Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g3235 ATGCCGGTGCATCTCACGCCGAATGCAATCTCTGCAATTGTCGCAGGCGACGTTAATTCCAAGCCTCTGGTGCAGGTCCTAGATATCAAGCTCATCGGTAAAACGCAGGAGAGGTATAGCCTTTTTATCTCCGATGCCGTTTCTGCTGAGCATGCTATGCTCGCAACACAGCTTAATGATATTGTTAAGGCTGGACGAATCAAGAAAGGATCCGTTATCCAGTTGATCGATTATGTTTGCAGTCCCGTCCAGGGCCGCAAGATTATTGTTGTGATTTGCCTGGAAACTATTATATTGGACTGTGAGATAATTGGGAATCCAAAATCATCGGCTCAGTCAGATTTTTCTGCGCAAAAGGCAACGCCATCTAGAAATTTAGAGCAATCTGCCAAGGTTGGTAATGGCCATGTGAGTGACAAAAATCCAGTTCATAATGTGCAGAGCTTCCAAGCTACAGTTCAACCTCCATATCAGCCACCTCCAAACTATAAAAACCACGGTGCAATCATTAAGAATGAGGCACCAGCACGTATAATCCCTATAGCTGCATTGAATCCTTATCAGGGACGATGGGCTATAAAGGCAAGAGTTACTGCAAAGGGTGATCTCCGTCGCTACAATAATGCCCGAGGAGATGGAAAAGTTTTCTCTTTTGACCTCCTTGATTCTGATGGAGGAGAGATACGTGTGACCTGCTTCAACGCGGTTGTTGATCGCTTCTACGAGGTCATAGAAGTTGGTAAAGTATACTTGATTTCTAAGGGTAGCCTAAAACCTGCTCAGAAGAACTTCAATCACCTAAAGAATGAATGGGAGGTTTTCTTGGAGGCATCTTCCAGTGTGGAACTTTGCCCAGATGAAGATGATACCATACCAAGACAGCAGTTTTCTTTCAGACCTATCAGTGAAATTGAGAATGCTGAAACCAATTCTATTCTGGATATTATTGGTATTGTAACATCTATCAACCCATCAATTCCTGTGTTGAGAAAAAATGGTATGGAAACTCAAAGAAGAGTTCTGAATTTGAAGGATGCATCTGGCAGGAGTGTTGAGCTGACGCTTTGGGGGGATTTTTGCAACAGAGAAGGTCAAAAACTGCAAGAAATAATTAACTCGGGGCTCTCTCCAATTTTGGCTGTGAAATCTGGGAAGGTAAGTGATTTCACCGGGAAGTCCATTGGGACAATTTCTTCCACTCAGCTTTTCATAGATCCAGATCTTTGCGAGTCTCGCATCTTGAGGGATTGGTACGATGGTGGCGGGAAGAACACTACTTCTGTGTCTATTTCTAAAGAAATAATGCCAGGAGCAGCCAAGAATGAGATTCGGAAGACTGTGTCCCAGATTAAAGATGAAGGTCTTGGGAGATCTGATAAGCCAGATTGGATTACCGTGAAAGCAACAATATCGTTCATCAAAACAGATTCCTTCTGCTACACAGCATGTCCACTAATGATTGGAGATCGACAGTGCAACAAGAAGGTGAACAGATCAGGAAACTCAAAGTGGCTATGTGACAGGTGCAATCAAGAATTTGAGGATTGCGATTACAGATATCTTCTCCAAGCCCAAATCCAAGACCATACTGGATTGACATGGGTGACAGCCTTCCAGGAATCTGGTGAAGAGATTCTGGGTGTCCCAGCCAAGGAGTTGTACGTGTTGAAGTATGAAGAGCAGGATGATGTCAAGTTTGGTGCAATAATCAGGAGTAAAATTTTCGACCAATTTCTGTTCAGGCTCAAAATTAAAGAGGAGATGTATGGGGATGAACAGAGGGTGAAAAATACTGTAGTCAAGGCAGATGGGGTAAACTATTATTTGGAAAGCAAATATATGTTGAATTTGCTTCCAGACTTTTCACGGTAA 1872 43.0 MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGKTQERYSLFISDAVSAEHAMLATQLNDIVKAGRIKKGSVIQLIDYVCSPVQGRKIIVVICLETIILDCEIIGNPKSSAQSDFSAQKATPSRNLEQSAKVGNGHVSDKNPVHNVQSFQATVQPPYQPPPNYKNHGAIIKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEVIEVGKVYLISKGSLKPAQKNFNHLKNEWEVFLEASSSVELCPDEDDTIPRQQFSFRPISEIENAETNSILDIIGIVTSINPSIPVLRKNGMETQRRVLNLKDASGRSVELTLWGDFCNREGQKLQEIINSGLSPILAVKSGKVSDFTGKSIGTISSTQLFIDPDLCESRILRDWYDGGGKNTTSVSISKEIMPGAAKNEIRKTVSQIKDEGLGRSDKPDWITVKATISFIKTDSFCYTACPLMIGDRQCNKKVNRSGNSKWLCDRCNQEFEDCDYRYLLQAQIQDHTGLTWVTAFQESGEEILGVPAKELYVLKYEEQDDVKFGAIIRSKIFDQFLFRLKIKEEMYGDEQRVKNTVVKADGVNYYLESKYMLNLLPDFSR 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 34368673 34397730 - MC08g2573 Mch8g3235 696856

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g3235 623 SUPERFAMILY Nucleic acid-binding proteins 295 426 IPR012340 -
Mch8g3235 623 SUPERFAMILY Nucleic acid-binding proteins 1 106 IPR012340 -
Mch8g3235 623 FunFam Replication protein A subunit 177 286 - -
Mch8g3235 623 Gene3D - 290 430 IPR012340 -
Mch8g3235 623 Gene3D - 177 287 IPR012340 -
Mch8g3235 623 SUPERFAMILY Nucleic acid-binding proteins 177 291 IPR012340 -
Mch8g3235 623 MobiDBLite consensus disorder prediction 110 137 - -
Mch8g3235 623 NCBIfam replication factor-a protein 1 (rpa1) 4 618 IPR004591 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Mch8g3235 623 CDD RPA1_DBD_B 312 419 - -
