Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g3227 ATGAAGAAGGATAGCTCCATGAATCCTAACTTGAAGCTCATTCTACCTCCTCCTCACGAAGCTTCCTTCGCCAAGTTCATAACCAAGAGTGGTGCTTTCACGGATGGCGATTTGCTTGTCAATAGAGACGGCGTCCGGATTGTTTCTCACAACGAAGACGAAACTCCTCCACCAATAAAGCCCTCAGACAGCCATTTGTCTTTAGCAGATTTAGACTCGATAAAAGTCATCGGAAAAGGAAATGGTGGAATAGTTCAATTAGTCCGACATAAATGGACGAACCAGTTTTTTGCTCTAAAGGTGATTCAAATGAACGCTGAGGAATCTCGTTGCAGGCTGGTTGCGCAGGAACTAAAAATTAATCAGTTGGCACATAACCATTACATTGTGGTCTGTTACCAGATCTTCTATGACAATGGTGCCATTTTCATCATCTTGGAGTACATGGATGGTGGGTCGCTCGCAGATCTTCTAAAACAGGTCAAAACGATTCTGGAGCCGTATCTTGCAGCCATTTGTTACCAAGTACTCAAGGGGTTAATATACCTTCACCATGAAAAACATGTCATCCACAGAGACCTTAAGCCTTCTAATTTGTTGATAAATCATAGAGGGGAAGTTAAGATTACTGATTTTGGTGTTAGCGCTATATTGGCAAGTACATCTGGTCAGGCAAATTCTTTCGTTGGCACATTTCCTTACATGTCTCCCGAGAGAATCAGTGGGGAAAAATATGATAACAGAAGTGACATATGGAGTTTAGGATTGGTGTTGCTAGAATGTGCAACGGGTCAATTTCCTTACACTCCACCGGACAAGGCTAAAGGATGGGGAAGCTTTTATGATGTTATGCTAGCCGTAGTAGATCATGCATCGCCTTCTGCTCCTGAAGAGTTTTCACCAGAGTTTTGCTCTTTCATTTCTTCATGCTTACAGAAAGACCCGCAGAAGAGAAGCTCTGCACGCCAACTTCTGATGCATCCTTTCATCAAAAAGTTCGAACGCTTTGATGTCGATCTCGCAGCTTATTTCAAAGATGCTGGCTCTCCATTGGCAACATTCTAA 1065 42.82 MKKDSSMNPNLKLILPPPHEASFAKFITKSGAFTDGDLLVNRDGVRIVSHNEDETPPPIKPSDSHLSLADLDSIKVIGKGNGGIVQLVRHKWTNQFFALKVIQMNAEESRCRLVAQELKINQLAHNHYIVVCYQIFYDNGAIFIILEYMDGGSLADLLKQVKTILEPYLAAICYQVLKGLIYLHHEKHVIHRDLKPSNLLINHRGEVKITDFGVSAILASTSGQANSFVGTFPYMSPERISGEKYDNRSDIWSLGLVLLECATGQFPYTPPDKAKGWGSFYDVMLAVVDHASPSAPEEFSPEFCSFISSCLQKDPQKRSSARQLLMHPFIKKFERFDVDLAAYFKDAGSPLATF 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 34329790 34333341 - MC08g2565 Mch8g3227 696848

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g3227 354 CDD PKc_MAPKK_plant_like 69 334 - -
Mch8g3227 354 FunFam Mitogen-activated protein kinase kinase 1 52 150 - -
Mch8g3227 354 SMART serkin_6 71 330 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch8g3227 354 Gene3D Phosphorylase Kinase; domain 1 50 150 - -
Mch8g3227 354 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524(InterPro)
Mch8g3227 354 SUPERFAMILY Protein kinase-like (PK-like) 57 335 IPR011009 -
Mch8g3227 354 Gene3D Transferase(Phosphotransferase) domain 1 151 349 - -
Mch8g3227 354 ProSiteProfiles Protein kinase domain profile. 71 330 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch8g3227 354 Pfam Protein kinase domain 74 330 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch8g3227 354 FunFam Mitogen-activated protein kinase kinase 6 152 349 - -
Mch8g3227 354 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 26 350 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Mch8g3227 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g3227 K20603 - - csv:101206374 621.313
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g0943 Mch-Chr6:6672508 Mch8g3227 Mch-Chr8:34329790 2.47E-183 dispersed
Mch8g3227 Mch-Chr8:34329790 Mch3g1072 Mch-Chr3:14233192 1.23E-26 dispersed
Mch8g1481 Mch-Chr8:11163807 Mch8g3227 Mch-Chr8:34329790 9.30E-76 transposed
Mch8g3186 Mch-Chr8:34037596 Mch8g3227 Mch-Chr8:34329790 2.10E-144 transposed
Mch6g0941 Mch-Chr6:6647365 Mch8g3227 Mch-Chr8:34329790 3.43E-19 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch6g0943 . 26 351 MAP Kinase Kinase Gene Family AT4G26070 69.6 3.6e-133 471.5
Mch8g3227 . 28 352 MAP Kinase Kinase Gene Family AT4G26070 66.6 2.1e-125 445.7
Mch8g3186 . 26 351 MAP Kinase Kinase Gene Family AT4G26070 55.9 6.2e-109 391.0
Mch6g0943 . 1 324 MAP Kinase Kinase Gene Family AT4G29810 69.5 1.2e-133 473.0
Mch8g3227 . 1 326 MAP Kinase Kinase Gene Family AT4G29810 62.5 4.7e-117 417.9
Mch8g3186 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 60.0 1.1e-110 396.7
Mch8g1481 . 36 510 MAP Kinase Kinase Gene Family AT5G40440 79.3 9.7e-228 786.2
Mch8g1018 . 1 371 MAP Kinase Kinase Gene Family AT1G51660 64.9 7.0e-127 450.7
Mch8g1018 . 1 371 MAP Kinase Kinase Gene Family AT3G21220 65.1 3.0e-127 451.8
Mch3g1570 . 39 310 MAP Kinase Kinase Gene Family AT3G21220 54.8 4.9e-85 311.6
Mch8g3186 . 1 355 MAP Kinase Kinase Gene Family AT5G56580 84.8 3.1e-172 601.3
Mch6g0943 . 10 350 MAP Kinase Kinase Gene Family AT5G56580 58.5 2.9e-117 418.7
Mch8g3227 . 1 341 MAP Kinase Kinase Gene Family AT5G56580 56.9 6.4e-109 391.0
Mch3g1570 . 1 308 MAP Kinase Kinase Gene Family AT1G18350 62.7 8.0e-108 387.1
Mch8g1018 . 73 339 MAP Kinase Kinase Gene Family AT1G18350 51.5 9.6e-77 283.9
Mch3g1570 . 1 296 MAP Kinase Kinase Gene Family AT3G06230 52.6 4.2e-82 301.6
Mch3g1570 . 1 308 MAP Kinase Kinase Gene Family AT1G73500 65.4 4.4e-114 407.9
Mch8g1018 . 80 339 MAP Kinase Kinase Gene Family AT1G73500 52.1 7.4e-77 284.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001594 2 3 1 2 2 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 2 2 2 2 9 2 1 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77654 PF00069 Pkinase 6.90E-69 CL0016 Mch PK