Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g0166 ATGAATTGGAGGTGGACGGAGCTGGTATTTCTCATCATTCTTTGCATTCTGGGATTGAAGCCCAGCTTCATCAATGGAGCCACAGATCCAGCAGATGCCTCTGCTTTAAGAGTTTTGTACACCAGCTTAAACTCCCCGTCTCAGCTAACCCAGTGGAACGCAAATGGCGATGATCCATGTGGACAATCATGGAAGGGGGTTACTTGCTCTGGCTCACGGGTTACAGAAATAAACTTATCTGGCCTCGGGCTCAGTGGATCGCTCGGATACCAGCTCTCAAGTTTGACATCGTTAACCAATCTAGATGTGAGCAATAACAATATTGGGGGCGAGATAGTCTACCAACTTCCACCAAACCTGCATAGATTAAATCTTGCTCGTAACAACTTCAATAAAGGCATCCCTTATTCGGTCTCCTTGATGACTACACTTCAATACTTAAATATCAGTCACAATCAGCTTCAGGATCCACTGATTGATATGTTTGGGCAGCTTACTTCCCTCTCCACATTGGATCTGTCTTTCAATTCTCTGTCTGGCAACCTACCTCAGAGTTTTAGCTCCCTTTCTGGCATCAGCACCATGTATTTGCAAAATAACCAGTTCACTGGAACAATCGATGTCCTTGCAAATCTTCCTCTTGACAACCTGAATGTTGAGAATAACCATTTCACTGGCTGGATCCCCGAACTACTGAAGAACATCAATCTGCAGACAAATGGGAACTCCTTCAGCTCAGGTCCTGCACCTCCTCCTCCACCTGGTACGCCTCCAGCCACCAGAAGGAACCGAAATCGAAATTCTGGTAGCAATAGTCCATCAAATGGTGGTTCTGGTGAAGGCGAGAAATCAGGAATTAGTGGTGGTGGCATTGCAGGAATTATCATCTCTGTGCTTGTCGTTGGAGCTATAGTAGCATTCTTCCTTGTAAGGAGGAAATCAAAGAGATCATCTACAGACATTGAAAAGCTTGATAACCAACCCCTGCAACCTCTTAAAATGAACGCAGCACAAGAAACGAAGTCGGAAGAGACCTCCTCCACACTTTTTCCAACAACATTTGACACTTCTGCTGCAATTAATCTTAAGCCCCCACCTATTGATCGTCATAAATCATTTGATGAAGACGATTTCTCGAAACGAGCCGTTGTCAAGAAGGCTAGTGCAGCTCCTATCAATGTAAAGTCATATTCAATAGCAGACCTGCAAATGGCTACAGGCAGCTTCAATGTTGAAAATCTTCTTGGTGAAGGATCGTTTGGACGTGTTTATCGGGCTGAGTTTGATGACGGGAAGATTCTTGCCGTGAAAAAAATAAACTCGTCTGCACTACCTAGGGAATTATCTGAAGATTTCACTGAGATTGTTTCAAAAGTCTCCCAGTTACACCATCCCAATATAACTGAGCTTGTGGGCTATTGCTCAGAGCATGGGCAGCATTTGCTTGTGTATGAGTTCCAAAAAAATGGCTCGCTTTATGACTTCTTGCATCTATCAGATGAATACAACAAGCCATTGATATGGAATTCCCGTGTTAAGATTGCTCTGGGAACAGCACGTGCATTAGAGTATCTTCATGAAGTTTGCTCCCCATCACTTGTTCATAGAAACATCAAGTCTGCTAACATATTGCTGGATGCCGAACTCAGCCCCCACCTTTCTGATTCTGGACTGGAAAGCTTTGTGCCAAATGAAGATCAGGCACTGGATCACAATGCAAGGTCAGGATACACTGCCCCTGAGGTTACCATGTCTGGCCAGTATACTCTGAAAAGCGATGTTTACAGTTTCGGAGTAGTCATGTTGGAGCTGCTGACTGGACGCAAACCATTCGATAGTTCAAGGGCGAGGTCGGAGCAGTCTTTGGTTCGATGGGCGACACCCCAGCTTCATGACATCGATGCTTTGGCCAAAATGGTTGATCCAGAACTCAAAGGGCTGTATCCAGTTAAATCTCTCTCCCGATTTGCGGATGTGATTGCACTTTGCGTTCAGACCGAACCAGAATTCAGACCTCCAATGTCGGAGGTGGTGGAAGCATTGGTTCGTCTGGTGCAGCGAGCAAACATGAGTAAGAGAACATTTGGAAATGAGAATGTATCGTCTCCGAGAGCGGACAGCACAGGTGGGGAGGACACGCCA 2142 45.42 