Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g0146 ATGCCGTCCGTGTATGGAGCTCGGTTGACCACCTTCGAAGATTCTGAGAAGGAAAGCGAGTATGGATACGTTCGGAAGGTATCTGGACCAGTTGTTGTGGCAGATGGCATGGGAGGTGCAGCTATGTATGAATTGGTTCGTGTTGGTCATGATAATCTAATTGGTGAAATCATTAGATTAGAAGGAGATTCTGCCACAATTCAAGTTTACGAGGAAACTGCTGGTTTGATGGTGAATGACCCTGTTTTACGGACTCATAAACCTCTATCTGTGGAGTTGGGACCTGGAATTCTGGGAAATATATTTGATGGCATTCAGAGGCCATTGAAAACTATTGCAAAGAGATCTGGAGATGTCTACATTCCTCGTGGTGTTGCAGTCCCTGCACTTGACAAAGACATACTATGGGATTTTCAACCAAAAAAACTAGGTGAGGGCGACCTAGTGACAGGAGGAGACTTGTATGCTACTGTCTTTGAGAATAGTCTAATGGAGCACCATATCGCTCTTCCTCCTGATGCTATGGGGAAAATTACCTATGTCGCACCACCTGGTCAATATTCATTGAAGGATACTGTTCTCGAGCTTGAGTTTCAAGGAGTTAAAAAGCAATTTACCATGCTTCAGACTTGGCCTGTGCGTACTCCTAGACCAGTTGCATCTAAGCTTGCAGCTGATACCCCTCTTTTGACTGGGCAGCGTGTTCTTGATGCCCTCTTCCCTTCAGTTCTTGGTGGGACATGTGCTATTCCAGGAGCATTTGGTTGTGGAAAAACAGTCATTAGTCAAGCTCTCTCTAAATACTCAAACTCTGATACTGTGGTGTATGTTGGTTGCGGAGAGAGAGGAAATGAAATGGCTGAAGTTCTAATGGATTTTCCTCAATTGACGATGACATTACCTGATGGCCGTGAAGAATCTGTCATGAAGCGTACCACTCTTGTGGCTAACACTTCTAATATGCCTGTGGCTGCTCGTGAAGCTTCAATTTATACTGGAATTACTTTGGCTGAATACTTTAGAGATATGGGATACAATGTAAGCATGATGGCTGATTCTACATCTCGATGGGCAGAAGCACTGCGTGAAATATCTGGACGACTGGCAGAAATGCCTGCAGATAGTGGATATCCTGCATACCTGGCAGCACGTTTAGCCTCTTTCTACGAGCGTGCTGGTAAAGTGAAATGTCTTGGTGGGCCAGAAAGAACTGGTAGTGTTACAATTGTTGGTGCAGTTTCTCCGCCAGGAGGAGATTTCTCTGATCCGGTGACATCTGCTACCCTCAGTATCGTCCAGGTTTTCTGGGGTCTAGATAAGAAGCTTGCCCAGAGGAAGCACTTCCCTTCTGTAAACTGGCTAATTTCATACTCAAAATACTCTTCGGCATTGGAATCTTTCTACGAGAAGTTTGATCCAGATTTTATTAGCATCAGGACAAAGGCTCGTGAAGTTCTTCAGAGGGAAGATGACCTAAATGAAATAGTCCAACTTGTAGGGAAGGATGCCTTGGCTGAAGGAGATAAGATTACCTTGGAGACTGCAAAGCTTTTGAGGGAAGACTATCTTGCTCAAAATGCATTTACTCCTTATGATAAATTCTGCCCGTTCTACAAGTCAGTGTGGATGATGCGCAACATCATCCATTTCTATAATTTGGCTAATCAGGCCGTTGAGAGGGGAGCGGGTATGGATGGACAGAAGATAACATACAGTTTGATTAAGCATCGATTGGGAGATCTGTTCTATCGCTTGGTGTCCCAAAAGTTCGAGGATCCAGCTGAAGGAGAAGCAGCTCTTATTGAGAAATTTAAGAAGCTACATGAAGATCTGACAAATGGTTTCCGTGCTCTCGAGGATGAAAATCGGTAG 1872 44.18 MPSVYGARLTTFEDSEKESEYGYVRKVSGPVVVADGMGGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAKRSGDVYIPRGVAVPALDKDILWDFQPKKLGEGDLVTGGDLYATVFENSLMEHHIALPPDAMGKITYVAPPGQYSLKDTVLELEFQGVKKQFTMLQTWPVRTPRPVASKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITLAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSSALESFYEKFDPDFISIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVERGAGMDGQKITYSLIKHRLGDLFYRLVSQKFEDPAEGEAALIEKFKKLHEDLTNGFRALEDENR 623
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 1140564 1147795 + MC09g0123 Mch9g0146 697028

