGLHY 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 33217996 33221693 + MC08g2437 Mch8g3074 696695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g3074 193 CDD HMG-box_SF 121 157 - -
Mch8g3074 193 Gene3D High mobility group box domain 108 162 IPR036910 -
Mch8g3074 193 PANTHER PROTEIN YABBY 6-RELATED 8 178 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER)
Mch8g3074 193 FunFam axial regulator YABBY 5-like 105 163 - -
Mch8g3074 193 Pfam YABBY protein 8 167 IPR006780 GO:0007275(InterPro)
Mch8g3074 193 SUPERFAMILY HMG-box 109 160 IPR036910 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g1777 Mch-Chr6:20335000 Mch8g3074 Mch-Chr8:33217996 2.88E-52 dispersed
Mch8g3074 Mch-Chr8:33217996 Mch9g2062 Mch-Chr9:21735622 5.82E-37 dispersed
Mch2g0212 Mch-Chr2:1603611 Mch8g3074 Mch-Chr8:33217996 6.68E-60 transposed
Mch6g0711 Mch-Chr6:4887665 Mch8g3074 Mch-Chr8:33217996 1.53E-89 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43959 PF04690 YABBY 9.60E-71 CL0114 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g3074 K25796 - csv:101219877 348.591