Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch8g3226 | ATGACGTCGGTGGCGGTTGCCGTTAATGGCGGAAGGGGCGGCGGCGGCGGAAGCAGACGCGCCGTCAGATGGGCCGTCGAGAATCTGTTGCCAACCGCCGATCGTTTCATCTTGGTTCACGTTATGCCCAAAATCACCTCCATCCCCACCCCAATGGGGGATCGTGTGGCTGTGTCGGAGTTAGACGCCGACGTGGTAGCACTGTACGTTCACGATGTGAAGGAGAAATATGAACAAGTTTTTGCCCCTTTTAAGAAGTTATGTAGAAGAGAAAAGTTTCTTCTTTTGGTAGAGACTTTGGTTTTGGAGGATGACAATCCTGCCACTGCGCTTCTTAGATATGTATCTGAGTCTGGGATTAAACGCTTGGTTTTGGGTTCTTGTTTTAGAAGCTGCATAGCAAGGAAGCTAAAAGGGCCTTCAGTACCCTCTGCTATTCTGAGAGCTGCTCCTGCTTCTTTTGATATCTATGTTATATATAAGGGAAGAGTCATCACAAGACCAACCGCTACTGCTCCATCTACTGAAACAGACTCGAGGCAGTGGATGCTCGGTGATACCGATTACTACCGCGGCTCTGGTGCCATTAGCGAACAATCGTCTGCAACTTTCTCTTCTTCTTCAGTGTCGAATGTTCATCAAAGGGGTGATAGCCTTGAAGGCAATTCTACCGAGCAACTGAACTCTTTGAGTACTCTGACTGAGGAGATGGAATTTTGTCACCATTCATGTGGTAATGAGGCAATGCATCGATCCGGTGAGTTCTTAAATAAAGGTCCTGAATTGCAGGAAGATATGCGGGCTGAAGTCGAATCACTGCAACTAGAATTAGAAACCACCGTTTCGTTGTACAAACGAGCTTGTGAAGAACTAGTACATGCTCAAAAGCAGGTTCAGTCACTTACGTCTGAATGCCTTGAAGAATCAAGGAGAGTGAGTGAGGCCTTAGAAAGGGAACAAGCTTTGAGAACAGTTGCTTCTGAAGAAAAAGCAAAGCACCTGGAAGCCATGAAGGAGCTGGAAGAGGCAAAAGATTTGCTGGCTAAAGAGGCTTATGAAAGGCAGCTGGCTGACCTTAATGCCTTAAAGGAGTCCGTGGAGAAGCAGAAAATTGTTGATACTCTTCTCACTAATGACAGGAGGTACAGAAGATATACCCCAGCTGAAATAGAAGCAGCGACGAATTTCTTCGAACAAGTTAACGTGATCGGCGAGGGAGGATATGGGAAAGTTTACCGATGCAGTCTTGATCATACCCCTGTTGCTATTAAGGTTCTTCAACACGACGTACTCGAGAAAAAGGACGAGTTTCTGAAAGAGGTTGAAATTCTGAGCCAAATACGCCATCCACACGTGGTTTTACTGCTTGGAGCTTGCCCCGAGCAAGGTTGCTTGATCTATGAGTACATGGAAAATGGAAGCCTAGATGATCATATCTTGCTCCGGAATGGAAAAACTCCACTGCCTTGGTTTGTTAGATTTAGAATAGCTTTTCAAGTAGCTTCTGGGCTTGCATTTTTACACAATTCAAACCCAGAGCCTATAATTCACAGAGATCTAAAACCGGGTAATATCTTACTAGACAGAAACTATGTAAGCAAAATCTCAGATGTGGGGATGGCTAAGATCATTGGCGATATCGTGCCCGACAATGTCACGGAGTACAGAAACACCATTCTTGCTGGAACTCTCCATTACATGGATCCTGAGTATCAGAGAACTGGCACCCTCCGACCAAAGTCGGATACGTATGCTCTTGGAGTAACAATTCTGCAGCTGTTGACAGGGCGGCAGCCACATGGTCTTCTTCTCGCTGTTGAGAGTTCCATCGCAAGTTCCTCCCTCGGAGATATTCTAGATAGATCAATTACTGACTGGCCTCTGGCTGAAGCCGAAGTGCTAGCTCGACTTGCGCTGAAGTGCTTGAAACTTAGATGCAGGGATAGGCCAGATCTTGATACTGAAGTTCTTCCAGTTCTTAAAAGACTTGTTGATTTTGCAGATGCTTGTCAAAATGAAGAAAAGTGTCCTGCCAATCCCCCGAGCCACTACTTCTGCCCAATCCTTCAGGAAATAATGAATGATCCTTATATAGCAGCAGATGGGTTTACTTACGAGTACGTAGCGATTAAAGCGTGGCTCGAGAAACATGACTTATCGCCCGTGACAAAGCTTAAGCTCCAGCATTCTATGTTTATTCCAAACCATACTCTGCGTTCTGCCATACAGGAATGGAGGTCAAGAGTGACATTTCCATCTTCC | 2262 | 45.8 | MTSVAVAVNGGRGGGGGSRRAVRWAVENLLPTADRFILVHVMPKITSIPTPMGDRVAVSELDADVVALYVHDVKEKYEQVFAPFKKLCRREKFLLLVETLVLEDDNPATALLRYVSESGIKRLVLGSCFRSCIARKLKGPSVPSAILRAAPASFDIYVIYKGRVITRPTATAPSTETDSRQWMLGDTDYYRGSGAISEQSSATFSSSSVSNVHQRGDSLEGNSTEQLNSLSTLTEEMEFCHHSCGNEAMHRSGEFLNKGPELQEDMRAEVESLQLELETTVSLYKRACEELVHAQKQVQSLTSECLEESRRVSEALEREQALRTVASEEKAKHLEAMKELEEAKDLLAKEAYERQLADLNALKESVEKQKIVDTLLTNDRRYRRYTPAEIEAATNFFEQVNVIGEGGYGKVYRCSLDHTPVAIKVLQHDVLEKKDEFLKEVEILSQIRHPHVVLLLGACPEQGCLIYEYMENGSLDDHILLRNGKTPLPWFVRFRIAFQVASGLAFLHNSNPEPIIHRDLKPGNILLDRNYVSKISDVGMAKIIGDIVPDNVTEYRNTILAGTLHYMDPEYQRTGTLRPKSDTYALGVTILQLLTGRQPHGLLLAVESSIASSSLGDILDRSITDWPLAEAEVLARLALKCLKLRCRDRPDLDTEVLPVLKRLVDFADACQNEEKCPANPPSHYFCPILQEIMNDPYIAADGFTYEYVAIKAWLEKHDLSPVTKLKLQHSMFIPNHTLRSAIQEWRSRVTFPSS | 754 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 34326654 | 34329982 | + | MC08g2564 | Mch8g3226 | 696847 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch8g3226 | 754 | Coils | Coil | 284 | 304 | - | - | |
