Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g3227 ATGAAGAAGGATAGCTCCATGAATCCTAACTTGAAGCTCATTCTACCTCCTCCTCACGAAGCTTCCTTCGCCAAGTTCATAACCAAGAGTGGTGCTTTCACGGATGGCGATTTGCTTGTCAATAGAGACGGCGTCCGGATTGTTTCTCACAACGAAGACGAAACTCCTCCACCAATAAAGCCCTCAGACAGCCATTTGTCTTTAGCAGATTTAGACTCGATAAAAGTCATCGGAAAAGGAAATGGTGGAATAGTTCAATTAGTCCGACATAAATGGACGAACCAGTTTTTTGCTCTAAAGGTGATTCAAATGAACGCTGAGGAATCTCGTTGCAGGCTGGTTGCGCAGGAACTAAAAATTAATCAGTTGGCACATAACCATTACATTGTGGTCTGTTACCAGATCTTCTATGACAATGGTGCCATTTTCATCATCTTGGAGTACATGGATGGTGGGTCGCTCGCAGATCTTCTAAAACAGGTCAAAACGATTCTGGAGCCGTATCTTGCAGCCATTTGTTACCAAGTACTCAAGGGGTTAATATACCTTCACCATGAAAAACATGTCATCCACAGAGACCTTAAGCCTTCTAATTTGTTGATAAATCATAGAGGGGAAGTTAAGATTACTGATTTTGGTGTTAGCGCTATATTGGCAAGTACATCTGGTCAGGCAAATTCTTTCGTTGGCACATTTCCTTACATGTCTCCCGAGAGAATCAGTGGGGAAAAATATGATAACAGAAGTGACATATGGAGTTTAGGATTGGTGTTGCTAGAATGTGCAACGGGTCAATTTCCTTACACTCCACCGGACAAGGCTAAAGGATGGGGAAGCTTTTATGATGTTATGCTAGCCGTAGTAGATCATGCATCGCCTTCTGCTCCTGAAGAGTTTTCACCAGAGTTTTGCTCTTTCATTTCTTCATGCTTACAGAAAGACCCGCAGAAGAGAAGCTCTGCACGCCAACTTCTGATGCATCCTTTCATCAAAAAGTTCGAACGCTTTGATGTCGATCTCGCAGCTTATTTCAAAGATGCTGGCTCTCCATTGGCAACATTCTAA 1065 42.82 MKKDSSMNPNLKLILPPPHEASFAKFITKSGAFTDGDLLVNRDGVRIVSHNEDETPPPIKPSDSHLSLADLDSIKVIGKGNGGIVQLVRHKWTNQFFALKVIQMNAEESRCRLVAQELKINQLAHNHYIVVCYQIFYDNGAIFIILEYMDGGSLADLLKQVKTILEPYLAAICYQVLKGLIYLHHEKHVIHRDLKPSNLLINHRGEVKITDFGVSAILASTSGQANSFVGTFPYMSPERISGEKYDNRSDIWSLGLVLLECATGQFPYTPPDKAKGWGSFYDVMLAVVDHASPSAPEEFSPEFCSFISSCLQKDPQKRSSARQLLMHPFIKKFERFDVDLAAYFKDAGSPLATF 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 34329790 34333341 - MC08g2565 Mch8g3227 696848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g3227 354 CDD PKc_MAPKK_plant_like 69 334 - -
Mch8g3227 354 FunFam Mitogen-activated protein kinase kinase 1 52 150 - -
Mch8g3227 354 SMART serkin_6 71 330 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch8g3227 354 Gene3D Phosphorylase Kinase; domain 1 50 150 - -
Mch8g3227 354 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524(InterPro)
Mch8g3227 354 SUPERFAMILY Protein kinase-like (PK-like) 57 335 IPR011009 -
Mch8g3227 354 Gene3D Transferase(Phosphotransferase) domain 1 151 349 - -
Mch8g3227 354 ProSiteProfiles Protein kinase domain profile. 71 330 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch8g3227 354 Pfam Protein kinase domain 74 330 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch8g3227 354 FunFam Mitogen-activated protein kinase kinase 6 152 349 - -
Mch8g3227 354 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 26 350 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Mch8g3227 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g0943 Mch-Chr6:6672508 Mch8g3227 Mch-Chr8:34329790 2.47E-183 dispersed
Mch8g3227 Mch-Chr8:34329790 Mch3g1072 Mch-Chr3:14233192 1.23E-26 dispersed
Mch8g1481 Mch-Chr8:11163807 Mch8g3227 Mch-Chr8:34329790 9.30E-76 transposed
Mch8g3186 Mch-Chr8:34037596 Mch8g3227 Mch-Chr8:34329790 2.10E-144 transposed
Mch6g0941 Mch-Chr6:6647365 Mch8g3227 Mch-Chr8:34329790 3.43E-19 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77654 PF00069 Pkinase 6.90E-69 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g3227 K20603 - csv:101206374 621.313