Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g0178 ATGGTGCTTCATTCTCAAGTTGCTACTAGATATACTTGTAGGCTTCTTGCAGTCCCCTCCTGTGGAGTTCCTGAAGATGAAAGTAAGAAGGATAATACAGAGGATCAGCAGAGATATCCATTTCCACAATTAAGTTCTTCTGGGCGTTTGGAGGTCCAGGTTTTGACCAATCCTAGTAAAGATGAGTTTTGTAGGACTATTGAATCATATAGACCGAACATTGTTTACTTACAAGGGGAACGGCTCGAGAATGATGAAGTTGGTTCTTTAATATGGGGAGGTGTTGACCTGTCCACAGTAGAAGCAATAAGTGGGCTCTTTAGTTCTCTGTTGCCCGCCACTGTATATTTGGATATAGCAAATGGAGATGAAGTAGCTGATGCACTCCACTCCAAGGGTATTCCTTATGTCATATATTGGGGAAGCACATTTTCTTGTTATGCAGCTTGTCATTTCCGTAATGCATTCCTGTCGGTTCTTCAGAGTTCAACTGCTCATACATGGGATGCATTTCAACTTGCACACGCTTCATTTAGGATGTATTGCTCAGGAAACAGCCTTTACCTTCCTACGGGTAGTAATAAAGAAGTTAATGAAGATCTTGGACCGCATCTTCTGGGGGAACGTTTGAAAATAAACGTCGAACCCCTTGAGAAAGAGGCAGCTGAGGATGAAGAAAGTTCATTGGAAACTCCTTCTCTGAGCATACTTGATAATGATGTTGAAATGAGATTTCTCATATGTGGAGAACCAGGCTCATTGGATGCTTATGTATTAGGAGCTCTGGAGGATGGTCTTAATGCCCTCTTGGACATCGAAATTCGGGGGTCCAAACTTCACGGCAAATTCAGTGCCCCTCCTCCACCTCTTCAGGCAGGAACCATCTCTAATGGTGTTGTTACCATGCGCTGTGATATATCGACATGCAGTTTTGCCCACGTCTCGCTTTTGGTCTCAGGAAGTGCACAAGCTTGTTTTGATGATCAACTATTCGAAAATTATATAAAGAATGAGATTATTGAAAGAGGCGAACTAGTGCAGACACTAGTAGATGATGAAGGAAGCAAATACCTATGTGAGCCACGGAAATCTGCTTCAATTGCTTGTGGGGCAACAGTGTTTGAAGTTAGCTTGAAGGTCCCTTCATGGGCATCTCAGATTTTAAGGCAGTTGGCCCCTGATGTTTCTTTTCGAAGTTTAGTAGCACTGGGCATTGCCAGCATCCAGGGTTTGTCTGTTGCTTCTTTTGAGAAGGATGATGCTGAACGCCTCCTTTTCTTCCGTTCAAGGAAGGAAAAAGATTTCATTCTGAGCAATTTAACTGATAGCACACACCCTAGTTGGTTGAAGCCTCCTGCTCCTGTAAGGAGATCTAAAAGGATGAAAGACAGAAGCCATGGTTCTCATGATAATCTTGAACGCCTGAAGGTTTCTTCTGCTAGCAGAATAGATGATGGGAACATGGAAATAGGATTGAGGAATGGTTATATCACTCCCATGCTTCCGCTCCCAAGAAGGAGAGGAATGAAAATTGCTGCAATGAGGCCCATTCCTCATGTTAATCGCCACAAAATGATATCTTTTCCTAGAATAGCTGAGACAGGTGGGCACAATGGAGGCATGGTTAAAGCTAGTGTCCCTTCTATTAACCCCACAAAGCATATTACCGTAGGTTCAGCTTCAGTTTCACAACAAAAAATCTTTCCAAGTGCATCTCAATATAAACAAATTATTCCCTTGAATCCGCTACCTTTGAAGAAGCATGGTTGTGGCAGAAGTCCTATACATGCCTGCTTTGAGGATGAGTTTTTGAAGGATTTATTGCAGTTTCTAGCTCTTCGAGGTCACCATCGACTCATTCCTCAAGGTGGGCTCGCGGAGTTTCCAGATGCAATACTCAATGGAAAGCGTCTTGACCTTTACAACTTGTACAAGGAGGTGGTTTCAAGAGGTGGCTTTCGTGTTGGAAATGGCATTAACTGGAAAGGACAGATCTTCTCAAAGATGCGGAATTACACCATGACCAACAGAATGACAGGGGTTGGAAACACGCTTAAAAGACATTACGAGACTTATCTTCTCGAGTACGAATTGGCACATGAAGATGTAGATGGCGAATGTTGCCTTTTGTGTCACAGTAGTGCAGCAGGGGATTGGGTGAACTGTGGTGATTGTGGCGAGTGGGCTCACTTTGGTTGTGACAGAAGGCAGGGTCTCGGCGCATTTAAGGATTATGCAAAAACTGATGGTTTAGAATACATATGCCCACACTGTAGTGTTGCTAATTATAAGAAGAAGAAACTTGCAAATGGGTTGTCTCCAGGCTTATCCTCAAGACCAATATGA 2346 43.18 