Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g3154 ATGGGGGAAGAAGATACCGCGGGTGCGCCTCAGAAGAAGGCTCAATCAGATGGTGCGGCGTTGAGTAACTCATCGTCATCGGATATTCCGTCTAAGAAGCTCGCTCGGCAGCTCGATTTCACCGGCTTTGGAGGGGCGTCGCATCCTCAATCTCATACAAACTCGCATTCACAGTCACCGGCTTCATTAGTTGCTCAGAGTCTTCCGCAAGCTCAGCCGAAGCTACAGGCGCAGATGGCGGCGGCGTCGATCGCACCTCTGGCGCCTAATTCGTCAGTAAGAGCTGTGAAACCAGAATCACCAATGTCAAGAGCAAGACCTGCTGCCGAAGCTAAAGATAGTACTCCTAAGAAGCAAAAACAGTGTAACTGTAAACATTCGCGATGTCTAAAATTGTATTGTGAATGCTTTGCTTCTGGAATATACTGTGATGGTTGCAACTGCATAAATTGTTATAACAATGTTGAAAATGATGCTGCTCGAAGAGAAGCAGTTGAAGCCACATTAGAGCGTAATCCAAATGCATTTCGACCAAAAATTGCAAGCAGTCCCCATGGGATGCGGGACAATAGGGAGGAAGCGGGGGAGTTGCTGATGTTGGGTAAGCACAACAAGGGATGCCACTGCAAGAAATCGGGTTGTCTAAAAAAATATTGTGAGTGTTTCCAGGCCAACATTCTCTGCTCGGAAAATTGTAAATGCATGGACTGCAAGAATTTCGAGGGAAGTGAAGAGAGACAAGCTCTTTTCCATGGAGACCATGGTAACAACATGGCATTCATTCAACAGGCAGCTAATGCTGCCATAACTGGGGCAATTGGGTCCTCTGGCTATGCTTCACCTCCAGTATCCAAAAAAAGAAAAGGTCAAGAACTCTACTTTGGACCGACAGCCAAGGATCTATCCACTCATAGACCAGTGCCATTTCAACAGGCAAATCATATCAGAACCTCTGCTCCTTCGCTATCGTCTTTCCCTGTTCCTGGTGTTGGAACCCCATCATTGTTGGGTCCTTCAAAGTTTACATATAGGTCTTTAATGGCAGACATCATTCAATCGCAAGATTTGAAGGATCTTTGCTCTGTTTTGGTTGTGCTGTCAAGTGAAGCTGCCAAGACATTTCAAGATCAAAGAAATGCTACAGAAAAGCAAGCTGACTGTCAGACGGAAGCTTCTGTTGCTTCATCCACTCAAGATAGGTTGCAGAAAAAAGATGTATCCGATGAGAAAGCTGCAGCTGATGATCGTTCGAGTGCAAACCAGGCCGATAAAACCACTCCTGATGACTCCAATTCAGATGGTGGAGATGTGTCGAAAGCTGCACCCATGTCTCCTGGAACTTTAGCTTTGATGTGTGACGAGCAAGATACAATATTAATGGCTGCTGCTTCCCCCAATAGATTAATGGGTCCAGGCTGCAGCACTTCTTCACAACTGCCTCACAGACAAGACATGTCAGAGGTCTATGCAGAGCAGGAGAGGATCATCCTTACGAAGTTTCGGGATTGTCTTAATCGACTCATCACTTTGGGAGAAATAAAAGAGACACAGTGTTCATCTTTAGCCAGAAATGAAGTAGGTAATCAAGAACAACAATTCAACAATGGCACTACGGCTTCTAGAACTGAGACTCAAACTCATCTGGGCCAACTCAACAATAAAGTTGCGAAATCTTCGATCCCACCGTCGGTGAAGACATCCCAGGCAACGGTAACTTCAGCAGTCATGACCCTTAGTAACGATCAGCGACAAAAAGTTTTGCCTCTGTCTTGA 1773 45.91 MGEEDTAGAPQKKAQSDGAALSNSSSSDIPSKKLARQLDFTGFGGASHPQSHTNSHSQSPASLVAQSLPQAQPKLQAQMAAASIAPLAPNSSVRAVKPESPMSRARPAAEAKDSTPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCINCYNNVENDAARREAVEATLERNPNAFRPKIASSPHGMRDNREEAGELLMLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHGNNMAFIQQAANAAITGAIGSSGYASPPVSKKRKGQELYFGPTAKDLSTHRPVPFQQANHIRTSAPSLSSFPVPGVGTPSLLGPSKFTYRSLMADIIQSQDLKDLCSVLVVLSSEAAKTFQDQRNATEKQADCQTEASVASSTQDRLQKKDVSDEKAAADDRSSANQADKTTPDDSNSDGGDVSKAAPMSPGTLALMCDEQDTILMAAASPNRLMGPGCSTSSQLPHRQDMSEVYAEQERIILTKFRDCLNRLITLGEIKETQCSSLARNEVGNQEQQFNNGTTASRTETQTHLGQLNNKVAKSSIPPSVKTSQATVTSAVMTLSNDQRQKVLPLS 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 33805255 33810112 - MC08g2502 Mch8g3154 696775

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g3154 590 MobiDBLite consensus disorder prediction 375 400 - -
Mch8g3154 590 MobiDBLite consensus disorder prediction 401 417 - -
Mch8g3154 590 MobiDBLite consensus disorder prediction 375 442 - -
Mch8g3154 590 PANTHER TESMIN/TSO1-RELATED 24 518 IPR028307 GO:0005634(PANTHER)|GO:0006355(PANTHER)
Mch8g3154 590 MobiDBLite consensus disorder prediction 44 77 - -
Mch8g3154 590 MobiDBLite consensus disorder prediction 1 77 - -
Mch8g3154 590 MobiDBLite consensus disorder prediction 418 433 - -
Mch8g3154 590 SMART CXC_2 117 157 IPR033467 -
Mch8g3154 590 SMART CXC_2 202 243 IPR033467 -
Mch8g3154 590 ProSiteProfiles CRC domain profile. 118 242 IPR005172 -
Mch8g3154 590 MobiDBLite consensus disorder prediction 16 32 - -
Mch8g3154 590 MobiDBLite consensus disorder prediction 91 119 - -
Mch8g3154 590 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 119 154 IPR005172 -
Mch8g3154 590 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 205 239 IPR005172 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g3154 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch7g1046 Mch-Chr7:14572056 Mch8g3154 Mch-Chr8:33805255 1.49E-34 dispersed
Mch8g1146 Mch-Chr8:8161049 Mch8g3154 Mch-Chr8:33805255 6.09E-09 dispersed
Mch6g0818 Mch-Chr6:5677047 Mch8g3154 Mch-Chr8:33805255 2.29E-214 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch8g3154 . 93 519 CPP Transcription Factor Family AT2G20110 61.6 4.4e-141 498.4
Mch6g0818 . 102 548 CPP Transcription Factor Family AT2G20110 54.7 8.0e-127 451.1
Mch8g3154 . 90 526 CPP Transcription Factor Family AT4G29000 64.6 1.6e-155 546.6
Mch6g0818 . 103 550 CPP Transcription Factor Family AT4G29000 58.5 4.8e-141 498.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002094 2 3 2 1 2 2 4 2 2 2 0 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 3 2 1 65
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43967 PF03638 TCR 3.10E-12 No_clan Mch TF