Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g3114 ATGCCATCTCCCGGTTCAGAAGTAAGTGGGGTTGTTGATTGCAAGCCTCACAGCTACTCTATGTTGCTGAAATCATTTGTGTCATCAGATCATCAGATGCCTCATCTTCCTCCTCAACATCACTACAACCAGAACCAGCTTGAAGATTTGCTCTCTAGACTTGAAGGAGAGAGACTCAAAATTGATGCTTTCAAACGTGAACTTCCTCTTTGCATGCAACTTTTAACCAATGCTTTGGAGACTTCTAGGCAGCAGCTCCAAGGCTGCAGAGCAAACAACAACAACAATAATCAAAGTGGAACAAAACCAATTCTTGAAGAGTTCATTCCCATAAAACAATCAACCTCAGAAGGCTCAGAAACCATATCAAACATTTCTGATAAGGCAAATTGGATGACATCTGCCCAACTTTGGAGCCAAGCAACAACAACAACAACACCAAATGATGAAACGAAACCAAATCTTTCCTCTTCAAAAGAAGCCAACAAGAACAATTCTGAAGAAGTTGGTTTCGATTTGGGTAATTTTGAAGCAAAACTTCATAGAAATAACAACAATAATAATGGGATTATTGGTGGAGCTTTTCTTCCATTCTCAAAAGATAGAAATTTGTGCAACACCCAAAATTCTACAACTATTGCCACCACTGCTCAGCTCCCGGATTTGGCCCTCGCCGCCGCCGGCTGTGGAGATCAAGAAATTAACGAGTGTGTTAATTCCGATCATCACCAGCCGGAAAATAATAATTTGCTGGCCGCCGGCGAGGGGCAGACGACGAGTAATAATATTTCGACTCCGGCGGCGAATAATAACAATAACAACTCCACAAATCAGACTCACCGGAAGGCTAGGAGGTGCTGGTCGCCGGATTTGCACAGGAGATTTGTTAATGCTCTTCAAATGCTTGGTGGTTCCCAAGTTGCCACCCCAAAGCAGATCAGGGAGCTGATGAAGGTTGACGGTTTGACCAATGATGAGGTTAAAAGCCATTTGCAGAAATACAGGTTGCACACAAGAAGGCCTAGTCCAAGCCCACAAGCCGCCGGAGCTCCGGCGCCGCAGCTAGTCGTCTTAGGAGGCATCTGGGTTCCACCGGAGTACGCCACGGCGGCGGCGGCGGCGGCGCACGGCGGAGCTCCCGCCCTCTACGGCCCACACCCAACTTCCTACTGTGCACCACCGGTGCACCAAGATTTCTATCCACCGGCGCCGGCGCTGCCGCACCACCAGCTCCACCAGCAGTTGCACATGTACAAGGCCGCCGCCGCCCAGGCCCAAAGCTCGCCGGAATCCGATGGACGGGGAAACGGAGACCGCTCCGAGAGCATTGAGGACGGCGGCAAGTCGGAAAGCGGCAGCTGGAAAGCTGAGAGCGGCGGCGGAGGAGAGAGAAAGGGGAACTTGGCGGCGCTGAGGCAAGAGGGAGAGGAAAGCAATGGAAGTGAAATTACACTCAAATTCTGA 1464 49.73 MPSPGSEVSGVVDCKPHSYSMLLKSFVSSDHQMPHLPPQHHYNQNQLEDLLSRLEGERLKIDAFKRELPLCMQLLTNALETSRQQLQGCRANNNNNNQSGTKPILEEFIPIKQSTSEGSETISNISDKANWMTSAQLWSQATTTTTPNDETKPNLSSSKEANKNNSEEVGFDLGNFEAKLHRNNNNNNGIIGGAFLPFSKDRNLCNTQNSTTIATTAQLPDLALAAAGCGDQEINECVNSDHHQPENNNLLAAGEGQTTSNNISTPAANNNNNNSTNQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSPQAAGAPAPQLVVLGGIWVPPEYATAAAAAAHGGAPALYGPHPTSYCAPPVHQDFYPPAPALPHHQLHQQLHMYKAAAAQAQSSPESDGRGNGDRSESIEDGGKSESGSWKAESGGGGERKGNLAALRQEGEESNGSEITLKF 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 33492882 33496726 - MC08g_new0642 Mch8g3114 696735

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g3114 487 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 279 339 IPR017930 -
Mch8g3114 487 MobiDBLite consensus disorder prediction 434 451 - -
Mch8g3114 487 FunFam Myb family transcription factor 281 339 - -
Mch8g3114 487 Gene3D - 281 339 - -
Mch8g3114 487 Pfam Myb-like DNA-binding domain 284 335 IPR001005 -
Mch8g3114 487 Coils Coil 47 67 - -
Mch8g3114 487 SUPERFAMILY Homeodomain-like 279 340 IPR009057 -
Mch8g3114 487 MobiDBLite consensus disorder prediction 252 284 - -
Mch8g3114 487 MobiDBLite consensus disorder prediction 252 282 - -
Mch8g3114 487 NCBIfam myb-like DNA-binding domain, SHAQKYF class 282 337 IPR006447 GO:0003677(InterPro)
