Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g3226 ATGACGTCGGTGGCGGTTGCCGTTAATGGCGGAAGGGGCGGCGGCGGCGGAAGCAGACGCGCCGTCAGATGGGCCGTCGAGAATCTGTTGCCAACCGCCGATCGTTTCATCTTGGTTCACGTTATGCCCAAAATCACCTCCATCCCCACCCCAATGGGGGATCGTGTGGCTGTGTCGGAGTTAGACGCCGACGTGGTAGCACTGTACGTTCACGATGTGAAGGAGAAATATGAACAAGTTTTTGCCCCTTTTAAGAAGTTATGTAGAAGAGAAAAGTTTCTTCTTTTGGTAGAGACTTTGGTTTTGGAGGATGACAATCCTGCCACTGCGCTTCTTAGATATGTATCTGAGTCTGGGATTAAACGCTTGGTTTTGGGTTCTTGTTTTAGAAGCTGCATAGCAAGGAAGCTAAAAGGGCCTTCAGTACCCTCTGCTATTCTGAGAGCTGCTCCTGCTTCTTTTGATATCTATGTTATATATAAGGGAAGAGTCATCACAAGACCAACCGCTACTGCTCCATCTACTGAAACAGACTCGAGGCAGTGGATGCTCGGTGATACCGATTACTACCGCGGCTCTGGTGCCATTAGCGAACAATCGTCTGCAACTTTCTCTTCTTCTTCAGTGTCGAATGTTCATCAAAGGGGTGATAGCCTTGAAGGCAATTCTACCGAGCAACTGAACTCTTTGAGTACTCTGACTGAGGAGATGGAATTTTGTCACCATTCATGTGGTAATGAGGCAATGCATCGATCCGGTGAGTTCTTAAATAAAGGTCCTGAATTGCAGGAAGATATGCGGGCTGAAGTCGAATCACTGCAACTAGAATTAGAAACCACCGTTTCGTTGTACAAACGAGCTTGTGAAGAACTAGTACATGCTCAAAAGCAGGTTCAGTCACTTACGTCTGAATGCCTTGAAGAATCAAGGAGAGTGAGTGAGGCCTTAGAAAGGGAACAAGCTTTGAGAACAGTTGCTTCTGAAGAAAAAGCAAAGCACCTGGAAGCCATGAAGGAGCTGGAAGAGGCAAAAGATTTGCTGGCTAAAGAGGCTTATGAAAGGCAGCTGGCTGACCTTAATGCCTTAAAGGAGTCCGTGGAGAAGCAGAAAATTGTTGATACTCTTCTCACTAATGACAGGAGGTACAGAAGATATACCCCAGCTGAAATAGAAGCAGCGACGAATTTCTTCGAACAAGTTAACGTGATCGGCGAGGGAGGATATGGGAAAGTTTACCGATGCAGTCTTGATCATACCCCTGTTGCTATTAAGGTTCTTCAACACGACGTACTCGAGAAAAAGGACGAGTTTCTGAAAGAGGTTGAAATTCTGAGCCAAATACGCCATCCACACGTGGTTTTACTGCTTGGAGCTTGCCCCGAGCAAGGTTGCTTGATCTATGAGTACATGGAAAATGGAAGCCTAGATGATCATATCTTGCTCCGGAATGGAAAAACTCCACTGCCTTGGTTTGTTAGATTTAGAATAGCTTTTCAAGTAGCTTCTGGGCTTGCATTTTTACACAATTCAAACCCAGAGCCTATAATTCACAGAGATCTAAAACCGGGTAATATCTTACTAGACAGAAACTATGTAAGCAAAATCTCAGATGTGGGGATGGCTAAGATCATTGGCGATATCGTGCCCGACAATGTCACGGAGTACAGAAACACCATTCTTGCTGGAACTCTCCATTACATGGATCCTGAGTATCAGAGAACTGGCACCCTCCGACCAAAGTCGGATACGTATGCTCTTGGAGTAACAATTCTGCAGCTGTTGACAGGGCGGCAGCCACATGGTCTTCTTCTCGCTGTTGAGAGTTCCATCGCAAGTTCCTCCCTCGGAGATATTCTAGATAGATCAATTACTGACTGGCCTCTGGCTGAAGCCGAAGTGCTAGCTCGACTTGCGCTGAAGTGCTTGAAACTTAGATGCAGGGATAGGCCAGATCTTGATACTGAAGTTCTTCCAGTTCTTAAAAGACTTGTTGATTTTGCAGATGCTTGTCAAAATGAAGAAAAGTGTCCTGCCAATCCCCCGAGCCACTACTTCTGCCCAATCCTTCAGGAAATAATGAATGATCCTTATATAGCAGCAGATGGGTTTACTTACGAGTACGTAGCGATTAAAGCGTGGCTCGAGAAACATGACTTATCGCCCGTGACAAAGCTTAAGCTCCAGCATTCTATGTTTATTCCAAACCATACTCTGCGTTCTGCCATACAGGAATGGAGGTCAAGAGTGACATTTCCATCTTCC 2262 45.8 MTSVAVAVNGGRGGGGGSRRAVRWAVENLLPTADRFILVHVMPKITSIPTPMGDRVAVSELDADVVALYVHDVKEKYEQVFAPFKKLCRREKFLLLVETLVLEDDNPATALLRYVSESGIKRLVLGSCFRSCIARKLKGPSVPSAILRAAPASFDIYVIYKGRVITRPTATAPSTETDSRQWMLGDTDYYRGSGAISEQSSATFSSSSVSNVHQRGDSLEGNSTEQLNSLSTLTEEMEFCHHSCGNEAMHRSGEFLNKGPELQEDMRAEVESLQLELETTVSLYKRACEELVHAQKQVQSLTSECLEESRRVSEALEREQALRTVASEEKAKHLEAMKELEEAKDLLAKEAYERQLADLNALKESVEKQKIVDTLLTNDRRYRRYTPAEIEAATNFFEQVNVIGEGGYGKVYRCSLDHTPVAIKVLQHDVLEKKDEFLKEVEILSQIRHPHVVLLLGACPEQGCLIYEYMENGSLDDHILLRNGKTPLPWFVRFRIAFQVASGLAFLHNSNPEPIIHRDLKPGNILLDRNYVSKISDVGMAKIIGDIVPDNVTEYRNTILAGTLHYMDPEYQRTGTLRPKSDTYALGVTILQLLTGRQPHGLLLAVESSIASSSLGDILDRSITDWPLAEAEVLARLALKCLKLRCRDRPDLDTEVLPVLKRLVDFADACQNEEKCPANPPSHYFCPILQEIMNDPYIAADGFTYEYVAIKAWLEKHDLSPVTKLKLQHSMFIPNHTLRSAIQEWRSRVTFPSS 754
