Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g3115 ATGGCGGCACTCGCTCTTTACTCTGCCTTTCTTCTTTTCCTTCTTCTCCTCACTCGCCGGGTCGACTCCGAGCCCACTCAGGATAAACAAGCGCTCCTCAATTTCCTCTCTCACACCCCACACGCCAATCGCCTTCAATGGAATCCCTCCACTTCCGTCTGCAATTGGGTCGGCGTTGAGTGCGATTCCAACCAGTCCTTCGTCTACTCTCTCCGTTTGCCCGGCGTCGGCCTTGTCGGTCCCATTCCTTCCAACTCCATCGGCGATTTGACTCAGCTCCGAGTTCTCAGTCTCCGCTCCAATCGTCTCTCCGGTCAGATCCCCTCCGATTTCTCCAATTTGACAATGCTGCGGAATCTCTACCTCCAGGACAACGCTTTCTCCGGCGACTTCCCCCCGAGTCTCACTCGCTTGACTCGCTTGACTCGTCTAGATTTGTCTTCCAACAACTTTTCTGGCCCGATTCCGCCGTCTGTCGACAATCTCACTCACTTGAGTGGATTTTTCCTGCAGAACAATGGATTCTCCGGTTCAATCCCCGCCATTCCCGCCGTCAATTTAACGAGCTTCAATGTCTCCCACAATAATCTCAACGGCTCCATTCCCAATTCGCTGTCGAAATTCCCGGCCTCCTCATTCGCCGGAAACCTAGATCTCTGCGGCGGGCCGTTCCCATCGTGCAATCCATCCGCTCCCTCGCCGGTCCCATTCGAAAATCCACCAAACTCCGGCGGTGGAAAATCCAAGCGGCTCTCCACATCCGCGATCATCGGCATCGTCGTCGGCTCCGTCGTCGCCGCGCTCGCTCTACTCCTCCTCCTCATCCTCTGCATTCGCAACCGCTCCCGCCAACATGTCTCGAAGTCGCCAAAACCACCAGCAACAGCCACGGCGGCGCGTGCGGTTGCGGTTGCGGAGGCCGGAACATCGTCGTCGAAGGACGACATCACGGGGGGATCGGTGGAGGCCGGGGAGAGGAACAAGCTGGTGTTCTTCGAAGGCGGAGTGTACAACTTCGATTTGGAAGATTTGCTCCGGGCGTCGGCGGAGGTGCTGGGGAAGGGGAGCGTCGGAACGTCGTACAAGGCGGTGCTGGAGGAAGGGACGACGGTGGTGGTGAAGCGGCTGAAGGATGTGGTGGTGACGAAGAAGGAATTCGAGACGCAAATGGAAATTGTGGGCAACATTAAACACCAAAATCTGGTTCCCTTCAGAGCTTTCTATTTCTCCAAAGACGAGAAACTTCTGGTTTCCGATTACATCCCCACCGGAAGCTTGTCGGCGAGCCTCCACGGGAGTAGAGGGTCCGGGCGGACCCCGCTGGACTGGGATTCAAGAATGAGAATAGCGGTGAGCGCCGGCAGGGGGCTGGCCCACCTCCACATCTCCGGCAAGGTGGTTCACGGCAACATCAAGTCATCCAACGTCTTGCTCCGCCCCGACCACGACGCCTGCATCTCCGACTTCGGCCTCAACCCTCTCTTCGGCACCGCCACGCCGCCCAACCGGGTCGCCGGATACCGTGCCCCGGAGGTCCTCGAGACCCGCAAAGTCACCTTCAAATCCGACGTCTACAGCTTCGGCGTTCTCCTTCTCGAGCTCTTGACCGGAAAGGCCCCCAATCAGCACTCCCTCGGAGAGGAAGGAATCGACCTTCCCCGCTGGGTCCAGTCCGTCGTCCGGGAAGAATGGACCGCCGAGGTGTTCGACGCCGAGCTCTTGCGATTCCACAACATTGAAGAAGAGATGGTTCAGTTGCTGCAGATCGCAATGTCGTGCGTTTCCACGGTCCCCGATCAGCGTCCGGCCATGCCCGAAGTTGTACGGATGATCGAGGATATGAACAGAAGCGAGACCGACGACGGCTTGCGCCAGTCCTCCGATGACCCTTCCAAGGGCTCCGACGTCAACACGCCGCCGGCGGAGTCGAGAACCCCACCAAGAGTCATCACACCATAG 1959 58.3 MAALALYSAFLLFLLLLTRRVDSEPTQDKQALLNFLSHTPHANRLQWNPSTSVCNWVGVECDSNQSFVYSLRLPGVGLVGPIPSNSIGDLTQLRVLSLRSNRLSGQIPSDFSNLTMLRNLYLQDNAFSGDFPPSLTRLTRLTRLDLSSNNFSGPIPPSVDNLTHLSGFFLQNNGFSGSIPAIPAVNLTSFNVSHNNLNGSIPNSLSKFPASSFAGNLDLCGGPFPSCNPSAPSPVPFENPPNSGGGKSKRLSTSAIIGIVVGSVVAALALLLLLILCIRNRSRQHVSKSPKPPATATAARAVAVAEAGTSSSKDDITGGSVEAGERNKLVFFEGGVYNFDLEDLLRASAEVLGKGSVGTSYKAVLEEGTTVVVKRLKDVVVTKKEFETQMEIVGNIKHQNLVPFRAFYFSKDEKLLVSDYIPTGSLSASLHGSRGSGRTPLDWDSRMRIAVSAGRGLAHLHISGKVVHGNIKSSNVLLRPDHDACISDFGLNPLFGTATPPNRVAGYRAPEVLETRKVTFKSDVYSFGVLLLELLTGKAPNQHSLGEEGIDLPRWVQSVVREEWTAEVFDAELLRFHNIEEEMVQLLQIAMSCVSTVPDQRPAMPEVVRMIEDMNRSETDDGLRQSSDDPSKGSDVNTPPAESRTPPRVITP 