Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g0055 TTCATTCTCACACACTTGATTTTCATTTTCATCACAACAACTTCTCAGCCAGACTTTTTTCTAAGCAAATGTTCAGACAAATCAGATGACAGCAACAACAGCAGCAGCCGTTTCCATCAAAATCTCCGCAACGCACTGGCCTCCATCTCGTCCAAATCCAGCACCCAGATAACCAACTACGGCTTCTACAACGCCTCCTTTGGCAACGACCCCGACCCAGCCAACGCCAAGGCACTGTGTCGCGGTGGTGCGCCGTTGGAACTATGCCAAACTTGCGTCAACAACTCGGCCCACAGGATTCTACAAGACTGCCCTTCCCAGAAGGAGGGCACGGGATGGTATGACGATTGCCAGATTGTTTACTCCAACAACTCCCTGCACGGCGACGTGTCGGTGGCCGGGTTGACAACTCAGATTTATTACAATCTCGAAACGGCCCCCGACGTGGATGGCTTTAACGCGGCGCTGACGGAGTTGCTGATTGGGCTGCGGGAGAGGGCGGCGGCAGGGAATTCTACTAGGAAGTCTGCCGGCGGAGATGTGAAGCTTCCAAGTCCAAATTTTTATACCATATATGGGCTGGTTGATTGTTTTCCCGACATGTCGTTGGTTGATTGTGATGTGTGCCTCAGTGGCCTTATGAGTTCTCTTCCTAACGGCAGCATTGGGGCGAAATCAGTTGTTACGAGTTGTCAAATCGGTTATGAGATCCACCCTATCTATGACTCACTTCTCTCTCCTCCACCGCCACCGACGCCGACGCGGCCACCGCCTCTGCCGGATGTTCTCTCACCATCTTCGCCTCCGATCAAAGGAGATAATAATAAAGCAACTAGAAATGTTGTAATTATTGTTGTTGCTTGGACGCTTTCTGTTTCCATAATTATCATCTTCATCGTTCTTATCATTTTGAGAAAGAGGAGGAAGCTGAAGCAAAAGACTGAACGAACATTGAACAGAGGTGAAGCCACAGATGAAATCAGCAGCATTGAGATGCTGCAATTTAATTTCGAGACTATAAAGTTAGGAACAAATGAATTCTCCAATGAGAACAAACTTGGACAAGGTGGATTTGGAGTTGTTTACAAGGGTAAGCTGCCAAATGGACAGCATATAGCAGTGAAGAGGCAACTTGAAAACAATTCACAAGAAGGAAATGTTGAGTTCAAAAATGAAGTTCTTTTAATGGCCAAACTTCAACATAGAAACTTGGTTAGGCTACTTGGATTTTGCTTGCACAAAAATGAGAGACTTCTCATATACGAGTTTGTACCAAATGGCAGCCTTGACCACTTCATATTTGATTTTGGGAAGAAGATTCTTTTAGATTGGGGAAAACGATACAAGATTATAATTGGTATTGCACGCGGACTTCTTTACCTTCATGAAGATTCTCATCTTCGAATCATTCATCGTGATCTCAAAGCCAGCAATATTTTGTTGGACGAAGAATTGAATCCGAAAATTGCGGATTTTGGCACAGCAAGGTTGTTTGAAGTAGATGAGACTCAAAGGAATACAAATAGAGTTGTGGGAACCTATGGCTACATGGCACCGGAATATATAATTCAAGGACAATTTTCAGTAAAATCAGATGTCTTTAGTTTCGGTGTTCTTGTTCTTGAAATTTTGAGTGGCCGAAAAAATACTCGTTTTCGCACCGAAGATTCAAATGAGGAAGATCTTTTAAGCTTTGCATGGAAAAATTGGAGCGCGGGAACAATAACAAATGTGATAGATTCAACCTTAACTGCTGGTTCTCGAATTGAAATGATAAGATGTATTCATATTGGACTACTATGCGTTCAAGAGAATACAACGGAACGACCAACAATAGCTTCAGTAATTTTGATGCTTAGTAGCTTCTCTTTCACTCTCCTTCGACCTTCCAAACCTGCATTTTTAATGTACAGTAATGTTGATGGGTCCAATGTACTTTCAAACCGTAGCAGATTAGTAACGAACCAGTCTGATCATTCCGAATGCATACCTCTCCAAATTTCTAGGAATGAAACTTCAATTAGTGAGATTTATCCTCGT 2040 43.19 FILTHLIFIFITTTSQPDFFLSKCSDKSDDSNNSSSRFHQNLRNALASISSKSSTQITNYGFYNASFGNDPDPANAKALCRGGAPLELCQTCVNNSAHRILQDCPSQKEGTGWYDDCQIVYSNNSLHGDVSVAGLTTQIYYNLETAPDVDGFNAALTELLIGLRERAAAGNSTRKSAGGDVKLPSPNFYTIYGLVDCFPDMSLVDCDVCLSGLMSSLPNGSIGAKSVVTSCQIGYEIHPIYDSLLSPPPPPTPTRPPPLPDVLSPSSPPIKGDNNKATRNVVIIVVAWTLSVSIIIIFIVLIILRKRRKLKQKTERTLNRGEATDEISSIEMLQFNFETIKLGTNEFSNENKLGQGGFGVVYKGKLPNGQHIAVKRQLENNSQEGNVEFKNEVLLMAKLQHRNLVRLLGFCLHKNERLLIYEFVPNGSLDHFIFDFGKKILLDWGKRYKIIIGIARGLLYLHEDSHLRIIHRDLKASNILLDEELNPKIADFGTARLFEVDETQRNTNRVVGTYGYMAPEYIIQGQFSVKSDVFSFGVLVLEILSGRKNTRFRTEDSNEEDLLSFAWKNWSAGTITNVIDSTLTAGSRIEMIRCIHIGLLCVQENTTERPTIASVILMLSSFSFTLLRPSKPAFLMYSNVDGSNVLSNRSRLVTNQSDHSECIPLQISRNETSISEIYPR 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 443241 446116 + MC09g0048 Mch9g0055 696937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g0055 680 MobiDBLite consensus disorder prediction 244 265 - -
