Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch8g3233 | ATGGATGGAGGTGCAGCATACAACCCTCGGACTGTGGAAGAGGTTTTCAGGGACTTTAAGGGCCGTCGTGCCGGAATGATTAGAGCTCTCACCACCGAGAAGGAAAACCTCTGCCTATATGGGTTCCCTAATGAACAGTGGGAAGTTAATTTGCCTGCTGAAGAAGTACCTCCAGAGCTTCCGGAACCAGCATTGGGCATTAACTTTGCTAGAGATGGGATGCAAGAAAAGGATTGGCTATCCCTTGTTGCCGTTCATAGTGACGCATGGCTTCTTGCCGTGGCTTTCTATTTTGGTGCTAGATTTGGCTTTGATAAATCTGACAGGAAACGCCTTTTTACAATGATAAATGACCTACCCACGATATTTGAGGTTGTGACTGGAAACGTGAAGAAACAGGGAAAAGATAAATCATTAGTCACAAATAACAGCAGCAACAAATCCAAGACGGGCTCAAAAGGGCGAGGATCTGAATCAAGCAAATTTCCCAAGGGGTTGGCAAAAGATGAGGATGAGGGAATGGACGAGGAAGATGAAGAGGAGCACGGGGAGACCTTATGTGGGGCGTGCGGAGAGAATTATGCGTCGGACGAGTTTTGGATATGTTGCGACATTTGTGAGAAGTGGTTTCATGGCAAGTGTGTGAAGATCACTCCTGCAAGGGCCGAACATATCAAGCAGTACAAATGCCCCTCGTGCAGCAATAAGAGAGCTCGGCCCTGA | 723 | 47.44 | MDGGAAYNPRTVEEVFRDFKGRRAGMIRALTTEKENLCLYGFPNEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKSDRKRLFTMINDLPTIFEVVTGNVKKQGKDKSLVTNNSSNKSKTGSKGRGSESSKFPKGLAKDEDEGMDEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP | 240 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 34353573 | 34360803 | - | MC08g2571 | Mch8g3233 | 696854 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch8g3233 | 240 | ProSiteProfiles | Zinc finger PHD-type profile. | 184 | 236 | IPR019787 | - | |
Mch8g3233 | 240 | SMART | PHD_3 | 186 | 234 | IPR001965 | - | |
Mch8g3233 | 240 | ProSitePatterns | Zinc finger PHD-type signature. | 187 | 233 | IPR019786 | - | |
Mch8g3233 | 240 | Pfam | Alfin | 11 | 127 | IPR021998 | GO:0006355(InterPro)|GO:0042393(InterPro) | |
Mch8g3233 | 240 | SUPERFAMILY | FYVE/PHD zinc finger | 176 | 237 | IPR011011 | - | |
Mch8g3233 | 240 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 177 | 235 | IPR013083 | - | |
Mch8g3233 | 240 | Pfam | PHD-finger | 187 | 233 | IPR019787 | - | |
Mch8g3233 | 240 | MobiDBLite | consensus disorder prediction | 134 | 178 | - | - | |
Mch8g3233 | 240 | FunFam | PHD finger alfin-like protein | 179 | 235 | - | - | |
Mch8g3233 | 240 | MobiDBLite | consensus disorder prediction | 134 | 157 | - | - | |
Mch8g3233 | 240 | PANTHER | CPG BINDING PROTEIN | 7 | 239 | IPR045104 | GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro) | |
Mch8g3233 | 240 | CDD | PHD_AL_plant | 186 | 236 | IPR044104 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch8g0546 | Mch-Chr8:3936328 | Mch8g3233 | Mch-Chr8:34353573 | 5.09E-146 | dispersed | |
Mch8g3233 | Mch-Chr8:34353573 | Mch9g1466 | Mch-Chr9:17072421 | 2.49E-101 | dispersed | |
Mch6g0951 | Mch-Chr6:6738202 | Mch8g3233 | Mch-Chr8:34353573 | 5.99E-58 | wgd | |
Mch8g3233 | Mch-Chr8:34353573 | Mch9g0232 | Mch-Chr9:1738377 | 9.99E-128 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
43972 | PF12165 | Alfin | 1.70E-56 | No_clan | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch8g3233 | K26274 | - | rcu:8272513 | 417.927 |