Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g3114 ATGCCATCTCCCGGTTCAGAAGTAAGTGGGGTTGTTGATTGCAAGCCTCACAGCTACTCTATGTTGCTGAAATCATTTGTGTCATCAGATCATCAGATGCCTCATCTTCCTCCTCAACATCACTACAACCAGAACCAGCTTGAAGATTTGCTCTCTAGACTTGAAGGAGAGAGACTCAAAATTGATGCTTTCAAACGTGAACTTCCTCTTTGCATGCAACTTTTAACCAATGCTTTGGAGACTTCTAGGCAGCAGCTCCAAGGCTGCAGAGCAAACAACAACAACAATAATCAAAGTGGAACAAAACCAATTCTTGAAGAGTTCATTCCCATAAAACAATCAACCTCAGAAGGCTCAGAAACCATATCAAACATTTCTGATAAGGCAAATTGGATGACATCTGCCCAACTTTGGAGCCAAGCAACAACAACAACAACACCAAATGATGAAACGAAACCAAATCTTTCCTCTTCAAAAGAAGCCAACAAGAACAATTCTGAAGAAGTTGGTTTCGATTTGGGTAATTTTGAAGCAAAACTTCATAGAAATAACAACAATAATAATGGGATTATTGGTGGAGCTTTTCTTCCATTCTCAAAAGATAGAAATTTGTGCAACACCCAAAATTCTACAACTATTGCCACCACTGCTCAGCTCCCGGATTTGGCCCTCGCCGCCGCCGGCTGTGGAGATCAAGAAATTAACGAGTGTGTTAATTCCGATCATCACCAGCCGGAAAATAATAATTTGCTGGCCGCCGGCGAGGGGCAGACGACGAGTAATAATATTTCGACTCCGGCGGCGAATAATAACAATAACAACTCCACAAATCAGACTCACCGGAAGGCTAGGAGGTGCTGGTCGCCGGATTTGCACAGGAGATTTGTTAATGCTCTTCAAATGCTTGGTGGTTCCCAAGTTGCCACCCCAAAGCAGATCAGGGAGCTGATGAAGGTTGACGGTTTGACCAATGATGAGGTTAAAAGCCATTTGCAGAAATACAGGTTGCACACAAGAAGGCCTAGTCCAAGCCCACAAGCCGCCGGAGCTCCGGCGCCGCAGCTAGTCGTCTTAGGAGGCATCTGGGTTCCACCGGAGTACGCCACGGCGGCGGCGGCGGCGGCGCACGGCGGAGCTCCCGCCCTCTACGGCCCACACCCAACTTCCTACTGTGCACCACCGGTGCACCAAGATTTCTATCCACCGGCGCCGGCGCTGCCGCACCACCAGCTCCACCAGCAGTTGCACATGTACAAGGCCGCCGCCGCCCAGGCCCAAAGCTCGCCGGAATCCGATGGACGGGGAAACGGAGACCGCTCCGAGAGCATTGAGGACGGCGGCAAGTCGGAAAGCGGCAGCTGGAAAGCTGAGAGCGGCGGCGGAGGAGAGAGAAAGGGGAACTTGGCGGCGCTGAGGCAAGAGGGAGAGGAAAGCAATGGAAGTGAAATTACACTCAAATTCTGA 1464 49.73 MPSPGSEVSGVVDCKPHSYSMLLKSFVSSDHQMPHLPPQHHYNQNQLEDLLSRLEGERLKIDAFKRELPLCMQLLTNALETSRQQLQGCRANNNNNNQSGTKPILEEFIPIKQSTSEGSETISNISDKANWMTSAQLWSQATTTTTPNDETKPNLSSSKEANKNNSEEVGFDLGNFEAKLHRNNNNNNGIIGGAFLPFSKDRNLCNTQNSTTIATTAQLPDLALAAAGCGDQEINECVNSDHHQPENNNLLAAGEGQTTSNNISTPAANNNNNNSTNQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSPQAAGAPAPQLVVLGGIWVPPEYATAAAAAAHGGAPALYGPHPTSYCAPPVHQDFYPPAPALPHHQLHQQLHMYKAAAAQAQSSPESDGRGNGDRSESIEDGGKSESGSWKAESGGGGERKGNLAALRQEGEESNGSEITLKF 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 33492882 33496726 - MC08g_new0642 Mch8g3114 696735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g3114 487 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 279 339 IPR017930 -
Mch8g3114 487 MobiDBLite consensus disorder prediction 434 451 - -
Mch8g3114 487 FunFam Myb family transcription factor 281 339 - -
Mch8g3114 487 Gene3D - 281 339 - -
Mch8g3114 487 Pfam Myb-like DNA-binding domain 284 335 IPR001005 -
Mch8g3114 487 Coils Coil 47 67 - -
Mch8g3114 487 SUPERFAMILY Homeodomain-like 279 340 IPR009057 -
Mch8g3114 487 MobiDBLite consensus disorder prediction 252 284 - -
Mch8g3114 487 MobiDBLite consensus disorder prediction 252 282 - -
Mch8g3114 487 NCBIfam myb-like DNA-binding domain, SHAQKYF class 282 337 IPR006447 GO:0003677(InterPro)
Mch8g3114 487 MobiDBLite consensus disorder prediction 140 167 - -
Mch8g3114 487 MobiDBLite consensus disorder prediction 417 487 - -
Mch8g3114 487 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 42 448 IPR044787 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g3114 487 MobiDBLite consensus disorder prediction 140 164 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g1328 Mch-Chr4:16489325 Mch8g3114 Mch-Chr8:33492882 6.22E-47 dispersed
Mch8g1791 Mch-Chr8:17883117 Mch8g3114 Mch-Chr8:33492882 1.56E-12 dispersed
Mch8g3114 Mch-Chr8:33492882 Mch9g1987 Mch-Chr9:21209727 7.05E-51 dispersed
Mch6g0769 Mch-Chr6:5308208 Mch8g3114 Mch-Chr8:33492882 3.51E-98 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43962 PF00249 Myb_DNA-binding 1.10E-05 CL0123 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g3114 - - - 0.0