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 33507000 33511774 - MC08g_new0643 Mch8g3115 696736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g3115 652 ProSiteProfiles Protein kinase domain profile. 346 614 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch8g3115 652 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 421 625 - -
Mch8g3115 652 PANTHER OS05G0588300 PROTEIN 9 621 IPR050994 -
Mch8g3115 652 MobiDBLite consensus disorder prediction 613 652 - -
Mch8g3115 652 Gene3D Ribonuclease Inhibitor 25 183 IPR032675 -
Mch8g3115 652 FunFam Probable inactive receptor kinase RLK902 25 183 - -
Mch8g3115 652 Pfam Leucine Rich Repeat 117 138 IPR001611 GO:0005515(InterPro)
Mch8g3115 652 Pfam Leucine Rich Repeat 92 114 IPR001611 GO:0005515(InterPro)
Mch8g3115 652 Pfam Leucine Rich Repeat 186 207 IPR001611 GO:0005515(InterPro)
Mch8g3115 652 Pfam Leucine Rich Repeat 140 162 IPR001611 GO:0005515(InterPro)
Mch8g3115 652 SUPERFAMILY Protein kinase-like (PK-like) 350 611 IPR011009 -
Mch8g3115 652 Gene3D Ribonuclease Inhibitor 184 231 IPR032675 -
Mch8g3115 652 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
Mch8g3115 652 MobiDBLite consensus disorder prediction 613 628 - -
Mch8g3115 652 SUPERFAMILY L domain-like 27 211 - -
Mch8g3115 652 Gene3D Phosphorylase Kinase; domain 1 315 420 - -
Mch8g3115 652 FunFam pollen receptor-like kinase 1 316 420 - -
Mch8g3115 652 Gene3D Transferase(Phosphotransferase) domain 1 421 634 - -
Mch8g3115 652 Pfam Protein kinase domain 350 609 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1228 Mch-Chr1:14622470 Mch8g3115 Mch-Chr8:33507000 1.27E-70 dispersed
Mch3g1575 Mch-Chr3:17751555 Mch8g3115 Mch-Chr8:33507000 1.20E-140 dispersed
Mch6g1931 Mch-Chr6:21803876 Mch8g3115 Mch-Chr8:33507000 2.18E-158 dispersed
Mch8g2297 Mch-Chr8:26130326 Mch8g3115 Mch-Chr8:33507000 6.99E-128 dispersed
Mch8g3115 Mch-Chr8:33507000 Mch9g1940 Mch-Chr9:20871966 8.49E-116 dispersed
Mch10g0333 Mch-Chr10:2207522 Mch8g3115 Mch-Chr8:33507000 8.32E-74 transposed
Mch6g0772 Mch-Chr6:5336821 Mch8g3115 Mch-Chr8:33507000 1.24E-180 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77647 PF00069 Pkinase 3.10E-35 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g3115 - - - 0.0