Mch9g0055 680 FunFam Cysteine-rich receptor-like protein kinase 10 307 423 - -
Mch9g0055 680 Gene3D Phosphorylase Kinase; domain 1 307 423 - -
Mch9g0055 680 FunFam Cysteine-rich receptor-like protein kinase 28 424 627 - -
Mch9g0055 680 Gene3D - 135 239 IPR038408 -
Mch9g0055 680 Gene3D - 18 125 IPR038408 -
Mch9g0055 680 SMART serkin_6 347 623 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch9g0055 680 Pfam Protein tyrosine and serine/threonine kinase 350 615 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch9g0055 680 Gene3D Transferase(Phosphotransferase) domain 1 424 626 - -
Mch9g0055 680 ProSiteProfiles Gnk2-homologous domain profile. 134 240 IPR002902 -
Mch9g0055 680 MobiDBLite consensus disorder prediction 244 271 - -
Mch9g0055 680 CDD STKc_IRAK 353 619 - -
Mch9g0055 680 ProSitePatterns Protein kinases ATP-binding region signature. 353 375 IPR017441 GO:0005524(InterPro)
Mch9g0055 680 ProSiteProfiles Gnk2-homologous domain profile. 18 126 IPR002902 -
Mch9g0055 680 ProSitePatterns Serine/Threonine protein kinases active-site signature. 469 481 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch9g0055 680 ProSiteProfiles Protein kinase domain profile. 347 623 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch9g0055 680 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 139 634 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Mch9g0055 680 SUPERFAMILY Protein kinase-like (PK-like) 335 643 IPR011009 -
Mch9g0055 680 Pfam Salt stress response/antifungal 23 123 IPR002902 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1787 Mch-Chr1:18179149 Mch9g0055 Mch-Chr9:443241 1.35E-81 dispersed
Mch1g1788 Mch-Chr1:18182049 Mch9g0055 Mch-Chr9:443241 8.14E-289 dispersed
Mch1g1790 Mch-Chr1:18191327 Mch9g0055 Mch-Chr9:443241 1.30E-72 dispersed
Mch1g1791 Mch-Chr1:18193841 Mch9g0055 Mch-Chr9:443241 1.62E-108 dispersed
Mch3g1207 Mch-Chr3:15244862 Mch9g0055 Mch-Chr9:443241 2.23E-164 dispersed
Mch3g1209 Mch-Chr3:15295385 Mch9g0055 Mch-Chr9:443241 9.37E-97 dispersed
Mch4g0203 Mch-Chr4:1342039 Mch9g0055 Mch-Chr9:443241 1.07E-113 dispersed
Mch9g0055 Mch-Chr9:443241 Mch9g0396 Mch-Chr9:2973891 8.90E-106 dispersed
Mch9g0055 Mch-Chr9:443241 Mch1g1786 Mch-Chr1:18173341 1.43E-231 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77657 PF07714 PK_Tyr_Ser-Thr 1.80E-48 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g0055 - - - 0.0