Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g3193 ATGAAGATCGTGGAATTGGAAGACGCGGGGAATGATCGGGATAACGAGGTCGGTAGTGGTCAGATTGTGAAGGTCGATGCCAAGAGAGCGTTGGTTGGGGCTGGGGCTCGGATTCTGTTTTACCCTACCCTTTTGTATAACGTGCTTCGGAACAAAATGGAATCTGAATTCAGATGGTGGGATGAAGTCGATCAGTTTCTGTTGCTGGGTGCAGTGCCCTTCCCCAAAGATGTGCCGAGATTGAAGCAGCTCGGTGTTGGTGGCGTTATCACTCTCAATGAATCTTATGAAACACTAGTTCCATCTTCCTTATATTATCGCCATGGAATTGACCACTTAACAATCCCCACGAGAGACTATTGTTTTGCTCCTAAATTTTCTGATATTAGCCGAGCTGTGGACTTTATTCACAGAAATGCATCGTGTGGTAAAACAACATACGTTCATTGTAAAGCAGGACGAGGACGGAGCACGACCATTGTGCTTTGTTATTTGGTCAAATACAAGCACATGACACCATCTGCTGCTCTGGAATACGTTCGCTCCAGAAGACCTCGAGTGTTGCTCGCCCCCTCACAGTGGGAGGCTGTTCAAGAATACAGCAACCGCGGACCAGTTACGAGTTCATGGTCAACCTCAGGAGGGGATGCAGTCCTCATTACAAAAGCCGATCTAGAAGGATATCACAGTACGTGCAACGACAGTGCAGGTAGAGAACTCGCAATTGTCACTAGGGTGGCTAAGGCGAAGCCCATGATAGCAAGGTTGTCCTGCCTCTTTTCCTCTTTGAAAGTTCCTGGCAGTGGTGGATCTCTTATCAAACGTTTGCCCGTGTCGGAGGCTCGTGCGTGTTGA 855 48.19 MKIVELEDAGNDRDNEVGSGQIVKVDAKRALVGAGARILFYPTLLYNVLRNKMESEFRWWDEVDQFLLLGAVPFPKDVPRLKQLGVGGVITLNESYETLVPSSLYYRHGIDHLTIPTRDYCFAPKFSDISRAVDFIHRNASCGKTTYVHCKAGRGRSTTIVLCYLVKYKHMTPSAALEYVRSRRPRVLLAPSQWEAVQEYSNRGPVTSSWSTSGGDAVLITKADLEGYHSTCNDSAGRELAIVTRVAKAKPMIARLSCLFSSLKVPGSGGSLIKRLPVSEARAC 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 34080581 34083721 + MC08g2534 Mch8g3193 696814

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g3193 284 ProSitePatterns Tyrosine specific protein phosphatases active site. 148 158 IPR016130 GO:0016311(InterPro)
Mch8g3193 284 CDD PTPMT1 59 203 IPR044596 GO:0004721(InterPro)
Mch8g3193 284 Pfam Dual specificity phosphatase, catalytic domain 81 202 IPR000340 GO:0016311(InterPro)
Mch8g3193 284 ProSiteProfiles Dual specificity protein phosphatase domain profile. 59 206 IPR020422 GO:0006470(InterPro)
Mch8g3193 284 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 127 195 IPR000387 GO:0016311(InterPro)
Mch8g3193 284 PANTHER PHOSPHATIDYLINOSITOL PHOSPHATASE 1 256 - -
Mch8g3193 284 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 52 201 IPR029021 -
Mch8g3193 284 Gene3D Protein tyrosine phosphatase superfamily 59 204 IPR029021 -
Mch8g3193 284 FunFam Dual specificity phosphatase domain protein 59 205 - -
Mch8g3193 284 SMART dsp_5 62 203 IPR020422 GO:0006470(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g3193 - - - - 0.0
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch1g1234 . 33 603 Protein tyrosine phosphatase (PTP) family AT3G50110 60.8 1.1e-188 656.8
Mch4g0722 . 48 619 Protein tyrosine phosphatase (PTP) family AT3G50110 58.2 1.5e-180 629.8
Mch8g2431 . 1 398 Protein tyrosine phosphatase (PTP) family AT5G39400 66.7 3.4e-154 541.6
Mch4g2000 . 1 856 Protein tyrosine phosphatase (PTP) family AT3G10550 69.3 0.0e+00 1183.3
