Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch8g3114 | ATGCCATCTCCCGGTTCAGAAGTAAGTGGGGTTGTTGATTGCAAGCCTCACAGCTACTCTATGTTGCTGAAATCATTTGTGTCATCAGATCATCAGATGCCTCATCTTCCTCCTCAACATCACTACAACCAGAACCAGCTTGAAGATTTGCTCTCTAGACTTGAAGGAGAGAGACTCAAAATTGATGCTTTCAAACGTGAACTTCCTCTTTGCATGCAACTTTTAACCAATGCTTTGGAGACTTCTAGGCAGCAGCTCCAAGGCTGCAGAGCAAACAACAACAACAATAATCAAAGTGGAACAAAACCAATTCTTGAAGAGTTCATTCCCATAAAACAATCAACCTCAGAAGGCTCAGAAACCATATCAAACATTTCTGATAAGGCAAATTGGATGACATCTGCCCAACTTTGGAGCCAAGCAACAACAACAACAACACCAAATGATGAAACGAAACCAAATCTTTCCTCTTCAAAAGAAGCCAACAAGAACAATTCTGAAGAAGTTGGTTTCGATTTGGGTAATTTTGAAGCAAAACTTCATAGAAATAACAACAATAATAATGGGATTATTGGTGGAGCTTTTCTTCCATTCTCAAAAGATAGAAATTTGTGCAACACCCAAAATTCTACAACTATTGCCACCACTGCTCAGCTCCCGGATTTGGCCCTCGCCGCCGCCGGCTGTGGAGATCAAGAAATTAACGAGTGTGTTAATTCCGATCATCACCAGCCGGAAAATAATAATTTGCTGGCCGCCGGCGAGGGGCAGACGACGAGTAATAATATTTCGACTCCGGCGGCGAATAATAACAATAACAACTCCACAAATCAGACTCACCGGAAGGCTAGGAGGTGCTGGTCGCCGGATTTGCACAGGAGATTTGTTAATGCTCTTCAAATGCTTGGTGGTTCCCAAGTTGCCACCCCAAAGCAGATCAGGGAGCTGATGAAGGTTGACGGTTTGACCAATGATGAGGTTAAAAGCCATTTGCAGAAATACAGGTTGCACACAAGAAGGCCTAGTCCAAGCCCACAAGCCGCCGGAGCTCCGGCGCCGCAGCTAGTCGTCTTAGGAGGCATCTGGGTTCCACCGGAGTACGCCACGGCGGCGGCGGCGGCGGCGCACGGCGGAGCTCCCGCCCTCTACGGCCCACACCCAACTTCCTACTGTGCACCACCGGTGCACCAAGATTTCTATCCACCGGCGCCGGCGCTGCCGCACCACCAGCTCCACCAGCAGTTGCACATGTACAAGGCCGCCGCCGCCCAGGCCCAAAGCTCGCCGGAATCCGATGGACGGGGAAACGGAGACCGCTCCGAGAGCATTGAGGACGGCGGCAAGTCGGAAAGCGGCAGCTGGAAAGCTGAGAGCGGCGGCGGAGGAGAGAGAAAGGGGAACTTGGCGGCGCTGAGGCAAGAGGGAGAGGAAAGCAATGGAAGTGAAATTACACTCAAATTCTGA | 1464 | 49.73 | MPSPGSEVSGVVDCKPHSYSMLLKSFVSSDHQMPHLPPQHHYNQNQLEDLLSRLEGERLKIDAFKRELPLCMQLLTNALETSRQQLQGCRANNNNNNQSGTKPILEEFIPIKQSTSEGSETISNISDKANWMTSAQLWSQATTTTTPNDETKPNLSSSKEANKNNSEEVGFDLGNFEAKLHRNNNNNNGIIGGAFLPFSKDRNLCNTQNSTTIATTAQLPDLALAAAGCGDQEINECVNSDHHQPENNNLLAAGEGQTTSNNISTPAANNNNNNSTNQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSPQAAGAPAPQLVVLGGIWVPPEYATAAAAAAHGGAPALYGPHPTSYCAPPVHQDFYPPAPALPHHQLHQQLHMYKAAAAQAQSSPESDGRGNGDRSESIEDGGKSESGSWKAESGGGGERKGNLAALRQEGEESNGSEITLKF | 487 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 33492882 | 33496726 | - | MC08g_new0642 | Mch8g3114 | 696735 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch8g3114 | 487 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 279 | 339 | IPR017930 | - | |
Mch8g3114 | 487 | MobiDBLite | consensus disorder prediction | 434 | 451 | - | - | |
Mch8g3114 | 487 | FunFam | Myb family transcription factor | 281 | 339 | - | - | |
Mch8g3114 | 487 | Gene3D | - | 281 | 339 | - | - | |
Mch8g3114 | 487 | Pfam | Myb-like DNA-binding domain | 284 | 335 | IPR001005 | - | |
Mch8g3114 | 487 | Coils | Coil | 47 | 67 | - | - | |
Mch8g3114 | 487 | SUPERFAMILY | Homeodomain-like | 279 | 340 | IPR009057 | - | |
Mch8g3114 | 487 | MobiDBLite | consensus disorder prediction | 252 | 284 | - | - | |
Mch8g3114 | 487 | MobiDBLite | consensus disorder prediction | 252 | 282 | - | - | |
Mch8g3114 | 487 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 282 | 337 | IPR006447 | GO:0003677(InterPro) | |
Mch8g3114 | 487 | MobiDBLite | consensus disorder prediction | 140 | 167 | - | - | |
Mch8g3114 | 487 | MobiDBLite | consensus disorder prediction | 417 | 487 | - | - | |
Mch8g3114 | 487 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR | 42 | 448 | IPR044787 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch8g3114 | 487 | MobiDBLite | consensus disorder prediction | 140 | 164 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch4g1328 | Mch-Chr4:16489325 | Mch8g3114 | Mch-Chr8:33492882 | 6.22E-47 | dispersed | |
Mch8g1791 | Mch-Chr8:17883117 | Mch8g3114 | Mch-Chr8:33492882 | 1.56E-12 | dispersed | |
Mch8g3114 | Mch-Chr8:33492882 | Mch9g1987 | Mch-Chr9:21209727 | 7.05E-51 | dispersed | |
Mch6g0769 | Mch-Chr6:5308208 | Mch8g3114 | Mch-Chr8:33492882 | 3.51E-98 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
43962 | PF00249 | Myb_DNA-binding | 1.10E-05 | CL0123 | Mch | TF |
Pathway information