Mch8g3235 623 CDD RPA1N 9 104 IPR007199 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)
Mch8g3235 623 Gene3D - 431 621 IPR012340 -
Mch8g3235 623 PANTHER REPLICATION FACTOR A 1, RFA1 179 593 IPR004591 GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003684(PANTHER)|GO:0005634(InterPro)|GO:0005662(PANTHER)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006289(PANTHER)|GO:0006310(InterPro)|GO:0007004(PANTHER)|GO:0043047(PANTHER)|GO:0051321(PANTHER)
Mch8g3235 623 SUPERFAMILY Nucleic acid-binding proteins 444 618 IPR012340 -
Mch8g3235 623 CDD RPA1_DBD_C 447 618 IPR047192 -
Mch8g3235 623 FunFam Replication protein A subunit 4 111 - -
Mch8g3235 623 Pfam Replication factor-A C terminal domain 463 614 IPR013955 -
Mch8g3235 623 Pfam OB-fold nucleic acid binding domain 193 263 IPR004365 GO:0003676(InterPro)
Mch8g3235 623 FunFam Replication protein A subunit 290 428 - -
Mch8g3235 623 FunFam Replication protein A subunit 429 620 - -
Mch8g3235 623 Gene3D - 3 111 IPR012340 -
Mch8g3235 623 Pfam Replication protein A OB domain 301 405 IPR031657 -
Mch8g3235 623 CDD RPA1_DBD_A 180 283 - -
Mch8g3235 623 Pfam Replication factor-A protein 1, N-terminal domain 5 97 IPR007199 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g3235 K07466 - - csv:101207583 1139.41
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1720 Mch-Chr10:17201292 Mch8g3235 Mch-Chr8:34368673 3.21E-242 dispersed
Mch6g0297 Mch-Chr6:1947362 Mch8g3235 Mch-Chr8:34368673 5.10E-84 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch6g1154 . 103 796 Core DNA Replication Machinery Family AT4G14700 65.6 5.3e-268 920.6
Mch6g1154 . 103 796 Core DNA Replication Machinery Family AT4G12620 68.3 6.9e-276 946.8
Mch8g0708 . 2 361 Core DNA Replication Machinery Family AT2G37560 67.8 1.9e-145 512.3
Mch9g1918 . 9 377 Core DNA Replication Machinery Family AT2G01120 57.3 2.5e-128 455.7
Mch7g0665 . 4 537 Core DNA Replication Machinery Family AT4G29910 58.2 4.1e-174 608.2
Mch8g1810 . 1 262 Core DNA Replication Machinery Family AT1G26840 67.2 6.7e-93 337.4
Mch4g0034 . 1 801 Core DNA Replication Machinery Family AT1G79150 60.1 1.8e-250 862.4
Mch5g1103 . 1 944 Core DNA Replication Machinery Family AT1G44900 76.0 0.0e+00 1368.6
Mch1g2016 . 1 577 Core DNA Replication Machinery Family AT5G46280 81.0 2.2e-268 921.4
Mch4g0567 . 1 846 Core DNA Replication Machinery Family AT2G16440 75.0 0.0e+00 1179.9
Mch8g3014 . 64 799 Core DNA Replication Machinery Family AT2G07690 78.7 0.0e+00 1116.3
Mch1g2181 . 72 889 Core DNA Replication Machinery Family AT5G44635 69.0 0.0e+00 1120.1
Mch9g0661 . 9 720 Core DNA Replication Machinery Family AT4G02060 85.3 0.0e+00 1217.6
Mch6g0781 . 38 548 Core DNA Replication Machinery Family AT2G29680 56.8 1.8e-152 536.2
Mch6g0781 . 42 509 Core DNA Replication Machinery Family AT1G07270 57.1 4.3e-137 485.0
Mch11g1097 . 1 594 Core DNA Replication Machinery Family AT3G25100 77.4 1.6e-258 888.6
Mch9g0023 . 1 594 Core DNA Replication Machinery Family AT3G25100 75.8 9.0e-257 882.9
Mch5g1783 . 26 792 Core DNA Replication Machinery Family AT3G09660 72.6 1.1e-313 1072.4
Mch2g0991 . 1 415 Core DNA Replication Machinery Family AT2G20980 54.5 2.4e-112 402.5
Mch11g0853 . 1 970 Core DNA Replication Machinery Family AT1G77320 50.8 7.5e-264 907.1