Mch8g3114 487 MobiDBLite consensus disorder prediction 140 167 - -
Mch8g3114 487 MobiDBLite consensus disorder prediction 417 487 - -
Mch8g3114 487 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 42 448 IPR044787 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g3114 487 MobiDBLite consensus disorder prediction 140 164 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g3114 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g1328 Mch-Chr4:16489325 Mch8g3114 Mch-Chr8:33492882 6.22E-47 dispersed
Mch8g1791 Mch-Chr8:17883117 Mch8g3114 Mch-Chr8:33492882 1.56E-12 dispersed
Mch8g3114 Mch-Chr8:33492882 Mch9g1987 Mch-Chr9:21209727 7.05E-51 dispersed
Mch6g0769 Mch-Chr6:5308208 Mch8g3114 Mch-Chr8:33492882 3.51E-98 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch5g0198 . 12 320 G2-like Transcription Factor Family AT3G24120 57.6 1.7e-78 289.7
Mch4g0013 . 20 178 G2-like Transcription Factor Family AT3G24120 59.8 3.7e-41 165.6
Mch8g0732 . 15 150 G2-like Transcription Factor Family AT5G42630 62.8 8.9e-40 160.6
Mch11g0241 . 10 152 G2-like Transcription Factor Family AT5G42630 55.2 9.2e-37 150.6
Mch8g3114 . 12 488 G2-like Transcription Factor Family AT2G03500 50.3 2.1e-90 329.7
Mch4g1328 . 20 262 G2-like Transcription Factor Family AT1G25550 58.2 7.6e-57 217.6
Mch9g1987 . 19 253 G2-like Transcription Factor Family AT1G25550 53.8 6.2e-51 198.0
Mch4g1328 . 20 262 G2-like Transcription Factor Family AT3G25790 50.6 2.3e-39 159.5
Mch3g0205 . 1 289 G2-like Transcription Factor Family AT3G46640 50.2 3.5e-61 232.3
Mch1g0471 . 1 301 G2-like Transcription Factor Family AT5G05090 57.4 1.3e-74 276.6
Mch5g1325 . 1 275 G2-like Transcription Factor Family AT5G05090 54.6 9.5e-73 270.4
Mch5g0198 . 12 320 G2-like Transcription Factor Family AT4G13640 56.2 2.9e-62 235.7
Mch5g0198 . 12 320 G2-like Transcription Factor Family AT3G24120 57.6 1.7e-78 289.7
Mch4g0013 . 20 178 G2-like Transcription Factor Family AT3G24120 59.8 3.7e-41 165.6
Mch5g1160 . 35 267 G2-like Transcription Factor Family AT1G69580 50.8 2.2e-42 169.9
Mch4g0013 . 1 360 G2-like Transcription Factor Family AT1G79430 51.8 1.3e-72 270.4
Mch5g0198 . 31 209 G2-like Transcription Factor Family AT1G79430 56.8 1.1e-39 161.0
Mch1g1664 . 82 325 G2-like Transcription Factor Family AT2G01060 55.2 6.5e-57 217.6
Mch1g0471 . 1 301 G2-like Transcription Factor Family AT3G10760 63.2 4.7e-93 338.2
Mch5g1325 . 1 275 G2-like Transcription Factor Family AT3G10760 58.3 8.8e-84 307.4
Mch5g1325 . 1 193 G2-like Transcription Factor Family AT2G40970 61.6 3.2e-62 235.3
Mch1g0471 . 1 202 G2-like Transcription Factor Family AT2G40970 61.0 3.0e-60 228.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002001 2 1 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 2 2 1 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43962 PF00249 Myb_DNA-binding 1.10E-05 CL0123 Mch TF