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 34326654 34329982 + MC08g2564 Mch8g3226 696847

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g3226 754 Coils Coil 284 304 - -
Mch8g3226 754 Pfam Protein tyrosine and serine/threonine kinase 399 653 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch8g3226 754 ProSiteProfiles U-box domain profile. 679 752 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch8g3226 754 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 679 750 IPR013083 -
Mch8g3226 754 Gene3D HUPs 1 154 IPR014729 -
Mch8g3226 754 CDD STK_N 3 162 - -
Mch8g3226 754 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 369 469 - -
Mch8g3226 754 Pfam U-box domain 681 746 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch8g3226 754 Coils Coil 323 369 - -
Mch8g3226 754 SUPERFAMILY RING/U-box 671 748 - -
Mch8g3226 754 SUPERFAMILY Protein kinase-like (PK-like) 380 653 IPR011009 -
Mch8g3226 754 Gene3D Transferase(Phosphotransferase) domain 1 470 674 - -
Mch8g3226 754 SMART serkin_6 397 660 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch8g3226 754 SMART Ubox_2 683 745 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch8g3226 754 Pfam Universal stress protein family 14 152 IPR006016 -
Mch8g3226 754 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 2 151 - -
Mch8g3226 754 PANTHER OS02G0152300 PROTEIN 4 743 IPR051348 -
Mch8g3226 754 ProSitePatterns Protein kinases ATP-binding region signature. 403 424 IPR017441 GO:0005524(InterPro)
Mch8g3226 754 ProSitePatterns Serine/Threonine protein kinases active-site signature. 515 527 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch8g3226 754 ProSiteProfiles Protein kinase domain profile. 397 660 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch8g3226 754 MobiDBLite consensus disorder prediction 206 226 - -
Mch8g3226 754 FunFam Os07g0541700 protein 470 560 - -
Mch8g3226 754 Gene3D Phosphorylase Kinase; domain 1 376 469 - -
Mch8g3226 754 CDD RING-Ubox_WDSUB1-like 681 735 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g3226 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch7g0670 Mch-Chr7:11369338 Mch8g3226 Mch-Chr8:34326654 2.65E-71 dispersed
Mch8g3226 Mch-Chr8:34326654 Mch3g0010 Mch-Chr3:81591 4.10E-52 dispersed
Mch6g2652 Mch-Chr6:28210210 Mch8g3226 Mch-Chr8:34326654 2.01E-152 transposed
Mch8g3226 Mch-Chr8:34326654 Mch9g0239 Mch-Chr9:1808550 7.76E-131 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch8g3226 . 2 748 Plant U-box Gene Family AT5G57035 54.1 5.1e-231 797.7
Mch8g0371 . 227 523 Plant U-box Gene Family AT5G57035 54.9 1.1e-89 328.2
Mch9g1383 . 202 437 Plant U-box Gene Family AT5G05230 59.2 2.4e-71 266.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008876 1 1 1 2 1 0 2 1 1 1 1 0 1 1 1 1 0 0 1 0 1 1 0 1 1 1 1 1 2 1 27
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77653 PF00069 Pkinase 1.90E-40 CL0016 Mch PK