Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g3187 ATGTCGTGGCAAACGTATGTGGATGACCATTTGATGTGCGACATCGATGGCCAAGGCCAGCACCTCACCGCCTCTGCCATTGTCGGCCATGATGGCAGCGTCTGGGCTCAGAGCTCTTCATTTCCTCAGTTCAAGCCTCAGGAGATCACTGGTATCATGAAGGATTTTGATGAACCGGGTCATCTTGCACCTACTGGATTACACCTTGGAGGTACAAAGTACATGGTAATCCAAGGAGAGCCTGGAGCGGTCATCCGTGGAAAAAAGGGGTCTGGAGGGATTACCATAAAGAAGACTGGTCAAGCTCTAGTTTTTGGAATTTACGAAGAACCTGTTACTCCAGGACAGTGCAACATGGTCGTTGAGAGGCTGGGGGATTACCTCGTCGATCAGGGTCTCTAG 402 50.5 MSWQTYVDDHLMCDIDGQGQHLTASAIVGHDGSVWAQSSSFPQFKPQEITGIMKDFDEPGHLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMVVERLGDYLVDQGL 133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 34047132 34049244 - MC08g_new0659 Mch8g3187 696808

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g3187 133 Pfam Profilin 1 132 IPR048278 GO:0003779(InterPro)
Mch8g3187 133 Gene3D Dynein light chain 2a, cytoplasmic 1 133 - -
Mch8g3187 133 PRINTS Plant profilin signature 29 42 IPR005455 GO:0003779(InterPro)
Mch8g3187 133 PRINTS Plant profilin signature 73 82 IPR005455 GO:0003779(InterPro)
Mch8g3187 133 PRINTS Plant profilin signature 119 132 IPR005455 GO:0003779(InterPro)
Mch8g3187 133 PRINTS Plant profilin signature 54 68 IPR005455 GO:0003779(InterPro)
Mch8g3187 133 PRINTS Plant profilin signature 106 119 IPR005455 GO:0003779(InterPro)
Mch8g3187 133 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779(InterPro)
Mch8g3187 133 PRINTS Plant profilin signature 86 101 IPR005455 GO:0003779(InterPro)
Mch8g3187 133 PRINTS Profilin signature 66 80 IPR005455 GO:0003779(InterPro)
Mch8g3187 133 PRINTS Profilin signature 3 12 IPR005455 GO:0003779(InterPro)
Mch8g3187 133 PRINTS Profilin signature 42 62 IPR005455 GO:0003779(InterPro)
Mch8g3187 133 PRINTS Profilin signature 102 115 IPR005455 GO:0003779(InterPro)
Mch8g3187 133 PRINTS Profilin signature 115 132 IPR005455 GO:0003779(InterPro)
Mch8g3187 133 PRINTS Profilin signature 23 32 IPR005455 GO:0003779(InterPro)
Mch8g3187 133 SMART prof_2 1 133 IPR005455 GO:0003779(InterPro)
Mch8g3187 133 CDD PROF 2 132 IPR005455 GO:0003779(InterPro)
Mch8g3187 133 PANTHER PROFILIN 1 132 IPR005455 GO:0003779(InterPro)|GO:0003785(PANTHER)|GO:0005938(PANTHER)|GO:0042989(PANTHER)
Mch8g3187 133 FunFam Profilin 1 133 - -
Mch8g3187 133 SUPERFAMILY Profilin (actin-binding protein) 2 132 IPR036140 -
Mch8g3187 133 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g3187 K05759 - - csv:101219322 258.84
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g3187 Mch-Chr8:34047132 Mch9g0297 Mch-Chr9:2211957 2.05E-80 dispersed
