Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g3233 ATGGATGGAGGTGCAGCATACAACCCTCGGACTGTGGAAGAGGTTTTCAGGGACTTTAAGGGCCGTCGTGCCGGAATGATTAGAGCTCTCACCACCGAGAAGGAAAACCTCTGCCTATATGGGTTCCCTAATGAACAGTGGGAAGTTAATTTGCCTGCTGAAGAAGTACCTCCAGAGCTTCCGGAACCAGCATTGGGCATTAACTTTGCTAGAGATGGGATGCAAGAAAAGGATTGGCTATCCCTTGTTGCCGTTCATAGTGACGCATGGCTTCTTGCCGTGGCTTTCTATTTTGGTGCTAGATTTGGCTTTGATAAATCTGACAGGAAACGCCTTTTTACAATGATAAATGACCTACCCACGATATTTGAGGTTGTGACTGGAAACGTGAAGAAACAGGGAAAAGATAAATCATTAGTCACAAATAACAGCAGCAACAAATCCAAGACGGGCTCAAAAGGGCGAGGATCTGAATCAAGCAAATTTCCCAAGGGGTTGGCAAAAGATGAGGATGAGGGAATGGACGAGGAAGATGAAGAGGAGCACGGGGAGACCTTATGTGGGGCGTGCGGAGAGAATTATGCGTCGGACGAGTTTTGGATATGTTGCGACATTTGTGAGAAGTGGTTTCATGGCAAGTGTGTGAAGATCACTCCTGCAAGGGCCGAACATATCAAGCAGTACAAATGCCCCTCGTGCAGCAATAAGAGAGCTCGGCCCTGA 723 47.44 MDGGAAYNPRTVEEVFRDFKGRRAGMIRALTTEKENLCLYGFPNEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKSDRKRLFTMINDLPTIFEVVTGNVKKQGKDKSLVTNNSSNKSKTGSKGRGSESSKFPKGLAKDEDEGMDEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 240
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 34353573 34360803 - MC08g2571 Mch8g3233 696854
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mch8g3233 240 ProSiteProfiles Zinc finger PHD-type profile. 184 236 IPR019787 -
Mch8g3233 240 SMART PHD_3 186 234 IPR001965 -
Mch8g3233 240 ProSitePatterns Zinc finger PHD-type signature. 187 233 IPR019786 -
Mch8g3233 240 Pfam Alfin 11 127 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Mch8g3233 240 SUPERFAMILY FYVE/PHD zinc finger 176 237 IPR011011 -
Mch8g3233 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 235 IPR013083 -
Mch8g3233 240 Pfam PHD-finger 187 233 IPR019787 -
Mch8g3233 240 MobiDBLite consensus disorder prediction 134 178 - -
Mch8g3233 240 FunFam PHD finger alfin-like protein 179 235 - -
Mch8g3233 240 MobiDBLite consensus disorder prediction 134 157 - -
Mch8g3233 240 PANTHER CPG BINDING PROTEIN 7 239 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Mch8g3233 240 CDD PHD_AL_plant 186 236 IPR044104 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g0546 Mch-Chr8:3936328 Mch8g3233 Mch-Chr8:34353573 5.09E-146 dispersed
Mch8g3233 Mch-Chr8:34353573 Mch9g1466 Mch-Chr9:17072421 2.49E-101 dispersed
Mch6g0951 Mch-Chr6:6738202 Mch8g3233 Mch-Chr8:34353573 5.99E-58 wgd
Mch8g3233 Mch-Chr8:34353573 Mch9g0232 Mch-Chr9:1738377 9.99E-128 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43972 PF12165 Alfin 1.70E-56 No_clan Mch TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g3233 K26274 - rcu:8272513 417.927