Mch4g2000 . 1 856 Protein tyrosine phosphatase (PTP) family AT5G04540 66.5 0.0e+00 1120.5
Mch6g0629 . 1 1248 Protein tyrosine phosphatase (PTP) family AT5G58160 55.5 0.0e+00 1087.8
Mch6g0258 . 3 314 Protein tyrosine phosphatase (PTP) family AT5G58160 55.1 8.4e-95 345.9
Mch11g1552 . 86 376 Protein tyrosine phosphatase (PTP) family AT1G71860 66.2 1.7e-111 399.4
Mch1g0184 . 21 920 Protein tyrosine phosphatase (PTP) family AT5G23720 64.5 0.0e+00 1077.4
Mch4g0086 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 77.5 1.2e-71 266.2
Mch9g1831 . 96 373 Protein tyrosine phosphatase (PTP) family AT3G52180 70.5 5.3e-114 407.5
Mch9g1401 . 20 277 Protein tyrosine phosphatase (PTP) family AT3G10940 66.4 2.7e-102 368.6
Mch8g1510 . 254 702 Protein tyrosine phosphatase (PTP) family AT3G01510 72.2 1.8e-201 698.7
Mch2g0685 . 9 231 Protein tyrosine phosphatase (PTP) family AT2G32960 62.9 9.5e-78 287.0
Mch4g0093 . 10 243 Protein tyrosine phosphatase (PTP) family AT2G32960 59.8 9.8e-75 276.9
Mch8g3193 . 17 264 Protein tyrosine phosphatase (PTP) family AT2G35680 55.8 1.2e-80 297.0
Mch8g3193 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 51.0 8.2e-47 183.7
Mch2g0685 . 43 230 Protein tyrosine phosphatase (PTP) family AT4G03960 68.6 2.1e-72 268.9
Mch4g0093 . 43 242 Protein tyrosine phosphatase (PTP) family AT4G03960 62.5 4.0e-68 254.6
Mch6g1423 . 5 185 Protein tyrosine phosphatase (PTP) family AT4G03960 53.6 4.3e-54 208.0
Mch6g1423 . 7 216 Protein tyrosine phosphatase (PTP) family AT3G02800 67.0 4.0e-79 291.2
Mch2g0685 . 40 224 Protein tyrosine phosphatase (PTP) family AT3G02800 55.1 2.2e-53 205.7
Mch9g1591 . 1 187 Protein tyrosine phosphatase (PTP) family AT3G55270 66.7 1.8e-63 241.1
Mch8g2431 . 1 398 Protein tyrosine phosphatase (PTP) family AT5G39400 66.7 3.4e-154 541.6
Mch4g0722 . 38 619 Protein tyrosine phosphatase (PTP) family AT3G19420 66.1 6.3e-221 763.8
Mch1g1234 . 33 603 Protein tyrosine phosphatase (PTP) family AT3G19420 61.8 1.7e-197 686.0
Mch1g1234 . 33 603 Protein tyrosine phosphatase (PTP) family AT3G50110 60.8 1.1e-188 656.8
Mch4g0722 . 48 619 Protein tyrosine phosphatase (PTP) family AT3G50110 58.2 1.5e-180 629.8
Mch6g0629 . 1 1248 Protein tyrosine phosphatase (PTP) family AT5G58160 55.5 0.0e+00 1087.8
Mch6g0258 . 3 314 Protein tyrosine phosphatase (PTP) family AT5G58160 55.1 8.4e-95 345.9
Mch4g2000 . 1 856 Protein tyrosine phosphatase (PTP) family AT3G10550 69.3 0.0e+00 1183.3
Mch4g2000 . 1 856 Protein tyrosine phosphatase (PTP) family AT5G04540 66.5 0.0e+00 1120.5
Mch10g1638 . 10 319 Protein tyrosine phosphatase (PTP) family AT2G35320 61.9 9.2e-112 400.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006019 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 4 1 38