Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g3199 ATGATGATCGGCGAGCAACCTAACCGCCCTAATCCGACGGTTCACATTCCTCCATGGACGTTTCACGAGGATCCGGCGTCGGACGTGTACAGTCGGTCGCCGAGGAGCGGCAGCGGCTCCAGCCAGTACGACGGATGTTCCAGCAGAGGCGGATACTCTTCTTATTATCTGCAGGAAGCATTGGCAGTCCTACAGCGGTACCTGCCGTTGAATGAGGCGGAGGCAGATTCGGATTTTGATGTTTCAGGTCGGGAGCCGGATTCTCCTGTGGATACGTACTCCTCCGATCAGTTCCGAATGTATGAGTTCAAGATTAAGAAGTGTACGCGAGGGAGATCGCATGACTGGACTGAGTGTCCGTTCGCTCATCCCGGCGAGAAGGCTCGCCGGAGAGATCCGAGGAGGTATTACTATTCTGGTACGGCGTGTGCGGATTTTCGGAAGGGGAACTGTAAGAAGGGAGAGGCGTGTGAGTTCGCTCATGGTGTTTTCGAGTGCTGGCTTCATCCGGCTCGTTATCGGACTCAGCCATGCAAGGACGGGACGAGCTGCCGGAGAAGAGTCTGCTTCTTCGCTCATACGCCGGAGCAACTTAGGGTTCTGCCTCAGCAGAGTCCTCGGAGTACAAGCTCTATCCCTTCGTACGACGGCTCGCCTCTCCGACAAGCAATTGAGGCCTGTGCGAAACAAATGCCCTTTTTATCGTCTCCGGGGACATCGCCGCCGGTGTCTCCTCGAATCGAGTCTCCACCGCACTCGCCGATGATTAAATCTCTAAATCGACCACTCGGAACAAGTCCGATCAACGAAATGGTGGCGTCGCTGCGAAGTATACAGCTAAGTAGGGAACTCGGCAAGGTGCAATCTCCTTCTTCGTCGTGGAATGTTCAGATCGGATCTTCTGTATTCGGATCTCCGAAGGAATCCGCCGCCCGATCCGGCTTCGGTAGCCTTCCAGATACTCCGACGCATCCAGGCCTCCGGTATCTCGATTTCTGGGATCTCGGTTGCGGAGAGGAACCGAAGATGGAGCGGGTGGAGTCCGGGAGAAATCTACGAGCAAAAATGCTGGAGAAATTGAGGAAGGAAAACTCCGTCGGCTGCGGCGATCAGGATACATACGGTGGCGGCGGCGGCGGCGTGGATGTCGGTTGGGTCTCGGAGCTGCTCAAGTAA 1176 55.78 MMIGEQPNRPNPTVHIPPWTFHEDPASDVYSRSPRSGSGSSQYDGCSSRGGYSSYYLQEALAVLQRYLPLNEAEADSDFDVSGREPDSPVDTYSSDQFRMYEFKIKKCTRGRSHDWTECPFAHPGEKARRRDPRRYYYSGTACADFRKGNCKKGEACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQQSPRSTSSIPSYDGSPLRQAIEACAKQMPFLSSPGTSPPVSPRIESPPHSPMIKSLNRPLGTSPINEMVASLRSIQLSRELGKVQSPSSSWNVQIGSSVFGSPKESAARSGFGSLPDTPTHPGLRYLDFWDLGCGEEPKMERVESGRNLRAKMLEKLRKENSVGCGDQDTYGGGGGGVDVGWVSELLK 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 34150729 34153036 + MC08g2540 Mch8g3199 696820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g3199 391 MobiDBLite consensus disorder prediction 1 47 - -
Mch8g3199 391 PANTHER UNKEMPT FAMILY MEMBER 36 391 IPR045234 -
Mch8g3199 391 MobiDBLite consensus disorder prediction 31 47 - -
Mch8g3199 391 SMART c3hfinal6 172 195 IPR000571 GO:0046872(InterPro)
Mch8g3199 391 SMART c3hfinal6 137 163 IPR000571 GO:0046872(InterPro)
Mch8g3199 391 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 162 IPR000571 GO:0046872(InterPro)
Mch8g3199 391 FunFam Zinc finger CCCH domain-containing protein 66 95 163 - -
Mch8g3199 391 Gene3D - 138 201 - -
Mch8g3199 391 ProSiteProfiles Zinc finger C3H1-type profile. 137 164 IPR000571 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0396 Mch-Chr11:2510719 Mch8g3199 Mch-Chr8:34150729 2.17E-96 dispersed
Mch4g0140 Mch-Chr4:937309 Mch8g3199 Mch-Chr8:34150729 2.02E-72 dispersed
Mch8g0594 Mch-Chr8:4229834 Mch8g3199 Mch-Chr8:34150729 3.18E-72 dispersed
Mch8g0932 Mch-Chr8:6663184 Mch8g3199 Mch-Chr8:34150729 2.62E-56 dispersed
Mch8g3199 Mch-Chr8:34150729 Mch9g1463 Mch-Chr9:17005084 5.87E-54 dispersed
Mch8g3199 Mch-Chr8:34150729 Mch6g0886 Mch-Chr6:6190545 1.55E-151 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43969 PF00642 zf-CCCH 4.30E-05 CL0537 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g3199 - - - 0.0