Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g3259 AATAACTTTTTGTTTGGTTTGAGAACAGGTGAAAGGAAGAATATTAATTCTGAGTTATGGCATGCTTGTGCTGGACCTCTTGTTTCGTTACCTCCAGTTGGAAGTCTTGTGGTTTACTTCCCTCAAGGGCACAGTGAGCAAGTTGCAGCATCGATGAATAAGGAGACTGATTTCATTCCAAACTACCCTAACCTTCCTTCAAAGTTGATCTGCATGCTCCATAATGTCACATTACATGCTGATCCTGAAACTGATGAAGTGTATGCACAAATGACCCTTCAACCAGTGACTAAATATGAAAAAGAAGCTTTATTGGCATCTGATATTGGCCTCAAGCAAAACAGGCAGCCTGCTGAGTTCTTCTGCAAAACACTAACAGCTAGTGATACCAGCACTCATGGTGGATTTTCTGTACCTCGTCGTGCAGCTGAGAAGATTTTTCCCCCATTAGATTACTCGATGCAACCCCCTGCTCAGGAACTGGTGGCTAGAGATTTGCATGATAATTCATGGACATTCAGACATATTTACCGTGGCCAACCAAAAAGGCACCTTCTGACCACTGGTTGGAGTGTTTTTGTTAGCACAAAACGACTCTTTGCTGGAGACTCTGTGCTCTTTATAAGAGATGAAAAGTCACAGCTTCTCTTAGGCATAAGGCGTGCTAATAGGCAGCAGCCAGCTCTCTCTTCATCAGTCATATCAAGTGATAGCATGCACATCGGGATTCTTGCTTCTGCTGCTCATGCTGCTGCAAATAACAGTCCTTTTACTATATTTTACAACCCTAGGGCCAGTCCTTCTGAATTTGTGATTCCTTTGGCCAAGTATAATAAAGCAATGTATACGCAAGTTTCACTTGGCATGCGATTTAGGATGATGTTTGAAACTGAGGAGTCAGGAGTACGCAGATACATGGGCACAATTACTGGTATCAGTGACATGGACTCTCTGCGATGGAAAAATTCACAGTGGCGCAATCTTCAGGTTGGATGGGATGAATCAGCAGCTGGTGAACGACCAAACCGAGTTTCAATATGGGAAGTTGAGCCTGTTGTGACTCCCTTTTACATATGTCCACCTCCATTTTTCAGACCCAAATTCCCTAAACAACCAGGGATGCCAGATGACGAATCTGATATTGAAAATGCTTTTAAGAGAGCCATGCCGTGGTTTGGTGATGACTTTGGCTTGAAAGATACACCAAGCTCAATATTTCCTGGTTTAAGTTTAGTGCAGTGGATGAGCATGCAACACACTAATCAGTTCCCAGCAGCTCAATCTGGAATTTTGCCGTCCATGGTTGCTCCTAGTGCTTTACATGGAACTCTTACTAATGATGACCCGTCTAAATTATTGAGCTTTCAAGCACCAGTATTGTCCTCACCAAATCTCCAATTTAGCAAAGCAAATCAACAGAACCAAGTTGGCCAATTGCCACCAACTACTTGGTCTCAACAGCAGCAGCTGCAGCAATTATTACAAGTTCCTGCAAGCCAACAGTTACAGCATCAGCAGCAGTTGCCACCCCAGCAGGAACTACAACAGCAGCAACTCCAGTCGCAGCAGCTGCCCCAGCAGCAGCAACTCCATTCGCAGCAGCTGCCCCAGCAGCCACAACGACAACAGCAGACCTCCCCATCTGCTCTTCTGAACAATGGTGTATCTGCTGCTAACCATTTGCCAAATCAGAGTTTGCAACAACCACTTGTATATTCTCAGCTACAGCAACGGCAGTTGCTTGCAGGCAATATACAATCACATCAAACTAGCCAACCATCCAATAAAAACTCATTTCAGACTACATCTTTATCGCAAGAAACACAGTTTCAGCCACAAATAGAGCAGCAACCTAGCCTTCTTCCTAGGCAGCAGCAGCAGCAGCAGACACAATTTCAACAGGCCCCACTACAATTATTGCAACAAAGTCTATCTCAAAGACCACAACAGCAGCCACAGGTTCCACAATTTTCACAGCCAATCCCATCAGAACAACTTCAACTGCAGCTGCTGCAGAAGTTGCAGCAACAGCAACAACATCAGCAGCAGCAACCGTTGCTGTCCCCAGCTACCTCACTATTACCACCTCAGCTTCTACAGCAGCAGCATGTCCATCAGCAAAACCAGCAGTTACCGCCATTGCCTTTGTCCAATCAACAACAGTTCAATGCTAATGGAGGCAGCTTCCCAACAGAAAAACTTAACAGCAATGGCTTCTCAAGTTTAGGTCTCATGCAGTCCCAGCAGGTTCCTATAACCCAATCGCATAACCAATTCAAACCAACAATTAGAGCGTATTCTGGACTGACTGATGGAGATGCCCCGTCTTGTTCAACCTCACCTTCCACTAATAATTGCCAAGTTTCTGTATCAAACCTGCTTAATAAGAACCAACAAGTAGCAGCCACTCTGGGGGGAGATTCAGTAGTTGAGCCTGCAACTAATCTGGCCCAGGAGCTACAAAGCAAACCTGATTTGCGGATCAAACCTGAGTTTCCTAACTCAAAAGGATCAGACCAACTAAAATATAAAGGCACTGTTCCTGATCAGTTAGAGGCATCTTCTTCTGGAACATCATATTGTCTGGATGCTGGCACCATTCAGCAGACTTTTCCTCTCCCTACATGTTTGGATAACGATGTCCAATCACATCCACGAAACAATATTCCTTTCAGTAATAGCATTGATGGATTAGCACCAGATACCTTATTGTCGAGGGGATACGACTCTCAAAAAGATCTTCAGAACTTACTTTCTAACTATGGTGGGGGAGTGCCGAGAGATATTGAGACAGAGTTGTCCACTGCTGCAATCAGCTCCCAGTCATTTGGGGTTCCAAACTTGCCTTTCAAGCCTGGCTGCTCAAATGATGTCAACGTAAATGAAGCTGGAGCCTTGAGTAGTGGATTGTGGGCAAACCACAGTCAACGTATGCGGACATACACAAAGGTTCAAAAGCGTGGATCAGTGGGTAGATGTATCGATGTTACTCGTTACAAAGGATATGATGAGCTTAGACATGATCTTGCCCGCATGTTTGGCATTGAAGGGCAGTTAGAAGATCCACAACGAACTGATTGGAAACTTGTTTATGTGGATCATGAAAATGATATACTTCTAGTTGGTGACGATCCTTGGGATGAGTTCGTGAGCTGTGTTCAGAGCATAAAGATCCTGTCATCCGCTGAAGTACAACAGATGAGTTTGGATGGAGATTTGGGTCACATTCAGGCTCCCAATCAAGCTTGCAGTGGGACGGATAGTGGAAATGCATGGAGAGGACAGTATGATGACAACTCGGCCGCATCATTCAATCGATGA 3321 44.69 NNFLFGLRTGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLICMLHNVTLHADPETDEVYAQMTLQPVTKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQELVARDLHDNSWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALSSSVISSDSMHIGILASAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDMDSLRWKNSQWRNLQVGWDESAAGERPNRVSIWEVEPVVTPFYICPPPFFRPKFPKQPGMPDDESDIENAFKRAMPWFGDDFGLKDTPSSIFPGLSLVQWMSMQHTNQFPAAQSGILPSMVAPSALHGTLTNDDPSKLLSFQAPVLSSPNLQFSKANQQNQVGQLPPTTWSQQQQLQQLLQVPASQQLQHQQQLPPQQELQQQQLQSQQLPQQQQLHSQQLPQQPQRQQQTSPSALLNNGVSAANHLPNQSLQQPLVYSQLQQRQLLAGNIQSHQTSQPSNKNSFQTTSLSQETQFQPQIEQQPSLLPRQQQQQQTQFQQAPLQLLQQSLSQRPQQQPQVPQFSQPIPSEQLQLQLLQKLQQQQQHQQQQPLLSPATSLLPPQLLQQQHVHQQNQQLPPLPLSNQQQFNANGGSFPTEKLNSNGFSSLGLMQSQQVPITQSHNQFKPTIRAYSGLTDGDAPSCSTSPSTNNCQVSVSNLLNKNQQVAATLGGDSVVEPATNLAQELQSKPDLRIKPEFPNSKGSDQLKYKGTVPDQLEASSSGTSYCLDAGTIQQTFPLPTCLDNDVQSHPRNNIPFSNSIDGLAPDTLLSRGYDSQKDLQNLLSNYGGGVPRDIETELSTAAISSQSFGVPNLPFKPGCSNDVNVNEAGALSSGLWANHSQRMRTYTKVQKRGSVGRCIDVTRYKGYDELRHDLARMFGIEGQLEDPQRTDWKLVYVDHENDILLVGDDPWDEFVSCVQSIKILSSAEVQQMSLDGDLGHIQAPNQACSGTDSGNAWRGQYDDNSAASFNR 1106