Mch8g3226 | 754 | Pfam | Protein tyrosine and serine/threonine kinase | 399 | 653 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Mch8g3226 | 754 | ProSiteProfiles | U-box domain profile. | 679 | 752 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Mch8g3226 | 754 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 679 | 750 | IPR013083 | - | |
Mch8g3226 | 754 | Gene3D | HUPs | 1 | 154 | IPR014729 | - | |
Mch8g3226 | 754 | CDD | STK_N | 3 | 162 | - | - | |
Mch8g3226 | 754 | FunFam | Adenine nucleotide alpha hydrolase-like domain kinase | 369 | 469 | - | - | |
Mch8g3226 | 754 | Pfam | U-box domain | 681 | 746 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Mch8g3226 | 754 | Coils | Coil | 323 | 369 | - | - | |
Mch8g3226 | 754 | SUPERFAMILY | RING/U-box | 671 | 748 | - | - | |
Mch8g3226 | 754 | SUPERFAMILY | Protein kinase-like (PK-like) | 380 | 653 | IPR011009 | - | |
Mch8g3226 | 754 | Gene3D | Transferase(Phosphotransferase) domain 1 | 470 | 674 | - | - | |
Mch8g3226 | 754 | SMART | serkin_6 | 397 | 660 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Mch8g3226 | 754 | SMART | Ubox_2 | 683 | 745 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Mch8g3226 | 754 | Pfam | Universal stress protein family | 14 | 152 | IPR006016 | - | |
Mch8g3226 | 754 | SUPERFAMILY | Adenine nucleotide alpha hydrolases-like | 2 | 151 | - | - | |
Mch8g3226 | 754 | PANTHER | OS02G0152300 PROTEIN | 4 | 743 | IPR051348 | - | |
Mch8g3226 | 754 | ProSitePatterns | Protein kinases ATP-binding region signature. | 403 | 424 | IPR017441 | GO:0005524(InterPro) | |
Mch8g3226 | 754 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 515 | 527 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Mch8g3226 | 754 | ProSiteProfiles | Protein kinase domain profile. | 397 | 660 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Mch8g3226 | 754 | MobiDBLite | consensus disorder prediction | 206 | 226 | - | - | |
Mch8g3226 | 754 | FunFam | Os07g0541700 protein | 470 | 560 | - | - | |
Mch8g3226 | 754 | Gene3D | Phosphorylase Kinase; domain 1 | 376 | 469 | - | - | |
Mch8g3226 | 754 | CDD | RING-Ubox_WDSUB1-like | 681 | 735 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch7g0670 | Mch-Chr7:11369338 | Mch8g3226 | Mch-Chr8:34326654 | 2.65E-71 | dispersed | |
Mch8g3226 | Mch-Chr8:34326654 | Mch3g0010 | Mch-Chr3:81591 | 4.10E-52 | dispersed | |
Mch6g2652 | Mch-Chr6:28210210 | Mch8g3226 | Mch-Chr8:34326654 | 2.01E-152 | transposed | |
Mch8g3226 | Mch-Chr8:34326654 | Mch9g0239 | Mch-Chr9:1808550 | 7.76E-131 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
77653 | PF00069 | Pkinase | 1.90E-40 | CL0016 | Mch | PK |
Pathway information
