Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g3244 ATGAGCGGAAGGAGCAGTAGGTTCCCATTTACTGCAGCTCAGTGGCAAGAGCTGGAGCACCAAGCTCTCATCTTCAAGTACATGGTCTCCGGCATCCCAGTCCCTCCCGATCTGCTCTACACCATTAAGAGAAGCTCTCTGGATTCTCCCTTCATTTCTAGGCTTTTCCCTCAGCACTATCCAGACGTTGGATGGAACTATTTGCAGATGGGTTCGGGGAGGAAAATCGACCCGGAGCCTGGAAGGTGCAGAAGAACGGATGGCAAAAAATGGAGATGCTCCAAAGAGGCATACCCGGATTCTAAATACTGCGAGAGACATATGCACAGAGGCAAAAACCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACAACAACAACAACAACACCAACAACACCAGCAACAGCTCTTAACTCAAATCCATCCACCCCAGCTATCTCATCCATCACCCAGAACTCCGCCCTCTCTTCTTTACCCTCTGACCCCCATAACCATAACCATTCTTGTTTCAATACTCATTCTCCCCACCCTTTTCTCTACCAACATGGTTCTTCTTCTTCAAGGCCCCCTGGTTCTGCTCTACACCAAAACTCCAATACCTCCATGCTTTTCGACAACCCAGATTACAGAAGAAGAAACAGGTATGTTTATGGGCTGAAGGAAGATGGTGATGAGCATCCTTTTCTGTCGGAAGAACATTCTGGGAACATGAGAGGCTTCTCTGCTTCATCACTGGAAGATTCCTGGCAGCTTACTCCTCTGACAATGAGTTGCTCTTCCTCATCCTCCAGACACAAGAACTGCTCTGCTTTACAAGGGGACTACTCTTCTTACTTGCAGCTGCAGAGTTTTGGCGATTCCCCAAAGCAACTCAAGCAAGAGGAGCATTACTATGAGATGCAGAATAAGATGGGAAGAGAGGAACCCCAGAAGATTATGCATCACTTCTTTGACGAATGGTCTCCGAAAGATAGAGAATCGTGGCTTGATTTGGATGATAAGTCGTCCAATACTGGCTCAGTTTCTGCAACCCGGCTTTCGATGTCTATTTCAAACAACTCATTGCAACATGACTTCTCCTCCATCTTCAATTCCAATAAGCATAATGAAAAC 1113 46.45 MSGRSSRFPFTAAQWQELEHQALIFKYMVSGIPVPPDLLYTIKRSSLDSPFISRLFPQHYPDVGWNYLQMGSGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTTTTTPTTPATALNSNPSTPAISSITQNSALSSLPSDPHNHNHSCFNTHSPHPFLYQHGSSSSRPPGSALHQNSNTSMLFDNPDYRRRNRYVYGLKEDGDEHPFLSEEHSGNMRGFSASSLEDSWQLTPLTMSCSSSSSRHKNCSALQGDYSSYLQLQSFGDSPKQLKQEEHYYEMQNKMGREEPQKIMHHFFDEWSPKDRESWLDLDDKSSNTGSVSATRLSMSISNNSLQHDFSSIFNSNKHNEN 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 34427956 34429334 - MC08g2581 Mch8g3244 696865

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g3244 371 MobiDBLite consensus disorder prediction 125 147 - -
Mch8g3244 371 PANTHER GROWTH-REGULATING FACTOR 5 4 351 IPR031137 GO:0005634(InterPro)|GO:0006351(InterPro)|GO:0032502(InterPro)
Mch8g3244 371 MobiDBLite consensus disorder prediction 179 206 - -
Mch8g3244 371 ProSiteProfiles WRC domain profile. 77 121 IPR014977 -
Mch8g3244 371 ProSiteProfiles QLQ domain profile. 9 44 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Mch8g3244 371 Pfam QLQ 9 42 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Mch8g3244 371 Pfam WRC 78 120 IPR014977 -
Mch8g3244 371 MobiDBLite consensus disorder prediction 153 172 - -
Mch8g3244 371 SMART QLQ_2 8 44 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g3244 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g1029 Mch-Chr8:7258219 Mch8g3244 Mch-Chr8:34427956 2.37E-53 dispersed
Mch5g1644 Mch-Chr5:17271562 Mch8g3244 Mch-Chr8:34427956 2.97E-35 transposed
Mch6g0964 Mch-Chr6:6816675 Mch8g3244 Mch-Chr8:34427956 6.07E-115 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch6g0964 . 8 110 GRF Transcription Factor Family AT3G13960 73.8 1.5e-42 170.6
Mch8g3244 . 2 111 GRF Transcription Factor Family AT3G13960 70.3 7.6e-42 168.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002565 3 3 1 2 3 1 4 1 1 1 2 1 4 1 2 3 1 1 3 1 2 2 2 2 2 1 2 3 2 1 58
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43974 PF08879 WRC 7.80E-21 No_clan Mch TF