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 34534366 34547691 - MC08g2595 Mch8g3259 696880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g3259 1106 MobiDBLite consensus disorder prediction 586 632 - -
Mch8g3259 1106 MobiDBLite consensus disorder prediction 700 739 - -
Mch8g3259 1106 Pfam B3 DNA binding domain 121 222 IPR003340 GO:0003677(InterPro)
Mch8g3259 1106 ProSiteProfiles PB1 domain profile. 979 1072 IPR053793 -
Mch8g3259 1106 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 14 624 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Mch8g3259 1106 ProSiteProfiles B3 DNA-binding domain profile. 121 223 IPR003340 GO:0003677(InterPro)
Mch8g3259 1106 Gene3D - 284 355 - -
Mch8g3259 1106 Pfam AUX/IAA family 1025 1066 IPR033389 -
Mch8g3259 1106 SMART B3_2 121 223 IPR003340 GO:0003677(InterPro)
Mch8g3259 1106 MobiDBLite consensus disorder prediction 1084 1106 - -
Mch8g3259 1106 MobiDBLite consensus disorder prediction 820 843 - -
Mch8g3259 1106 FunFam Auxin response factor 119 223 - -
Mch8g3259 1106 Gene3D - 974 1068 - -
Mch8g3259 1106 Pfam Auxin response factor 247 329 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Mch8g3259 1106 MobiDBLite consensus disorder prediction 501 547 - -
Mch8g3259 1106 Gene3D - 119 222 IPR015300 -
Mch8g3259 1106 FunFam Auxin response factor 974 1068 - -
Mch8g3259 1106 CDD B3_DNA 120 221 IPR003340 GO:0003677(InterPro)
Mch8g3259 1106 SUPERFAMILY CAD & PB1 domains 992 1057 - -
Mch8g3259 1106 FunFam Auxin response factor 284 356 - -
Mch8g3259 1106 SUPERFAMILY DNA-binding pseudobarrel domain 111 250 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0134 Mch-Chr11:866468 Mch8g3259 Mch-Chr8:34534366 1.75E-193 dispersed
Mch1g0809 Mch-Chr1:11657507 Mch8g3259 Mch-Chr8:34534366 1.77E-79 dispersed
Mch8g0190 Mch-Chr8:1253533 Mch8g3259 Mch-Chr8:34534366 2.44E-62 dispersed
Mch8g2596 Mch-Chr8:29101355 Mch8g3259 Mch-Chr8:34534366 5.21E-286 dispersed
Mch8g3259 Mch-Chr8:34534366 Mch9g0915 Mch-Chr9:7274840 1.50E-07 dispersed
Mch8g3259 Mch-Chr8:34534366 Mch1g2064 Mch-Chr1:20009579 5.15E-197 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43975 PF02309 AUX_IAA 4.80E-09 CL0072 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g3259 K14486 - csv:101210917 1697.56