Mch8g1219 Mch-Chr8:8733036 Mch8g3187 Mch-Chr8:34047132 2.54E-76 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch5g1440 . 1 378 Cytoskeleton Gene Families AT2G37620 96.8 3.2e-215 744.2
Mch1g0721 . 1 378 Cytoskeleton Gene Families AT2G37620 96.3 4.6e-214 740.3
Mch2g0904 . 1 378 Cytoskeleton Gene Families AT2G37620 96.0 7.8e-214 739.6
Mch2g1792 . 1 378 Cytoskeleton Gene Families AT2G37620 95.5 1.7e-213 738.4
Mch9g1563 . 1 378 Cytoskeleton Gene Families AT2G37620 96.0 1.7e-213 738.4
Mch4g2154 . 1 378 Cytoskeleton Gene Families AT2G37620 96.0 1.9e-212 734.9
Mch1g1037 . 3 218 Cytoskeleton Gene Families AT2G37620 96.3 4.3e-119 424.9
Mch1g1038 . 1 108 Cytoskeleton Gene Families AT2G37620 94.4 2.8e-54 209.5
Mch9g1563 . 1 378 Cytoskeleton Gene Families AT5G59370 96.8 4.6e-214 740.3
Mch2g0904 . 1 378 Cytoskeleton Gene Families AT5G59370 96.8 1.0e-213 739.2
Mch5g1440 . 1 378 Cytoskeleton Gene Families AT5G59370 96.8 1.3e-213 738.8
Mch4g2154 . 1 378 Cytoskeleton Gene Families AT5G59370 96.6 3.0e-213 737.6
Mch1g0721 . 1 378 Cytoskeleton Gene Families AT5G59370 96.6 6.6e-213 736.5
Mch2g1792 . 1 378 Cytoskeleton Gene Families AT5G59370 94.4 2.4e-210 728.0
Mch1g1037 . 3 218 Cytoskeleton Gene Families AT5G59370 95.8 3.6e-118 421.8
Mch1g1038 . 1 108 Cytoskeleton Gene Families AT5G59370 93.5 5.3e-53 205.3
Mch9g1563 . 1 378 Cytoskeleton Gene Families AT3G46520 97.1 2.1e-214 741.5
Mch5g1440 . 1 378 Cytoskeleton Gene Families AT3G46520 97.1 6.0e-214 740.0
Mch4g2154 . 1 378 Cytoskeleton Gene Families AT3G46520 96.8 1.3e-213 738.8
Mch2g0904 . 1 378 Cytoskeleton Gene Families AT3G46520 96.6 3.0e-213 737.6
Mch1g0721 . 1 378 Cytoskeleton Gene Families AT3G46520 96.3 1.9e-212 734.9
Mch2g1792 . 1 378 Cytoskeleton Gene Families AT3G46520 94.7 1.1e-210 729.2
Mch1g1037 . 3 218 Cytoskeleton Gene Families AT3G46520 96.3 1.2e-118 423.3
Mch1g1038 . 1 108 Cytoskeleton Gene Families AT3G46520 93.5 5.3e-53 205.3
Mch5g1440 . 1 378 Cytoskeleton Gene Families AT3G12110 97.4 1.1e-215 745.7
Mch2g0904 . 1 378 Cytoskeleton Gene Families AT3G12110 96.8 5.4e-215 743.4
Mch9g1563 . 1 378 Cytoskeleton Gene Families AT3G12110 96.6 2.1e-214 741.5
Mch1g0721 . 1 378 Cytoskeleton Gene Families AT3G12110 96.6 3.5e-214 740.7
Mch4g2154 . 1 378 Cytoskeleton Gene Families AT3G12110 96.6 1.0e-213 739.2
Mch2g1792 . 1 378 Cytoskeleton Gene Families AT3G12110 95.5 6.6e-213 736.5
Mch1g1037 . 3 217 Cytoskeleton Gene Families AT3G12110 96.3 6.2e-118 421.0
Mch1g1038 . 1 108 Cytoskeleton Gene Families AT3G12110 96.3 2.5e-55 213.0
Mch2g1792 . 1 378 Cytoskeleton Gene Families AT3G18780 93.1 3.4e-209 724.2