Annotation


Select Seq ID Length Analysis Description Start End IPR GO
Mch9g0146 623 FunFam V-type proton ATPase catalytic subunit A 459 612 - -
Mch9g0146 623 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 471 553 - -
Mch9g0146 623 Coils Coil 601 621 - -
Mch9g0146 623 Hamap V-type ATP synthase alpha chain [atpA]. 19 622 IPR022878 GO:0046034(InterPro)|GO:0046961(InterPro)
Mch9g0146 623 Gene3D - 91 457 IPR027417 -
Mch9g0146 623 FunFam V-type proton ATPase catalytic subunit A 20 89 - -
Mch9g0146 623 Pfam ATP synthase alpha/beta family, beta-barrel domain 25 85 IPR004100 GO:0046034(InterPro)|GO:1902600(InterPro)
Mch9g0146 623 FunFam V-type proton ATPase catalytic subunit A 134 205 - -
Mch9g0146 623 Gene3D - 20 89 IPR023366 -
Mch9g0146 623 FunFam V-type proton ATPase catalytic subunit A 194 457 - -
Mch9g0146 623 Gene3D - 459 611 IPR024034 -
Mch9g0146 623 Pfam ATPsynthase alpha/beta subunit N-term extension 102 223 IPR031686 -
Mch9g0146 623 NCBIfam V-type ATPase subunit A 20 611 IPR005725 GO:0016887(InterPro)|GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Mch9g0146 623 CDD ATP-synt_V_A-type_alpha_N 21 87 - -
Mch9g0146 623 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 17 89 IPR036121 GO:0046034(InterPro)|GO:1902600(InterPro)
Mch9g0146 623 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 232 458 IPR000194 GO:0005524(InterPro)
Mch9g0146 623 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 202 463 IPR027417 -
Mch9g0146 623 PANTHER V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A 10 620 IPR022878 GO:0000325(PANTHER)|GO:0046034(InterPro)|GO:0046961(InterPro)|GO:0046961(PANTHER)|GO:1902600(PANTHER)
Mch9g0146 623 CDD V_A-ATPase_A 88 460 - -
Mch9g0146 623 CDD ATP-synt_V_A-type_alpha_C 475 581 - -
Mch9g0146 623 Gene3D - 134 205 - -
Mch9g0146 623 ProSitePatterns ATP synthase alpha and beta subunits signature. 449 458 IPR020003 GO:0005524(InterPro)
Mch9g0146 623 Pfam C-terminal domain of V and A type ATP synthase 466 561 - -
       

Pathway


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g0146 K02145 - - csv:101216234 1216.06
       

