Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g3244 ATGAGCGGAAGGAGCAGTAGGTTCCCATTTACTGCAGCTCAGTGGCAAGAGCTGGAGCACCAAGCTCTCATCTTCAAGTACATGGTCTCCGGCATCCCAGTCCCTCCCGATCTGCTCTACACCATTAAGAGAAGCTCTCTGGATTCTCCCTTCATTTCTAGGCTTTTCCCTCAGCACTATCCAGACGTTGGATGGAACTATTTGCAGATGGGTTCGGGGAGGAAAATCGACCCGGAGCCTGGAAGGTGCAGAAGAACGGATGGCAAAAAATGGAGATGCTCCAAAGAGGCATACCCGGATTCTAAATACTGCGAGAGACATATGCACAGAGGCAAAAACCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACAACAACAACAACAACACCAACAACACCAGCAACAGCTCTTAACTCAAATCCATCCACCCCAGCTATCTCATCCATCACCCAGAACTCCGCCCTCTCTTCTTTACCCTCTGACCCCCATAACCATAACCATTCTTGTTTCAATACTCATTCTCCCCACCCTTTTCTCTACCAACATGGTTCTTCTTCTTCAAGGCCCCCTGGTTCTGCTCTACACCAAAACTCCAATACCTCCATGCTTTTCGACAACCCAGATTACAGAAGAAGAAACAGGTATGTTTATGGGCTGAAGGAAGATGGTGATGAGCATCCTTTTCTGTCGGAAGAACATTCTGGGAACATGAGAGGCTTCTCTGCTTCATCACTGGAAGATTCCTGGCAGCTTACTCCTCTGACAATGAGTTGCTCTTCCTCATCCTCCAGACACAAGAACTGCTCTGCTTTACAAGGGGACTACTCTTCTTACTTGCAGCTGCAGAGTTTTGGCGATTCCCCAAAGCAACTCAAGCAAGAGGAGCATTACTATGAGATGCAGAATAAGATGGGAAGAGAGGAACCCCAGAAGATTATGCATCACTTCTTTGACGAATGGTCTCCGAAAGATAGAGAATCGTGGCTTGATTTGGATGATAAGTCGTCCAATACTGGCTCAGTTTCTGCAACCCGGCTTTCGATGTCTATTTCAAACAACTCATTGCAACATGACTTCTCCTCCATCTTCAATTCCAATAAGCATAATGAAAAC 1113 46.45 MSGRSSRFPFTAAQWQELEHQALIFKYMVSGIPVPPDLLYTIKRSSLDSPFISRLFPQHYPDVGWNYLQMGSGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTTTTTPTTPATALNSNPSTPAISSITQNSALSSLPSDPHNHNHSCFNTHSPHPFLYQHGSSSSRPPGSALHQNSNTSMLFDNPDYRRRNRYVYGLKEDGDEHPFLSEEHSGNMRGFSASSLEDSWQLTPLTMSCSSSSSRHKNCSALQGDYSSYLQLQSFGDSPKQLKQEEHYYEMQNKMGREEPQKIMHHFFDEWSPKDRESWLDLDDKSSNTGSVSATRLSMSISNNSLQHDFSSIFNSNKHNEN 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 34427956 34429334 - MC08g2581 Mch8g3244 696865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g3244 371 MobiDBLite consensus disorder prediction 125 147 - -
Mch8g3244 371 PANTHER GROWTH-REGULATING FACTOR 5 4 351 IPR031137 GO:0005634(InterPro)|GO:0006351(InterPro)|GO:0032502(InterPro)
Mch8g3244 371 MobiDBLite consensus disorder prediction 179 206 - -
Mch8g3244 371 ProSiteProfiles WRC domain profile. 77 121 IPR014977 -
Mch8g3244 371 ProSiteProfiles QLQ domain profile. 9 44 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Mch8g3244 371 Pfam QLQ 9 42 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Mch8g3244 371 Pfam WRC 78 120 IPR014977 -
Mch8g3244 371 MobiDBLite consensus disorder prediction 153 172 - -
Mch8g3244 371 SMART QLQ_2 8 44 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g1029 Mch-Chr8:7258219 Mch8g3244 Mch-Chr8:34427956 2.37E-53 dispersed
Mch5g1644 Mch-Chr5:17271562 Mch8g3244 Mch-Chr8:34427956 2.97E-35 transposed
Mch6g0964 Mch-Chr6:6816675 Mch8g3244 Mch-Chr8:34427956 6.07E-115 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43974 PF08879 WRC 7.80E-21 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g3244 - - - 0.0