Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch8g3079 | ATGGTGCCATCAAAGAAGTTCAGAGGTGTTAGGCAGCGCCACTGGGGATCTTGGGTCTCTGAAATTCGCCACCCTCTTCTAAAAAGAAGAGTTTGGTTGGGAACTTTTGAGACGGCGGAGGAGGCGGCGCGAGCATACGATCAAGCCGCCGTGATAATGAGCGGCCGGAACGCCAAAACCAACTTTCCGATGAGCCAAACGGCAGCGGCAGCCGATCAAGAAAAACCCGACCGGATTTCACCGTATTCTCCGAAAGGTCTGTCGGAGATTCTCCACGCCAAGCTTCGAAAATGCGGCAAAGCGCCGTCTCCATCGATGACGTGTCTGAGGCTCGACACTGAAAATTCCCACATCGGCGTGTGGCAGAAACGCGCCGGCCAACCCACCTGGATCATGACCGCTCACCTCGGAAAACAGACTGCCGCACGAGACGACGGTCGTTTGCGAAATAATAGTAATAATAATAACTTTTCTGATGTTCCTGCTCGTCCTCCAGTGACGACGGGTGGACCGCATCGGAGGAATCTGCAGATTGATGAGGAAGAAAGAATTGCGCTGCAAATGATTGAGGAATTGCTGAGCAGAAACTGCTGCAGCCCATCTGATCATAATCTTCAAGTTCAAGTTCAAGATCAAGGGGAAGAAAGTTTTAATTTCGCTCTTTAA | 666 | 51.05 | MVPSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVIMSGRNAKTNFPMSQTAAAADQEKPDRISPYSPKGLSEILHAKLRKCGKAPSPSMTCLRLDTENSHIGVWQKRAGQPTWIMTAHLGKQTAARDDGRLRNNSNNNNFSDVPARPPVTTGGPHRRNLQIDEEERIALQMIEELLSRNCCSPSDHNLQVQVQDQGEESFNFAL | 221 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 33261065 | 33262677 | + | MC08g2442 | Mch8g3079 | 696700 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch8g3079 | 221 | PRINTS | Ethylene responsive element binding protein signature | 7 | 18 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch8g3079 | 221 | PRINTS | Ethylene responsive element binding protein signature | 29 | 45 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch8g3079 | 221 | SUPERFAMILY | DNA-binding domain | 6 | 65 | IPR016177 | GO:0003677(InterPro) | |
Mch8g3079 | 221 | MobiDBLite | consensus disorder prediction | 144 | 175 | - | - | |
Mch8g3079 | 221 | MobiDBLite | consensus disorder prediction | 65 | 85 | - | - | |
Mch8g3079 | 221 | CDD | AP2 | 5 | 65 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch8g3079 | 221 | Gene3D | AP2/ERF domain | 5 | 65 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch8g3079 | 221 | MobiDBLite | consensus disorder prediction | 146 | 162 | - | - | |
Mch8g3079 | 221 | ProSiteProfiles | AP2/ERF domain profile. | 6 | 63 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch8g3079 | 221 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 5 | 117 | IPR050913 | - | |
Mch8g3079 | 221 | Pfam | AP2 domain | 6 | 50 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch8g3079 | 221 | SMART | rav1_2 | 6 | 69 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch8g3079 | 221 | FunFam | Ethylene-responsive transcription factor 2 | 5 | 64 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch8g1082 | Mch-Chr8:7650517 | Mch8g3079 | Mch-Chr8:33261065 | 5.75E-26 | dispersed | |
Mch8g3079 | Mch-Chr8:33261065 | Mch9g0455 | Mch-Chr9:3388481 | 1.88E-29 | dispersed | |
Mch11g0559 | Mch-Chr11:3591294 | Mch8g3079 | Mch-Chr8:33261065 | 2.78E-70 | wgd | |
Mch6g0721 | Mch-Chr6:4958144 | Mch8g3079 | Mch-Chr8:33261065 | 1.83E-66 | wgd | |
Mch8g1129 | Mch-Chr8:8077157 | Mch8g3079 | Mch-Chr8:33261065 | 3.49E-53 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
43960 | PF00847 | AP2 | 3.60E-12 | CL0081 | Mch | TF |
Pathway information
