Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g0172 ATGGAGAAACCCATCGTCGCCGGAATGGAAATCTCAGATTCCGGTCACCGGAGCACTCCCGTCCCCCGAAACAGAAACAGCAAGAAGACGCTGCTTCTGGCTCTGTCCGCAGCTCTCCTCGTGGTCGGCGCCGTCGTGGGCATTGTCGCCGGCGTGACGAAGTCGAGAAACTCCGGCCGCCAGTCGGAAGAAGCCCACGCCATTGTGAAGAGCACGTGCAGCGCCACGCTGTACCCGGAGCTGTGCTTCTCGACGATTTCCCGGAGCGAGGGAGCGATGAAGAAAGTTTCGAATCAGAAGGACGTGATTGAGCTGTCGATCAACATAACGGTGAAGGCGGTGGAGGAGAATTACTTCAGAGTGCAGAAATTGGCGGCGCTGAAGAACATAACCCACCGCGAGAGAATTGCGCTCCACGATTGCCTTGAGACCATCGACGAGACGCTGGATGAGCTCCACAAGTCCATCGTGGACCTCCATCAGTACCCCAATAAGAAGTCTCTCGACCAGCACGCCGACGACCTCAAGACCCTGCTCAGTTCCGCCATTACCAATCAGGAAACTTGCTTGGATGGATTCTCACACGACGACGCGGATAAAAGCCTGCGGAAGAAGCTGGAAGAGGGGCAGAAGGAAGTGGAGCACATGTGCAGCAATGCACTCGCCATGATCAAGAACATGACCGATACCGATATTGCCAACTACCACGCCAAAATGGGAGCTAACAGAAACCTCATTGAGAACGCCGACGCCGGAGACGCCGCCATCATCTGGCCCCACTGGCTCTCGCCCGGAGACCGCCGCCTTCTGCAGTCCTCCTCCGTCACGCCGGACGCGGTCGTGGCGGCGGACGGCAGTGGGAACTTCCGGACGGTGTCTGCAGCCGTGTCCGCCGCGCCGGACAAAAGCAAGAAGAGGTACATTATTAGAATCAAAGCCGGCGTCTACAGGGAGAATGTGGAAATTCCCAAGAAGAAAACCAATATAATGTTTGTGGGAGATGGACGAAGCAACACCATTATCACCGGCAGCCGGAATGTCGTCGACGGCAGCACCACTTTCAACTCTGCAACCGTCGCGGCGGTGGGGGAAGGATTTCTGGCGCGTGACATCACGTTCCAGAACACGGCGGGCCCATCGAAGCACCAAGCGGTGGCTCTCCGCGTCGGAGCGGATCTCTCCGCCTTCTACCAATGCGATATGTTGGCTTACCAAGACACTCTCTACGTCCATTCCAACCGTCAGTTCTACATTAACTGCCTTGTCTCCGGCACCGTCGATTTCATCTTCGGCAACGCGGCGGCGGTTTTCCAGGACTGTGACATCCACGCTCGTCGGCCCAACTCCGGCCAGAAGAACATGGTCACGGCTCAGGGACGGTCCGACCCGAACCAGAACACCGGGATCGTGATTCAGAAATCCCGAATCGGAGCCACCTCAGATCTCCGGTCGGTTCAGAAAAACTTCCCGACGTTTCTCGGAAGGCCATGGAAGGAATATTCTAGAACCGTGATTATGCAGTCGTCGATAAGTGACGTCATCGACCCCAAGGGGTGGCACGAGTGGAGCGGTAATTTCGCGCTCAATACGTTGTTCTACGCCGAGTATCAGAACACCGGCCCGGGGGCTTCGACGGCCGGGAGAGTGACGTGGAAAGGATTTAAAGTAATTCGAAGTGCCACGGAGGCCGAACCTTTCACCGCCGGCAGATTCATCGGCGGCGGGAGTTGGCTGCGGGCAACTGGTTTTCCGTTCTCCCTAGGCCTATAA 1770 57.01 MEKPIVAGMEISDSGHRSTPVPRNRNSKKTLLLALSAALLVVGAVVGIVAGVTKSRNSGRQSEEAHAIVKSTCSATLYPELCFSTISRSEGAMKKVSNQKDVIELSINITVKAVEENYFRVQKLAALKNITHRERIALHDCLETIDETLDELHKSIVDLHQYPNKKSLDQHADDLKTLLSSAITNQETCLDGFSHDDADKSLRKKLEEGQKEVEHMCSNALAMIKNMTDTDIANYHAKMGANRNLIENADAGDAAIIWPHWLSPGDRRLLQSSSVTPDAVVAADGSGNFRTVSAAVSAAPDKSKKRYIIRIKAGVYRENVEIPKKKTNIMFVGDGRSNTIITGSRNVVDGSTTFNSATVAAVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYQCDMLAYQDTLYVHSNRQFYINCLVSGTVDFIFGNAAAVFQDCDIHARRPNSGQKNMVTAQGRSDPNQNTGIVIQKSRIGATSDLRSVQKNFPTFLGRPWKEYSRTVIMQSSISDVIDPKGWHEWSGNFALNTLFYAEYQNTGPGASTAGRVTWKGFKVIRSATEAEPFTAGRFIGGGSWLRATGFPFSLGL 