Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g3154 ATGGGGGAAGAAGATACCGCGGGTGCGCCTCAGAAGAAGGCTCAATCAGATGGTGCGGCGTTGAGTAACTCATCGTCATCGGATATTCCGTCTAAGAAGCTCGCTCGGCAGCTCGATTTCACCGGCTTTGGAGGGGCGTCGCATCCTCAATCTCATACAAACTCGCATTCACAGTCACCGGCTTCATTAGTTGCTCAGAGTCTTCCGCAAGCTCAGCCGAAGCTACAGGCGCAGATGGCGGCGGCGTCGATCGCACCTCTGGCGCCTAATTCGTCAGTAAGAGCTGTGAAACCAGAATCACCAATGTCAAGAGCAAGACCTGCTGCCGAAGCTAAAGATAGTACTCCTAAGAAGCAAAAACAGTGTAACTGTAAACATTCGCGATGTCTAAAATTGTATTGTGAATGCTTTGCTTCTGGAATATACTGTGATGGTTGCAACTGCATAAATTGTTATAACAATGTTGAAAATGATGCTGCTCGAAGAGAAGCAGTTGAAGCCACATTAGAGCGTAATCCAAATGCATTTCGACCAAAAATTGCAAGCAGTCCCCATGGGATGCGGGACAATAGGGAGGAAGCGGGGGAGTTGCTGATGTTGGGTAAGCACAACAAGGGATGCCACTGCAAGAAATCGGGTTGTCTAAAAAAATATTGTGAGTGTTTCCAGGCCAACATTCTCTGCTCGGAAAATTGTAAATGCATGGACTGCAAGAATTTCGAGGGAAGTGAAGAGAGACAAGCTCTTTTCCATGGAGACCATGGTAACAACATGGCATTCATTCAACAGGCAGCTAATGCTGCCATAACTGGGGCAATTGGGTCCTCTGGCTATGCTTCACCTCCAGTATCCAAAAAAAGAAAAGGTCAAGAACTCTACTTTGGACCGACAGCCAAGGATCTATCCACTCATAGACCAGTGCCATTTCAACAGGCAAATCATATCAGAACCTCTGCTCCTTCGCTATCGTCTTTCCCTGTTCCTGGTGTTGGAACCCCATCATTGTTGGGTCCTTCAAAGTTTACATATAGGTCTTTAATGGCAGACATCATTCAATCGCAAGATTTGAAGGATCTTTGCTCTGTTTTGGTTGTGCTGTCAAGTGAAGCTGCCAAGACATTTCAAGATCAAAGAAATGCTACAGAAAAGCAAGCTGACTGTCAGACGGAAGCTTCTGTTGCTTCATCCACTCAAGATAGGTTGCAGAAAAAAGATGTATCCGATGAGAAAGCTGCAGCTGATGATCGTTCGAGTGCAAACCAGGCCGATAAAACCACTCCTGATGACTCCAATTCAGATGGTGGAGATGTGTCGAAAGCTGCACCCATGTCTCCTGGAACTTTAGCTTTGATGTGTGACGAGCAAGATACAATATTAATGGCTGCTGCTTCCCCCAATAGATTAATGGGTCCAGGCTGCAGCACTTCTTCACAACTGCCTCACAGACAAGACATGTCAGAGGTCTATGCAGAGCAGGAGAGGATCATCCTTACGAAGTTTCGGGATTGTCTTAATCGACTCATCACTTTGGGAGAAATAAAAGAGACACAGTGTTCATCTTTAGCCAGAAATGAAGTAGGTAATCAAGAACAACAATTCAACAATGGCACTACGGCTTCTAGAACTGAGACTCAAACTCATCTGGGCCAACTCAACAATAAAGTTGCGAAATCTTCGATCCCACCGTCGGTGAAGACATCCCAGGCAACGGTAACTTCAGCAGTCATGACCCTTAGTAACGATCAGCGACAAAAAGTTTTGCCTCTGTCTTGA 1773 45.91 MGEEDTAGAPQKKAQSDGAALSNSSSSDIPSKKLARQLDFTGFGGASHPQSHTNSHSQSPASLVAQSLPQAQPKLQAQMAAASIAPLAPNSSVRAVKPESPMSRARPAAEAKDSTPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCINCYNNVENDAARREAVEATLERNPNAFRPKIASSPHGMRDNREEAGELLMLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHGNNMAFIQQAANAAITGAIGSSGYASPPVSKKRKGQELYFGPTAKDLSTHRPVPFQQANHIRTSAPSLSSFPVPGVGTPSLLGPSKFTYRSLMADIIQSQDLKDLCSVLVVLSSEAAKTFQDQRNATEKQADCQTEASVASSTQDRLQKKDVSDEKAAADDRSSANQADKTTPDDSNSDGGDVSKAAPMSPGTLALMCDEQDTILMAAASPNRLMGPGCSTSSQLPHRQDMSEVYAEQERIILTKFRDCLNRLITLGEIKETQCSSLARNEVGNQEQQFNNGTTASRTETQTHLGQLNNKVAKSSIPPSVKTSQATVTSAVMTLSNDQRQKVLPLS 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 33805255 33810112 - MC08g2502 Mch8g3154 696775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g3154 590 MobiDBLite consensus disorder prediction 375 400 - -
Mch8g3154 590 MobiDBLite consensus disorder prediction 401 417 - -
Mch8g3154 590 MobiDBLite consensus disorder prediction 375 442 - -
Mch8g3154 590 PANTHER TESMIN/TSO1-RELATED 24 518 IPR028307 GO:0005634(PANTHER)|GO:0006355(PANTHER)
Mch8g3154 590 MobiDBLite consensus disorder prediction 44 77 - -
Mch8g3154 590 MobiDBLite consensus disorder prediction 1 77 - -
Mch8g3154 590 MobiDBLite consensus disorder prediction 418 433 - -
Mch8g3154 590 SMART CXC_2 117 157 IPR033467 -
Mch8g3154 590 SMART CXC_2 202 243 IPR033467 -
Mch8g3154 590 ProSiteProfiles CRC domain profile. 118 242 IPR005172 -
Mch8g3154 590 MobiDBLite consensus disorder prediction 16 32 - -
Mch8g3154 590 MobiDBLite consensus disorder prediction 91 119 - -
Mch8g3154 590 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 119 154 IPR005172 -
Mch8g3154 590 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 205 239 IPR005172 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch7g1046 Mch-Chr7:14572056 Mch8g3154 Mch-Chr8:33805255 1.49E-34 dispersed
Mch8g1146 Mch-Chr8:8161049 Mch8g3154 Mch-Chr8:33805255 6.09E-09 dispersed
Mch6g0818 Mch-Chr6:5677047 Mch8g3154 Mch-Chr8:33805255 2.29E-214 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43967 PF03638 TCR 3.10E-12 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g3154 - - - 0.0