Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g0149 ATGGACGGGATTCATGCGAGCGATGGACGGATGCATATGGGCCATGCACAGCATTCGATACAATCTGTGCAAGACCCGGAACATCATGACTTGCACTATATGAGCAATGGGAATGGAATGTCCGATGAGCATGAAAATGAAGGTCATGGTATCATGGTTGTGGAAAGGGAAGCTCCATCCGACCATGGTGATCTTGCTGAGAATCGTGGTGTAATGGTGGATCGAGGAGGCGATAACTGTGATCAGCTGACCCTGTCATATCAGGGTCAAGTTTACGTCTTCGATTCTGTCTCGCCTGAAAAGGTTCAAGCCGTGTTATTATTATTGGGAGGTCGTGAAGTACCTTTGCGTGTTCCTTCAATCCCAATAAGTAATCAACAAAATGATAGGCACCTCACTGATGAAGCATTTAACCAGGCACTTGCCAGTATCCCCCCACGTCTAAGTGTCCCTCAGAGATTAGCTTCTTTGATTAGATTTCGTGAAAAGCGAAAGGAACGTAATTTTGACAAGAAAATTCGGTATACAGTTCGTAAAGAGGTAGCACTTAGGATGCAGCGTAATAAAGGTCAATTTACATCTTCTAAACCCATTCATGAAGATTCATCATCAGCCATAACAAGTTGGGAATCAAATGAGAGCTGGAGCACTGATGGCAACGGATCCCAACAACAAGAAATTCTCTGCCGACACTGTGGTACAAGTGAGAAATCTACACCAATGATGCGACGTGGACCTGATGGGCCAAGAACCCTTTGCAACGCTTGTGGACTCATGTGGGCAAACAAGGGAACTCTGCGGGACCTCTCAAAAGCACCAAACCAGGGTGGACAAGCTTCAACCTTAAACAGAAACGAGAATGTTTTGCAGAATGGAGATTCTGAGTCCGATCCAAAAAGTGCTTAG 906 45.36 MDGIHASDGRMHMGHAQHSIQSVQDPEHHDLHYMSNGNGMSDEHENEGHGIMVVEREAPSDHGDLAENRGVMVDRGGDNCDQLTLSYQGQVYVFDSVSPEKVQAVLLLLGGREVPLRVPSIPISNQQNDRHLTDEAFNQALASIPPRLSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKPIHEDSSSAITSWESNESWSTDGNGSQQQEILCRHCGTSEKSTPMMRRGPDGPRTLCNACGLMWANKGTLRDLSKAPNQGGQASTLNRNENVLQNGDSESDPKSA 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1162517 1169599 - MC09g0126 Mch9g0149 697031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g0149 301 ProSitePatterns GATA-type zinc finger domain. 229 256 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch9g0149 301 ProSiteProfiles GATA-type zinc finger domain profile. 223 284 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch9g0149 301 SMART GATA_3 223 276 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch9g0149 301 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 224 279 - -
Mch9g0149 301 CDD ZnF_GATA 229 271 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch9g0149 301 Gene3D - 219 287 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Mch9g0149 301 ProSiteProfiles Tify domain profile. 76 111 IPR010399 -
Mch9g0149 301 ProSiteProfiles CCT domain profile. 153 195 IPR010402 GO:0005515(InterPro)
Mch9g0149 301 MobiDBLite consensus disorder prediction 268 301 - -
Mch9g0149 301 SMART tify_2 76 111 IPR010399 -
Mch9g0149 301 Pfam tify domain 82 110 IPR010399 -
Mch9g0149 301 PANTHER GATA TRANSCRIPTION FACTOR 28 30 286 IPR045280 GO:0006355(InterPro)
Mch9g0149 301 Pfam CCT motif 153 195 IPR010402 GO:0005515(InterPro)
Mch9g0149 301 MobiDBLite consensus disorder prediction 188 222 - -
Mch9g0149 301 Pfam GATA zinc finger 229 265 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g0263 Mch-Chr8:1793576 Mch9g0149 Mch-Chr9:1162517 2.70E-68 dispersed
Mch8g0264 Mch-Chr8:1804679 Mch9g0149 Mch-Chr9:1162517 2.22E-61 dispersed
Mch9g0149 Mch-Chr9:1162517 Mch3g1725 Mch-Chr3:18746928 1.78E-06 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43981 PF06203 CCT 8.60E-15 CL0281 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g0149 - - - 0.0