Mch9g0405 . 1 200 Core DNA Replication Machinery Family AT1G80190 67.5 1.4e-76 282.7
Mch11g1327 . 1 197 Core DNA Replication Machinery Family AT1G80190 66.5 5.0e-74 274.2
Mch10g0366 . 1 145 Core DNA Replication Machinery Family AT3G12530 73.1 2.3e-60 228.4
Mch4g2505 . 1 186 Core DNA Replication Machinery Family AT1G19080 69.9 2.5e-72 268.5
Mch4g2505 . 1 186 Core DNA Replication Machinery Family AT3G55490 69.9 2.5e-72 268.5
Mch5g0403 . 16 165 Core DNA Replication Machinery Family AT5G49010 66.7 5.1e-52 201.1
Mch2g1301 . 1 1540 Core DNA Replication Machinery Family AT5G67100 57.4 0.0e+00 1687.2
Mch2g1302 . 5 1373 Core DNA Replication Machinery Family AT5G67100 58.6 0.0e+00 1540.0
Mch7g0712 . 1 482 Core DNA Replication Machinery Family AT5G67100 56.9 6.9e-160 562.4
Mch9g2341 . 2 640 Core DNA Replication Machinery Family AT1G67630 58.3 1.6e-208 722.6
Mch7g0065 . 1 446 Core DNA Replication Machinery Family AT1G67320 63.3 1.2e-177 619.8
Mch11g1789 . 1 448 Core DNA Replication Machinery Family AT5G41880 65.1 4.1e-177 617.8
Mch1g0987 . 7 1086 Core DNA Replication Machinery Family AT5G63960 81.1 0.0e+00 1794.6
Mch5g1437 . 82 530 Core DNA Replication Machinery Family AT2G42120 71.8 7.3e-195 676.8
Mch7g0065 . 1 446 Core DNA Replication Machinery Family AT1G67320 63.3 1.2e-177 619.8
Mch2g0263 . 1 2086 Core DNA Replication Machinery Family AT1G08260 71.5 0.0e+00 2972.6
Mch3g1547 . 1 2051 Core DNA Replication Machinery Family AT1G08260 69.5 0.0e+00 2874.0
Mch2g0263 . 9 2205 Core DNA Replication Machinery Family AT2G27120 67.8 0.0e+00 2946.8
Mch3g1547 . 19 2158 Core DNA Replication Machinery Family AT2G27120 66.4 0.0e+00 2859.3
Mch3g1789 . 7 490 Core DNA Replication Machinery Family AT5G22110 68.5 1.7e-192 669.1
Mch2g0211 . 1 929 Core DNA Replication Machinery Family AT5G22010 62.7 1.0e-307 1052.7
Mch10g1470 . 46 376 Core DNA Replication Machinery Family AT1G63160 90.6 5.9e-173 603.6
Mch1g0517 . 1 355 Core DNA Replication Machinery Family AT5G27740 85.4 1.3e-178 622.5
Mch11g0851 . 1 334 Core DNA Replication Machinery Family AT1G21690 81.5 7.5e-152 533.5
Mch4g1788 . 1 364 Core DNA Replication Machinery Family AT1G77470 75.6 4.0e-154 541.2
Mch8g3235 . 26 618 Core DNA Replication Machinery Family AT2G06510 68.2 1.0e-250 862.8
Mch10g1720 . 34 697 Core DNA Replication Machinery Family AT2G06510 51.3 4.1e-196 681.4
Mch6g0297 . 7 638 Core DNA Replication Machinery Family AT5G08020 67.5 4.0e-244 840.9
Mch10g1720 . 10 800 Core DNA Replication Machinery Family AT5G45400 50.6 4.2e-223 771.5
Mch6g0297 . 7 635 Core DNA Replication Machinery Family AT5G61000 63.7 1.1e-236 816.2
Mch10g1720 . 5 815 Core DNA Replication Machinery Family AT4G19130 52.9 3.2e-225 778.5
Mch11g0615 . 1 274 Core DNA Replication Machinery Family AT2G24490 50.2 8.7e-69 257.3
Mch6g2735 . 1 383 Core DNA Replication Machinery Family AT5G26680 85.9 4.8e-188 654.1
Mch5g0260 . 1 1110 Core DNA Replication Machinery Family AT1G08840 53.2 1.0e-303 1039.6
Mch5g0930 . 1 298 Core DNA Replication Machinery Family AT2G25100 67.1 4.7e-115 411.0
Mch2g0315 . 1 807 Core DNA Replication Machinery Family AT1G08130 66.5 4.8e-298 1020.4
Mch2g0315 . 206 807 Core DNA Replication Machinery Family AT1G49250 68.8 3.4e-241 831.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010255 1 3 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 32