Mch5g1440 . 1 378 Cytoskeleton Gene Families AT3G18780 92.3 7.6e-209 723.0
Mch9g1563 . 1 378 Cytoskeleton Gene Families AT3G18780 92.3 2.2e-208 721.5
Mch4g2154 . 1 378 Cytoskeleton Gene Families AT3G18780 91.8 8.4e-208 719.5
Mch1g0721 . 1 378 Cytoskeleton Gene Families AT3G18780 92.1 1.1e-207 719.2
Mch2g0904 . 1 378 Cytoskeleton Gene Families AT3G18780 91.8 1.9e-207 718.4
Mch1g1037 . 3 218 Cytoskeleton Gene Families AT3G18780 92.6 1.7e-115 412.9
Mch1g1038 . 1 108 Cytoskeleton Gene Families AT3G18780 95.4 2.2e-54 209.9
Mch2g1792 . 1 378 Cytoskeleton Gene Families AT1G49240 93.4 1.2e-209 725.7
Mch5g1440 . 1 378 Cytoskeleton Gene Families AT1G49240 92.6 2.6e-209 724.5
Mch9g1563 . 1 378 Cytoskeleton Gene Families AT1G49240 92.6 7.6e-209 723.0
Mch4g2154 . 1 378 Cytoskeleton Gene Families AT1G49240 92.1 2.9e-208 721.1
Mch1g0721 . 1 378 Cytoskeleton Gene Families AT1G49240 91.8 2.4e-207 718.0
Mch2g0904 . 1 378 Cytoskeleton Gene Families AT1G49240 91.5 4.2e-207 717.2
Mch1g1037 . 3 218 Cytoskeleton Gene Families AT1G49240 92.6 1.7e-115 412.9
Mch1g1038 . 1 108 Cytoskeleton Gene Families AT1G49240 95.4 2.2e-54 209.9
Mch2g1792 . 1 378 Cytoskeleton Gene Families AT5G09810 98.4 5.8e-217 750.0
Mch5g1440 . 1 378 Cytoskeleton Gene Families AT5G09810 96.6 2.7e-214 741.1
Mch9g1563 . 1 378 Cytoskeleton Gene Families AT5G09810 95.8 5.1e-213 736.9
Mch2g0904 . 1 378 Cytoskeleton Gene Families AT5G09810 95.8 6.6e-213 736.5
Mch1g0721 . 1 378 Cytoskeleton Gene Families AT5G09810 95.8 1.1e-212 735.7
Mch4g2154 . 1 378 Cytoskeleton Gene Families AT5G09810 95.2 2.8e-211 731.1
Mch1g1037 . 3 218 Cytoskeleton Gene Families AT5G09810 98.6 1.3e-120 429.9
Mch1g1038 . 1 108 Cytoskeleton Gene Families AT5G09810 98.1 1.1e-55 214.2
Mch8g3187 . 1 134 Cytoskeleton Gene Families AT2G19760 76.9 8.0e-57 216.5
Mch9g0297 . 1 132 Cytoskeleton Gene Families AT2G19760 72.7 2.2e-54 208.4
Mch8g1219 . 1 131 Cytoskeleton Gene Families AT2G19760 71.8 1.1e-53 206.1
Mch8g3187 . 1 134 Cytoskeleton Gene Families AT4G29350 76.1 3.1e-56 214.5
Mch9g0297 . 1 132 Cytoskeleton Gene Families AT4G29350 74.2 9.8e-55 209.5
Mch8g1219 . 1 131 Cytoskeleton Gene Families AT4G29350 71.0 1.2e-52 202.6
Mch8g3187 . 1 134 Cytoskeleton Gene Families AT4G29340 85.2 8.2e-65 243.0
Mch9g0297 . 1 132 Cytoskeleton Gene Families AT4G29340 73.3 9.1e-56 213.0
Mch8g1219 . 1 131 Cytoskeleton Gene Families AT4G29340 70.1 2.1e-52 201.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000501 4 6 1 4 4 2 6 4 2 3 2 1 3 3 3 6 2 7 7 3 3 3 2 4 5 5 3 6 4 4 112