Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g3079 ATGGTGCCATCAAAGAAGTTCAGAGGTGTTAGGCAGCGCCACTGGGGATCTTGGGTCTCTGAAATTCGCCACCCTCTTCTAAAAAGAAGAGTTTGGTTGGGAACTTTTGAGACGGCGGAGGAGGCGGCGCGAGCATACGATCAAGCCGCCGTGATAATGAGCGGCCGGAACGCCAAAACCAACTTTCCGATGAGCCAAACGGCAGCGGCAGCCGATCAAGAAAAACCCGACCGGATTTCACCGTATTCTCCGAAAGGTCTGTCGGAGATTCTCCACGCCAAGCTTCGAAAATGCGGCAAAGCGCCGTCTCCATCGATGACGTGTCTGAGGCTCGACACTGAAAATTCCCACATCGGCGTGTGGCAGAAACGCGCCGGCCAACCCACCTGGATCATGACCGCTCACCTCGGAAAACAGACTGCCGCACGAGACGACGGTCGTTTGCGAAATAATAGTAATAATAATAACTTTTCTGATGTTCCTGCTCGTCCTCCAGTGACGACGGGTGGACCGCATCGGAGGAATCTGCAGATTGATGAGGAAGAAAGAATTGCGCTGCAAATGATTGAGGAATTGCTGAGCAGAAACTGCTGCAGCCCATCTGATCATAATCTTCAAGTTCAAGTTCAAGATCAAGGGGAAGAAAGTTTTAATTTCGCTCTTTAA 666 51.05 MVPSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVIMSGRNAKTNFPMSQTAAAADQEKPDRISPYSPKGLSEILHAKLRKCGKAPSPSMTCLRLDTENSHIGVWQKRAGQPTWIMTAHLGKQTAARDDGRLRNNSNNNNFSDVPARPPVTTGGPHRRNLQIDEEERIALQMIEELLSRNCCSPSDHNLQVQVQDQGEESFNFAL 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 33261065 33262677 + MC08g2442 Mch8g3079 696700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g3079 221 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g3079 221 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g3079 221 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677(InterPro)
Mch8g3079 221 MobiDBLite consensus disorder prediction 144 175 - -
Mch8g3079 221 MobiDBLite consensus disorder prediction 65 85 - -
Mch8g3079 221 CDD AP2 5 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g3079 221 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g3079 221 MobiDBLite consensus disorder prediction 146 162 - -
Mch8g3079 221 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g3079 221 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 117 IPR050913 -
Mch8g3079 221 Pfam AP2 domain 6 50 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g3079 221 SMART rav1_2 6 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g3079 221 FunFam Ethylene-responsive transcription factor 2 5 64 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g1082 Mch-Chr8:7650517 Mch8g3079 Mch-Chr8:33261065 5.75E-26 dispersed
Mch8g3079 Mch-Chr8:33261065 Mch9g0455 Mch-Chr9:3388481 1.88E-29 dispersed
Mch11g0559 Mch-Chr11:3591294 Mch8g3079 Mch-Chr8:33261065 2.78E-70 wgd
Mch6g0721 Mch-Chr6:4958144 Mch8g3079 Mch-Chr8:33261065 1.83E-66 wgd
Mch8g1129 Mch-Chr8:8077157 Mch8g3079 Mch-Chr8:33261065 3.49E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43960 PF00847 AP2 3.60E-12 CL0081 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g3079 - - - 0.0