Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g3187 ATGTCGTGGCAAACGTATGTGGATGACCATTTGATGTGCGACATCGATGGCCAAGGCCAGCACCTCACCGCCTCTGCCATTGTCGGCCATGATGGCAGCGTCTGGGCTCAGAGCTCTTCATTTCCTCAGTTCAAGCCTCAGGAGATCACTGGTATCATGAAGGATTTTGATGAACCGGGTCATCTTGCACCTACTGGATTACACCTTGGAGGTACAAAGTACATGGTAATCCAAGGAGAGCCTGGAGCGGTCATCCGTGGAAAAAAGGGGTCTGGAGGGATTACCATAAAGAAGACTGGTCAAGCTCTAGTTTTTGGAATTTACGAAGAACCTGTTACTCCAGGACAGTGCAACATGGTCGTTGAGAGGCTGGGGGATTACCTCGTCGATCAGGGTCTCTAG 402 50.5 MSWQTYVDDHLMCDIDGQGQHLTASAIVGHDGSVWAQSSSFPQFKPQEITGIMKDFDEPGHLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMVVERLGDYLVDQGL 133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 34047132 34049244 - MC08g_new0659 Mch8g3187 696808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g3187 133 Pfam Profilin 1 132 IPR048278 GO:0003779(InterPro)
Mch8g3187 133 Gene3D Dynein light chain 2a, cytoplasmic 1 133 - -
Mch8g3187 133 PRINTS Plant profilin signature 29 42 IPR005455 GO:0003779(InterPro)
Mch8g3187 133 PRINTS Plant profilin signature 73 82 IPR005455 GO:0003779(InterPro)
Mch8g3187 133 PRINTS Plant profilin signature 119 132 IPR005455 GO:0003779(InterPro)
Mch8g3187 133 PRINTS Plant profilin signature 54 68 IPR005455 GO:0003779(InterPro)
Mch8g3187 133 PRINTS Plant profilin signature 106 119 IPR005455 GO:0003779(InterPro)
Mch8g3187 133 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779(InterPro)
Mch8g3187 133 PRINTS Plant profilin signature 86 101 IPR005455 GO:0003779(InterPro)
Mch8g3187 133 PRINTS Profilin signature 66 80 IPR005455 GO:0003779(InterPro)
Mch8g3187 133 PRINTS Profilin signature 3 12 IPR005455 GO:0003779(InterPro)
Mch8g3187 133 PRINTS Profilin signature 42 62 IPR005455 GO:0003779(InterPro)
Mch8g3187 133 PRINTS Profilin signature 102 115 IPR005455 GO:0003779(InterPro)
Mch8g3187 133 PRINTS Profilin signature 115 132 IPR005455 GO:0003779(InterPro)
Mch8g3187 133 PRINTS Profilin signature 23 32 IPR005455 GO:0003779(InterPro)
Mch8g3187 133 SMART prof_2 1 133 IPR005455 GO:0003779(InterPro)
Mch8g3187 133 CDD PROF 2 132 IPR005455 GO:0003779(InterPro)
Mch8g3187 133 PANTHER PROFILIN 1 132 IPR005455 GO:0003779(InterPro)|GO:0003785(PANTHER)|GO:0005938(PANTHER)|GO:0042989(PANTHER)
Mch8g3187 133 FunFam Profilin 1 133 - -
Mch8g3187 133 SUPERFAMILY Profilin (actin-binding protein) 2 132 IPR036140 -
Mch8g3187 133 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g3187 Mch-Chr8:34047132 Mch9g0297 Mch-Chr9:2211957 2.05E-80 dispersed
Mch8g1219 Mch-Chr8:8733036 Mch8g3187 Mch-Chr8:34047132 2.54E-76 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g3187 K05759 - csv:101219322 258.84