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1300301 1304026 + MC09g0145 Mch9g0172 697054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g0172 589 SUPERFAMILY Pectin lyase-like 275 588 IPR011050 -
Mch9g0172 589 SMART PMEI_2 64 223 IPR006501 GO:0004857(InterPro)
Mch9g0172 589 FunFam Pectinesterase 272 589 - -
Mch9g0172 589 Pfam Pectinesterase 278 574 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Mch9g0172 589 ProSitePatterns Pectinesterase signature 1. 303 322 IPR018040 -
Mch9g0172 589 Pfam Plant invertase/pectin methylesterase inhibitor 68 223 IPR006501 GO:0004857(InterPro)
Mch9g0172 589 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 68 228 IPR035513 -
Mch9g0172 589 CDD PMEI-like_3 71 228 - -
Mch9g0172 589 MobiDBLite consensus disorder prediction 1 24 - -
Mch9g0172 589 FunFam Pectinesterase 65 228 - -
Mch9g0172 589 NCBIfam pectinesterase inhibitor domain 39 227 IPR006501 GO:0004857(InterPro)
Mch9g0172 589 Gene3D Invertase/pectin methylesterase inhibitor family protein 65 228 IPR035513 -
Mch9g0172 589 ProSitePatterns Pectinesterase signature 2. 422 431 IPR033131 -
Mch9g0172 589 Gene3D - 272 589 IPR012334 -
Mch9g0172 589 PANTHER PECTINESTERASE 32 580 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g1788 Mch-Chr6:20412532 Mch9g0172 Mch-Chr9:1300301 8.16E-18 dispersed
Mch6g2637 Mch-Chr6:28128557 Mch9g0172 Mch-Chr9:1300301 2.57E-86 dispersed
Mch8g1007 Mch-Chr8:7154372 Mch9g0172 Mch-Chr9:1300301 4.97E-282 dispersed
Mch9g0172 Mch-Chr9:1300301 Mch9g0697 Mch-Chr9:5247033 3.35E-163 dispersed
Mch2g1618 Mch-Chr2:13377755 Mch9g0172 Mch-Chr9:1300301 1.28E-88 transposed
Mch2g1641 Mch-Chr2:13950534 Mch9g0172 Mch-Chr9:1300301 1.82E-90 transposed
Mch9g0104 Mch-Chr9:854390 Mch9g0172 Mch-Chr9:1300301 2.68E-50 transposed
Mch8g1006 Mch-Chr8:7149800 Mch9g0172 Mch-Chr9:1300301 5.37E-132 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g0172 K01051 - csv:101212388 966.066