Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g0149 ATGGACGGGATTCATGCGAGCGATGGACGGATGCATATGGGCCATGCACAGCATTCGATACAATCTGTGCAAGACCCGGAACATCATGACTTGCACTATATGAGCAATGGGAATGGAATGTCCGATGAGCATGAAAATGAAGGTCATGGTATCATGGTTGTGGAAAGGGAAGCTCCATCCGACCATGGTGATCTTGCTGAGAATCGTGGTGTAATGGTGGATCGAGGAGGCGATAACTGTGATCAGCTGACCCTGTCATATCAGGGTCAAGTTTACGTCTTCGATTCTGTCTCGCCTGAAAAGGTTCAAGCCGTGTTATTATTATTGGGAGGTCGTGAAGTACCTTTGCGTGTTCCTTCAATCCCAATAAGTAATCAACAAAATGATAGGCACCTCACTGATGAAGCATTTAACCAGGCACTTGCCAGTATCCCCCCACGTCTAAGTGTCCCTCAGAGATTAGCTTCTTTGATTAGATTTCGTGAAAAGCGAAAGGAACGTAATTTTGACAAGAAAATTCGGTATACAGTTCGTAAAGAGGTAGCACTTAGGATGCAGCGTAATAAAGGTCAATTTACATCTTCTAAACCCATTCATGAAGATTCATCATCAGCCATAACAAGTTGGGAATCAAATGAGAGCTGGAGCACTGATGGCAACGGATCCCAACAACAAGAAATTCTCTGCCGACACTGTGGTACAAGTGAGAAATCTACACCAATGATGCGACGTGGACCTGATGGGCCAAGAACCCTTTGCAACGCTTGTGGACTCATGTGGGCAAACAAGGGAACTCTGCGGGACCTCTCAAAAGCACCAAACCAGGGTGGACAAGCTTCAACCTTAAACAGAAACGAGAATGTTTTGCAGAATGGAGATTCTGAGTCCGATCCAAAAAGTGCTTAG 906 45.36 MDGIHASDGRMHMGHAQHSIQSVQDPEHHDLHYMSNGNGMSDEHENEGHGIMVVEREAPSDHGDLAENRGVMVDRGGDNCDQLTLSYQGQVYVFDSVSPEKVQAVLLLLGGREVPLRVPSIPISNQQNDRHLTDEAFNQALASIPPRLSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKPIHEDSSSAITSWESNESWSTDGNGSQQQEILCRHCGTSEKSTPMMRRGPDGPRTLCNACGLMWANKGTLRDLSKAPNQGGQASTLNRNENVLQNGDSESDPKSA 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1162517 1169599 - MC09g0126 Mch9g0149 697031

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g0149 301 ProSitePatterns GATA-type zinc finger domain. 229 256 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch9g0149 301 ProSiteProfiles GATA-type zinc finger domain profile. 223 284 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch9g0149 301 SMART GATA_3 223 276 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch9g0149 301 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 224 279 - -
Mch9g0149 301 CDD ZnF_GATA 229 271 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch9g0149 301 Gene3D - 219 287 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Mch9g0149 301 ProSiteProfiles Tify domain profile. 76 111 IPR010399 -
Mch9g0149 301 ProSiteProfiles CCT domain profile. 153 195 IPR010402 GO:0005515(InterPro)
Mch9g0149 301 MobiDBLite consensus disorder prediction 268 301 - -
Mch9g0149 301 SMART tify_2 76 111 IPR010399 -
Mch9g0149 301 Pfam tify domain 82 110 IPR010399 -
Mch9g0149 301 PANTHER GATA TRANSCRIPTION FACTOR 28 30 286 IPR045280 GO:0006355(InterPro)
Mch9g0149 301 Pfam CCT motif 153 195 IPR010402 GO:0005515(InterPro)
Mch9g0149 301 MobiDBLite consensus disorder prediction 188 222 - -
Mch9g0149 301 Pfam GATA zinc finger 229 265 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g0149 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g0263 Mch-Chr8:1793576 Mch9g0149 Mch-Chr9:1162517 2.70E-68 dispersed
Mch8g0264 Mch-Chr8:1804679 Mch9g0149 Mch-Chr9:1162517 2.22E-61 dispersed
Mch9g0149 Mch-Chr9:1162517 Mch3g1725 Mch-Chr3:18746928 1.78E-06 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch9g0149 . 1 228 Tify Gene Family AT3G21175 57.5 2.2e-59 225.7
Mch8g0264 . 48 298 Tify Gene Family AT4G24470 53.9 2.2e-68 256.1
Mch4g0873 . 88 266 Tify Gene Family AT4G24470 60.9 1.3e-49 193.7
Mch9g0149 . 71 271 Tify Gene Family AT4G24470 52.0 7.6e-45 177.9
Mch9g0149 . 1 286 Tify Gene Family AT1G51600 60.6 6.5e-86 314.3
Mch8g0263 . 69 250 Tify Gene Family AT1G51600 57.7 2.3e-51 199.5
Mch4g0873 . 90 268 Tify Gene Family AT1G51600 61.5 5.2e-51 198.4
Mch8g0264 . 35 252 Tify Gene Family AT1G51600 52.3 1.7e-49 193.4
Mch8g0264 . 48 298 Tify Gene Family AT4G24470 53.9 2.2e-68 256.1
Mch4g0873 . 88 266 Tify Gene Family AT4G24470 60.9 1.3e-49 193.7
Mch9g0149 . 71 271 Tify Gene Family AT4G24470 52.0 7.6e-45 177.9
Mch9g0149 . 1 286 Tify Gene Family AT1G51600 60.6 6.5e-86 314.3
Mch8g0263 . 69 250 Tify Gene Family AT1G51600 57.7 2.3e-51 199.5
Mch4g0873 . 90 268 Tify Gene Family AT1G51600 61.5 5.2e-51 198.4
Mch8g0264 . 35 252 Tify Gene Family AT1G51600 52.3 1.7e-49 193.4
Mch9g0149 . 1 228 Tify Gene Family AT3G21175 57.5 2.2e-59 225.7
Mch7g1033 . 1 180 Tify Gene Family AT4G14713 51.6 5.4e-45 177.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008711 0 4 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 2 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43981 PF06203 CCT 8.60E-15 CL0281 Mch TF