MNWRWTELVFLIILCILGLKPSFINGATDPADASALRVLYTSLNSPSQLTQWNANGDDPCGQSWKGVTCSGSRVTEINLSGLGLSGSLGYQLSSLTSLTNLDVSNNNIGGEIVYQLPPNLHRLNLARNNFNKGIPYSVSLMTTLQYLNISHNQLQDPLIDMFGQLTSLSTLDLSFNSLSGNLPQSFSSLSGISTMYLQNNQFTGTIDVLANLPLDNLNVENNHFTGWIPELLKNINLQTNGNSFSSGPAPPPPPGTPPATRRNRNRNSGSNSPSNGGSGEGEKSGISGGGIAGIIISVLVVGAIVAFFLVRRKSKRSSTDIEKLDNQPLQPLKMNAAQETKSEETSSTLFPTTFDTSAAINLKPPPIDRHKSFDEDDFSKRAVVKKASAAPINVKSYSIADLQMATGSFNVENLLGEGSFGRVYRAEFDDGKILAVKKINSSALPRELSEDFTEIVSKVSQLHHPNITELVGYCSEHGQHLLVYEFQKNGSLYDFLHLSDEYNKPLIWNSRVKIALGTARALEYLHEVCSPSLVHRNIKSANILLDAELSPHLSDSGLESFVPNEDQALDHNARSGYTAPEVTMSGQYTLKSDVYSFGVVMLELLTGRKPFDSSRARSEQSLVRWATPQLHDIDALAKMVDPELKGLYPVKSLSRFADVIALCVQTEPEFRPPMSEVVEALVRLVQRANMSKRTFGNENVSSPRADSTGGEDTP 714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1268020 1273763 + MC09g0140 Mch9g0166 697048

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g0166 714 MobiDBLite consensus disorder prediction 260 281 - -
Mch9g0166 714 MobiDBLite consensus disorder prediction 239 284 - -
Mch9g0166 714 Pfam Leucine Rich repeat 95 113 IPR001611 GO:0005515(InterPro)
Mch9g0166 714 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 29 255 - -
Mch9g0166 714 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 161 686 IPR046959 -
Mch9g0166 714 CDD STKc_IRAK 415 684 - -
Mch9g0166 714 Gene3D Phosphorylase Kinase; domain 1 372 486 - -
Mch9g0166 714 SUPERFAMILY L domain-like 29 234 - -
Mch9g0166 714 Gene3D Transferase(Phosphotransferase) domain 1 488 704 - -
Mch9g0166 714 ProSiteProfiles Protein kinase domain profile. 409 684 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch9g0166 714 Gene3D Ribonuclease Inhibitor 29 257 IPR032675 -
Mch9g0166 714 ProSitePatterns Protein kinases ATP-binding region signature. 415 438 IPR017441 GO:0005524(InterPro)
Mch9g0166 714 MobiDBLite consensus disorder prediction 694 714 - -
Mch9g0166 714 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 487 695 - -
Mch9g0166 714 SUPERFAMILY Protein kinase-like (PK-like) 391 681 IPR011009 -
Mch9g0166 714 Pfam Leucine rich repeat N-terminal domain 30 70 IPR013210 -
Mch9g0166 714 Pfam Leucine rich repeat 143 202 IPR001611 GO:0005515(InterPro)
Mch9g0166 714 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 374 486 - -
Mch9g0166 714 Pfam Protein tyrosine and serine/threonine kinase 411 681 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g0166 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g0804 Mch-Chr3:12118111 Mch9g0166 Mch-Chr9:1268020 2.30E-164 dispersed
Mch4g1111 Mch-Chr4:11072431 Mch9g0166 Mch-Chr9:1268020 2.63E-167 dispersed
Mch9g0166 Mch-Chr9:1268020 Mch11g0054 Mch-Chr11:338613 5.14E-78 dispersed
Mch8g1013 Mch-Chr8:7183135 Mch9g0166 Mch-Chr9:1268020 1.09E-274 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch4g0174 . 34 786 Strubbelig Receptor Gene Family AT4G03390 62.9 1.8e-209 726.1