Syn-Families


Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch8g0622 . 6 961 Primary Pumps ATPases(2) AT1G10130 84.2 0.0e+00 1563.1
Mch2g0972 . 1 814 Primary Pumps ATPases(2) AT2G28520 80.8 0.0e+00 1332.0
Mch8g0816 . 2 804 Primary Pumps ATPases(2) AT2G28520 62.3 1.6e-296 1015.4
Mch4g0569 . 10 813 Primary Pumps ATPases(2) AT2G28520 62.5 1.5e-291 998.8
Mch4g0569 . 6 819 Primary Pumps ATPases(2) AT2G21410 76.2 0.0e+00 1234.9
Mch8g0816 . 1 810 Primary Pumps ATPases(2) AT2G21410 73.6 0.0e+00 1212.2
Mch2g0972 . 9 820 Primary Pumps ATPases(2) AT2G21410 62.2 1.6e-296 1015.4
Mch4g0569 . 1 819 Primary Pumps ATPases(2) AT4G39080 77.0 0.0e+00 1237.6
Mch8g0816 . 1 810 Primary Pumps ATPases(2) AT4G39080 74.4 0.0e+00 1202.6
Mch2g0972 . 9 818 Primary Pumps ATPases(2) AT4G39080 63.7 4.7e-296 1013.8
Mch11g0830 . 28 166 Primary Pumps ATPases(2) AT4G34720 99.3 9.9e-61 229.6
Mch8g0829 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.3e-60 229.2
Mch8g0830 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.3e-60 229.2
Mch8g0830 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.3e-66 249.6
Mch11g0830 . 3 166 Primary Pumps ATPases(2) AT1G75630 80.8 1.7e-66 249.2
Mch8g0829 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.3 2.9e-66 248.4
Mch8g0830 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.1e-74 274.2
Mch11g0830 . 2 166 Primary Pumps ATPases(2) AT2G16510 98.2 6.9e-74 273.5
Mch8g0829 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 2.0e-73 271.9
Mch8g0830 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.1e-52 202.6
Mch8g0829 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 2.5e-52 201.4
Mch11g0830 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 4.3e-52 200.7
Mch8g0419 . 1 180 Primary Pumps ATPases(2) AT2G25610 83.3 3.1e-72 268.5
Mch11g0579 . 1 180 Primary Pumps ATPases(2) AT2G25610 80.6 3.2e-69 258.5
Mch11g0830 . 28 166 Primary Pumps ATPases(2) AT4G38920 99.3 2.8e-60 228.0
Mch8g0829 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.7e-60 227.6
Mch8g0830 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.7e-60 227.6
Mch8g0419 . 1 180 Primary Pumps ATPases(2) AT4G32530 76.7 1.7e-77 285.8
Mch11g0579 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.3 5.7e-73 270.8
Mch3g0360 . 1 1066 Primary Pumps ATPases(2) AT1G07810 80.6 0.0e+00 1673.7
Mch3g0360 . 1 1066 Primary Pumps ATPases(2) AT1G07670 80.5 0.0e+00 1674.1
Mch8g0622 . 6 961 Primary Pumps ATPases(2) AT1G10130 84.2 0.0e+00 1563.1
Mch3g0360 . 22 1046 Primary Pumps ATPases(2) AT4G00900 66.0 0.0e+00 1326.2
Mch3g0098 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.1 2.1e-57 218.4
Mch4g0469 . 6 490 Primary Pumps ATPases(2) AT1G76030 96.1 4.2e-268 920.2
Mch4g1641 . 1 377 Primary Pumps ATPases(2) AT1G12840 82.5 1.1e-178 622.9
Mch4g0074 . 1 262 Primary Pumps ATPases(2) AT3G58730 80.5 5.2e-116 414.1
Mch1g0992 . 3 455 Primary Pumps ATPases(2) AT3G42050 80.4 4.4e-208 720.7
Mch8g0830 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.1e-74 274.2
Mch11g0830 . 2 166 Primary Pumps ATPases(2) AT2G16510 98.2 6.9e-74 273.5
Mch8g0829 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 2.0e-73 271.9
Mch4g0469 . 1 490 Primary Pumps ATPases(2) AT4G38510 95.9 1.7e-269 924.9
Mch8g1369 . 1 184 Primary Pumps ATPases(2) AT1G64200 74.9 6.6e-68 253.8
Mch4g0469 . 9 490 Primary Pumps ATPases(2) AT1G20260 95.6 4.6e-267 916.8
Mch2g0972 . 1 814 Primary Pumps ATPases(2) AT2G28520 80.8 0.0e+00 1332.0
Mch8g0816 . 2 804 Primary Pumps ATPases(2) AT2G28520 62.3 1.6e-296 1015.4
Mch4g0569 . 10 813 Primary Pumps ATPases(2) AT2G28520 62.5 1.5e-291 998.8
Mch8g1538 . 1 352 Primary Pumps ATPases(2) AT3G28715 91.8 5.9e-192 666.8
