Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g3167 ACAATGCCCGACAACGACTCCCTCTCCGCTTCCTCCTCTCCGGCCACCCACGGCAGCGCCCGCTCCAAGAAGCGGGGCCGCGAACCGATGGCGGCGAACAGCCGCCACCCGGTGTACCGTGGGGTCCGAATGCGGGCGTGGGGAAAATGGGTTTCCGAGATTCGCGAGCCGAAGAAAAAGAGCCGGATCTGGCTCGGCACCTTCGCCACCCCCGAAATGGCGGCGCGTGCGCATGACGTGGCAGCACTCACCATCAAAGGCAACTCCGCCATCCTCAACTTCCCGGAGCTCGCCGCCTCCTTCCCCCGCCCCGCCTCCTCCTCCCCACGCGACGTCCAGTCCGCCGCCGCCAAGGCCGCCTCCATGGATCACCCGCCGCCGACCTCCGAGCCCGACGAGTACTCCACGCCGGACGAACTCAGCCAAATCGTCGAGCTCCCGAGTCTGGGAACGAGTTACGAGGACTCGCCCGAGTCGGTGACGGAGTTCGTGTGCTCCGAGTCGTCGGACGAGTGGCTGTATAGTTACCAGCCGTGGTATCACAATCGCACCGCTAAAGAAGAAGAAGAAGAAGAAATTAGTTACGGATATTTTTGGGATCAAATGGGAATGCCGGAAAATGAGTGTGTGATTCCCGCTGCCTTTCATCCTTTCTCGTGG 660 62.27 TMPDNDSLSASSSPATHGSARSKKRGREPMAANSRHPVYRGVRMRAWGKWVSEIREPKKKSRIWLGTFATPEMAARAHDVAALTIKGNSAILNFPELAASFPRPASSSPRDVQSAAAKAASMDHPPPTSEPDEYSTPDELSQIVELPSLGTSYEDSPESVTEFVCSESSDEWLYSYQPWYHNRTAKEEEEEEISYGYFWDQMGMPENECVIPAAFHPFSW 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 33895417 33896076 + MC08g2513 Mch8g3167 696788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g3167 220 Gene3D AP2/ERF domain 38 96 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g3167 220 MobiDBLite consensus disorder prediction 1 37 - -
Mch8g3167 220 MobiDBLite consensus disorder prediction 102 137 - -
Mch8g3167 220 CDD AP2 39 97 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g3167 220 ProSiteProfiles AP2/ERF domain profile. 38 95 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g3167 220 PRINTS Ethylene responsive element binding protein signature 39 50 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g3167 220 PRINTS Ethylene responsive element binding protein signature 61 77 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g3167 220 Pfam AP2 domain 37 87 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g3167 220 SUPERFAMILY DNA-binding domain 38 96 IPR016177 GO:0003677(InterPro)
Mch8g3167 220 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 22 165 IPR051032 -
Mch8g3167 220 SMART rav1_2 38 101 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g3167 220 MobiDBLite consensus disorder prediction 1 19 - -
Mch8g3167 220 FunFam Ethylene-responsive transcription factor 2 37 96 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0822 Mch-Chr11:5536246 Mch8g3167 Mch-Chr8:33895417 1.08E-24 dispersed
Mch8g0669 Mch-Chr8:4757508 Mch8g3167 Mch-Chr8:33895417 1.93E-23 dispersed
Mch8g3167 Mch-Chr8:33895417 Mch9g0319 Mch-Chr9:2386528 5.01E-48 dispersed
Mch6g0844 Mch-Chr6:5837127 Mch8g3167 Mch-Chr8:33895417 3.05E-72 wgd
Mch8g1202 Mch-Chr8:8570775 Mch8g3167 Mch-Chr8:33895417 5.45E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43968 PF00847 AP2 5.10E-14 CL0081 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g3167 K09286 - csv:101212945 268.47