Mch1g1840 . 29 750 Strubbelig Receptor Gene Family AT4G03390 53.6 2.3e-159 559.7
Mch5g1424 . 9 726 Strubbelig Receptor Gene Family AT5G06820 51.1 1.7e-172 603.2
Mch4g1111 . 23 689 Strubbelig Receptor Gene Family AT1G78980 58.4 5.9e-183 637.9
Mch9g0166 . 28 690 Strubbelig Receptor Gene Family AT1G78980 52.9 1.8e-131 466.8
Mch4g1111 . 2 666 Strubbelig Receptor Gene Family AT3G13065 52.6 8.0e-140 494.6
Mch9g0166 . 7 685 Strubbelig Receptor Gene Family AT3G13065 51.1 5.0e-110 395.6
Mch3g0804 . 361 654 Strubbelig Receptor Gene Family AT1G11130 53.1 5.6e-85 312.4
Mch9g0166 . 397 685 Strubbelig Receptor Gene Family AT1G11130 52.9 1.4e-83 307.8
Mch5g1424 . 9 726 Strubbelig Receptor Gene Family AT5G06820 51.1 1.7e-172 603.2
Mch4g0174 . 34 786 Strubbelig Receptor Gene Family AT4G03390 62.9 1.8e-209 726.1
Mch1g1840 . 29 750 Strubbelig Receptor Gene Family AT4G03390 53.6 2.3e-159 559.7
Mch4g1111 . 2 666 Strubbelig Receptor Gene Family AT3G13065 52.6 8.0e-140 494.6
Mch9g0166 . 7 685 Strubbelig Receptor Gene Family AT3G13065 51.1 5.0e-110 395.6
Mch4g1111 . 23 689 Strubbelig Receptor Gene Family AT1G78980 58.4 5.9e-183 637.9
Mch9g0166 . 28 690 Strubbelig Receptor Gene Family AT1G78980 52.9 1.8e-131 466.8
Mch8g1013 . 1 736 Strubbelig Receptor Gene Family AT1G53730 59.6 2.2e-209 725.7
Mch9g0166 . 1 696 Strubbelig Receptor Gene Family AT1G53730 64.4 1.6e-199 693.0
Mch3g0804 . 5 677 Strubbelig Receptor Gene Family AT1G53730 53.9 3.4e-149 525.8
Mch8g1013 . 11 734 Strubbelig Receptor Gene Family AT3G14350 51.5 3.4e-183 638.6
Mch9g0166 . 11 702 Strubbelig Receptor Gene Family AT3G14350 54.8 1.1e-173 607.1
Mch3g0804 . 208 685 Strubbelig Receptor Gene Family AT4G22130 69.7 3.3e-176 615.1
Mch8g1013 . 429 752 Strubbelig Receptor Gene Family AT4G22130 64.4 1.7e-119 426.8
Mch9g0166 . 391 704 Strubbelig Receptor Gene Family AT4G22130 64.9 1.3e-116 417.2
Mch4g0174 . 483 778 Strubbelig Receptor Gene Family AT4G22130 61.6 1.2e-106 384.0
Mch1g1840 . 461 750 Strubbelig Receptor Gene Family AT4G22130 60.1 7.3e-99 358.2
Mch4g1111 . 379 688 Strubbelig Receptor Gene Family AT4G22130 55.8 7.3e-99 358.2
Mch5g1424 . 375 695 Strubbelig Receptor Gene Family AT4G22130 51.7 9.6e-91 331.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001486 0 7 2 3 1 2 4 1 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 1 1 2 2 1 1 1 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77661 PF07714 PK_Tyr_Ser-Thr 5.40E-44 CL0016 Mch PK