MVLHSQVATRYTCRLLAVPSCGVPEDESKKDNTEDQQRYPFPQLSSSGRLEVQVLTNPSKDEFCRTIESYRPNIVYLQGERLENDEVGSLIWGGVDLSTVEAISGLFSSLLPATVYLDIANGDEVADALHSKGIPYVIYWGSTFSCYAACHFRNAFLSVLQSSTAHTWDAFQLAHASFRMYCSGNSLYLPTGSNKEVNEDLGPHLLGERLKINVEPLEKEAAEDEESSLETPSLSILDNDVEMRFLICGEPGSLDAYVLGALEDGLNALLDIEIRGSKLHGKFSAPPPPLQAGTISNGVVTMRCDISTCSFAHVSLLVSGSAQACFDDQLFENYIKNEIIERGELVQTLVDDEGSKYLCEPRKSASIACGATVFEVSLKVPSWASQILRQLAPDVSFRSLVALGIASIQGLSVASFEKDDAERLLFFRSRKEKDFILSNLTDSTHPSWLKPPAPVRRSKRMKDRSHGSHDNLERLKVSSASRIDDGNMEIGLRNGYITPMLPLPRRRGMKIAAMRPIPHVNRHKMISFPRIAETGGHNGGMVKASVPSINPTKHITVGSASVSQQKIFPSASQYKQIIPLNPLPLKKHGCGRSPIHACFEDEFLKDLLQFLALRGHHRLIPQGGLAEFPDAILNGKRLDLYNLYKEVVSRGGFRVGNGINWKGQIFSKMRNYTMTNRMTGVGNTLKRHYETYLLEYELAHEDVDGECCLLCHSSAAGDWVNCGDCGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVANYKKKKLANGLSPGLSSRPI 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1337873 1346297 + MC09g0151 Mch9g0178 697060

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g0178 781 SUPERFAMILY ARID-like 600 712 IPR036431 GO:0003677(InterPro)
Mch9g0178 781 SUPERFAMILY FYVE/PHD zinc finger 693 761 IPR011011 -
Mch9g0178 781 CDD ARID 600 697 - -
Mch9g0178 781 Pfam ARID/BRIGHT DNA binding domain 601 697 IPR001606 GO:0003677(InterPro)
Mch9g0178 781 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 773 IPR042293 -
Mch9g0178 781 ProSiteProfiles ARID domain profile. 597 701 IPR001606 GO:0003677(InterPro)
Mch9g0178 781 SMART bright_3 598 702 IPR001606 GO:0003677(InterPro)
Mch9g0178 781 MobiDBLite consensus disorder prediction 447 471 - -
Mch9g0178 781 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 701 764 IPR013083 -
Mch9g0178 781 CDD PHD_ARID4_like 707 758 - -
Mch9g0178 781 Gene3D - 595 700 IPR036431 GO:0003677(InterPro)
Mch9g0178 781 SMART ARID_2 594 697 - -
Mch9g0178 781 MobiDBLite consensus disorder prediction 22 42 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g0178 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g1003 Mch-Chr8:7123015 Mch9g0178 Mch-Chr9:1337873 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch7g0866 . 115 457 ARID Transcription Factor Family AT1G04880 60.7 1.3e-109 393.7
Mch10g1836 . 200 479 ARID Transcription Factor Family AT1G20910 60.1 3.0e-91 332.4
Mch11g0083 . 16 309 ARID Transcription Factor Family AT1G76110 67.9 3.5e-112 401.7
Mch10g1836 . 188 509 ARID Transcription Factor Family AT1G76510 60.8 7.1e-110 394.4
Mch8g1003 . 2 781 ARID Transcription Factor Family AT3G43240 58.0 7.1e-259 890.2
Mch9g0178 . 2 771 ARID Transcription Factor Family AT3G43240 57.9 1.2e-258 889.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001323 3 5 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 9 3 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43982 PF01388 ARID 3.40E-15 CL0123 Mch TR