Mch8g1369 . 1 230 Primary Pumps ATPases(2) AT4G11150 79.2 1.4e-93 339.3
Mch9g0146 . 1 624 Primary Pumps ATPases(2) AT1G78900 93.1 0.0e+00 1173.3
Mch4g0469 . 6 490 Primary Pumps ATPases(2) AT1G76030 96.1 4.2e-268 920.2
Mch4g0469 . 1 490 Primary Pumps ATPases(2) AT4G38510 95.9 1.7e-269 924.9
Mch4g0469 . 9 490 Primary Pumps ATPases(2) AT1G20260 95.6 4.6e-267 916.8
Mch4g1641 . 1 377 Primary Pumps ATPases(2) AT1G12840 82.5 1.1e-178 622.9
Mch4g0074 . 1 262 Primary Pumps ATPases(2) AT3G58730 80.5 5.2e-116 414.1
Mch8g1369 . 1 230 Primary Pumps ATPases(2) AT4G11150 79.2 1.4e-93 339.3
Mch8g1369 . 1 223 Primary Pumps ATPases(2) AT3G08560 68.6 1.8e-75 279.3
Mch8g1369 . 1 184 Primary Pumps ATPases(2) AT1G64200 74.9 6.6e-68 253.8
Mch3g0098 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.1 2.1e-57 218.4
Mch1g0992 . 3 455 Primary Pumps ATPases(2) AT3G42050 80.4 4.4e-208 720.7
Mch2g0972 . 1 814 Primary Pumps ATPases(2) AT2G28520 80.8 0.0e+00 1332.0
Mch8g0816 . 2 804 Primary Pumps ATPases(2) AT2G28520 62.3 1.6e-296 1015.4
Mch4g0569 . 10 813 Primary Pumps ATPases(2) AT2G28520 62.5 1.5e-291 998.8
Mch4g0569 . 6 819 Primary Pumps ATPases(2) AT2G21410 76.2 0.0e+00 1234.9
Mch8g0816 . 1 810 Primary Pumps ATPases(2) AT2G21410 73.6 0.0e+00 1212.2
Mch2g0972 . 9 820 Primary Pumps ATPases(2) AT2G21410 62.2 1.6e-296 1015.4
Mch4g0569 . 1 819 Primary Pumps ATPases(2) AT4G39080 77.0 0.0e+00 1237.6
Mch8g0816 . 1 810 Primary Pumps ATPases(2) AT4G39080 74.4 0.0e+00 1202.6
Mch2g0972 . 9 818 Primary Pumps ATPases(2) AT4G39080 63.7 4.7e-296 1013.8
Mch11g0830 . 28 166 Primary Pumps ATPases(2) AT4G34720 99.3 9.9e-61 229.6
Mch8g0829 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.3e-60 229.2
Mch8g0830 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.3e-60 229.2
Mch8g0830 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.1e-52 202.6
Mch8g0829 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 2.5e-52 201.4
Mch11g0830 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 4.3e-52 200.7
Mch11g0830 . 28 166 Primary Pumps ATPases(2) AT4G38920 99.3 2.8e-60 228.0
Mch8g0829 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.7e-60 227.6
Mch8g0830 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.7e-60 227.6
Mch8g0830 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.3e-66 249.6
Mch11g0830 . 3 166 Primary Pumps ATPases(2) AT1G75630 80.8 1.7e-66 249.2
Mch8g0829 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.3 2.9e-66 248.4
Mch8g0830 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.1e-74 274.2
Mch11g0830 . 2 166 Primary Pumps ATPases(2) AT2G16510 98.2 6.9e-74 273.5
Mch8g0829 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 2.0e-73 271.9
Mch8g0419 . 1 180 Primary Pumps ATPases(2) AT4G32530 76.7 1.7e-77 285.8
Mch11g0579 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.3 5.7e-73 270.8
Mch8g0419 . 1 180 Primary Pumps ATPases(2) AT2G25610 83.3 3.1e-72 268.5
Mch11g0579 . 1 180 Primary Pumps ATPases(2) AT2G25610 80.6 3.2e-69 258.5
Mch8g1538 . 1 352 Primary Pumps ATPases(2) AT3G28710 94.0 5.1e-199 690.3
Mch8g1538 . 1 352 Primary Pumps ATPases(2) AT3G28715 91.8 5.9e-192 666.8
Mch3g0360 . 1 1066 Primary Pumps ATPases(2) AT1G07810 80.6 0.0e+00 1673.7
Mch3g0360 . 22 1046 Primary Pumps ATPases(2) AT4G00900 66.0 0.0e+00 1326.2
Mch8g0622 . 6 961 Primary Pumps ATPases(2) AT1G10130 84.2 0.0e+00 1563.1
Mch3g0360 . 1 1066 Primary Pumps ATPases(2) AT1G07670 80.5 0.0e+00 1674.1
       

Syn-Orthogroups


Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006487 2 1 2 1 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 0 1 1 1 1 1 1 1 2 37