Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g0178 ATGGTGCTTCATTCTCAAGTTGCTACTAGATATACTTGTAGGCTTCTTGCAGTCCCCTCCTGTGGAGTTCCTGAAGATGAAAGTAAGAAGGATAATACAGAGGATCAGCAGAGATATCCATTTCCACAATTAAGTTCTTCTGGGCGTTTGGAGGTCCAGGTTTTGACCAATCCTAGTAAAGATGAGTTTTGTAGGACTATTGAATCATATAGACCGAACATTGTTTACTTACAAGGGGAACGGCTCGAGAATGATGAAGTTGGTTCTTTAATATGGGGAGGTGTTGACCTGTCCACAGTAGAAGCAATAAGTGGGCTCTTTAGTTCTCTGTTGCCCGCCACTGTATATTTGGATATAGCAAATGGAGATGAAGTAGCTGATGCACTCCACTCCAAGGGTATTCCTTATGTCATATATTGGGGAAGCACATTTTCTTGTTATGCAGCTTGTCATTTCCGTAATGCATTCCTGTCGGTTCTTCAGAGTTCAACTGCTCATACATGGGATGCATTTCAACTTGCACACGCTTCATTTAGGATGTATTGCTCAGGAAACAGCCTTTACCTTCCTACGGGTAGTAATAAAGAAGTTAATGAAGATCTTGGACCGCATCTTCTGGGGGAACGTTTGAAAATAAACGTCGAACCCCTTGAGAAAGAGGCAGCTGAGGATGAAGAAAGTTCATTGGAAACTCCTTCTCTGAGCATACTTGATAATGATGTTGAAATGAGATTTCTCATATGTGGAGAACCAGGCTCATTGGATGCTTATGTATTAGGAGCTCTGGAGGATGGTCTTAATGCCCTCTTGGACATCGAAATTCGGGGGTCCAAACTTCACGGCAAATTCAGTGCCCCTCCTCCACCTCTTCAGGCAGGAACCATCTCTAATGGTGTTGTTACCATGCGCTGTGATATATCGACATGCAGTTTTGCCCACGTCTCGCTTTTGGTCTCAGGAAGTGCACAAGCTTGTTTTGATGATCAACTATTCGAAAATTATATAAAGAATGAGATTATTGAAAGAGGCGAACTAGTGCAGACACTAGTAGATGATGAAGGAAGCAAATACCTATGTGAGCCACGGAAATCTGCTTCAATTGCTTGTGGGGCAACAGTGTTTGAAGTTAGCTTGAAGGTCCCTTCATGGGCATCTCAGATTTTAAGGCAGTTGGCCCCTGATGTTTCTTTTCGAAGTTTAGTAGCACTGGGCATTGCCAGCATCCAGGGTTTGTCTGTTGCTTCTTTTGAGAAGGATGATGCTGAACGCCTCCTTTTCTTCCGTTCAAGGAAGGAAAAAGATTTCATTCTGAGCAATTTAACTGATAGCACACACCCTAGTTGGTTGAAGCCTCCTGCTCCTGTAAGGAGATCTAAAAGGATGAAAGACAGAAGCCATGGTTCTCATGATAATCTTGAACGCCTGAAGGTTTCTTCTGCTAGCAGAATAGATGATGGGAACATGGAAATAGGATTGAGGAATGGTTATATCACTCCCATGCTTCCGCTCCCAAGAAGGAGAGGAATGAAAATTGCTGCAATGAGGCCCATTCCTCATGTTAATCGCCACAAAATGATATCTTTTCCTAGAATAGCTGAGACAGGTGGGCACAATGGAGGCATGGTTAAAGCTAGTGTCCCTTCTATTAACCCCACAAAGCATATTACCGTAGGTTCAGCTTCAGTTTCACAACAAAAAATCTTTCCAAGTGCATCTCAATATAAACAAATTATTCCCTTGAATCCGCTACCTTTGAAGAAGCATGGTTGTGGCAGAAGTCCTATACATGCCTGCTTTGAGGATGAGTTTTTGAAGGATTTATTGCAGTTTCTAGCTCTTCGAGGTCACCATCGACTCATTCCTCAAGGTGGGCTCGCGGAGTTTCCAGATGCAATACTCAATGGAAAGCGTCTTGACCTTTACAACTTGTACAAGGAGGTGGTTTCAAGAGGTGGCTTTCGTGTTGGAAATGGCATTAACTGGAAAGGACAGATCTTCTCAAAGATGCGGAATTACACCATGACCAACAGAATGACAGGGGTTGGAAACACGCTTAAAAGACATTACGAGACTTATCTTCTCGAGTACGAATTGGCACATGAAGATGTAGATGGCGAATGTTGCCTTTTGTGTCACAGTAGTGCAGCAGGGGATTGGGTGAACTGTGGTGATTGTGGCGAGTGGGCTCACTTTGGTTGTGACAGAAGGCAGGGTCTCGGCGCATTTAAGGATTATGCAAAAACTGATGGTTTAGAATACATATGCCCACACTGTAGTGTTGCTAATTATAAGAAGAAGAAACTTGCAAATGGGTTGTCTCCAGGCTTATCCTCAAGACCAATATGA 2346 43.18 MVLHSQVATRYTCRLLAVPSCGVPEDESKKDNTEDQQRYPFPQLSSSGRLEVQVLTNPSKDEFCRTIESYRPNIVYLQGERLENDEVGSLIWGGVDLSTVEAISGLFSSLLPATVYLDIANGDEVADALHSKGIPYVIYWGSTFSCYAACHFRNAFLSVLQSSTAHTWDAFQLAHASFRMYCSGNSLYLPTGSNKEVNEDLGPHLLGERLKINVEPLEKEAAEDEESSLETPSLSILDNDVEMRFLICGEPGSLDAYVLGALEDGLNALLDIEIRGSKLHGKFSAPPPPLQAGTISNGVVTMRCDISTCSFAHVSLLVSGSAQACFDDQLFENYIKNEIIERGELVQTLVDDEGSKYLCEPRKSASIACGATVFEVSLKVPSWASQILRQLAPDVSFRSLVALGIASIQGLSVASFEKDDAERLLFFRSRKEKDFILSNLTDSTHPSWLKPPAPVRRSKRMKDRSHGSHDNLERLKVSSASRIDDGNMEIGLRNGYITPMLPLPRRRGMKIAAMRPIPHVNRHKMISFPRIAETGGHNGGMVKASVPSINPTKHITVGSASVSQQKIFPSASQYKQIIPLNPLPLKKHGCGRSPIHACFEDEFLKDLLQFLALRGHHRLIPQGGLAEFPDAILNGKRLDLYNLYKEVVSRGGFRVGNGINWKGQIFSKMRNYTMTNRMTGVGNTLKRHYETYLLEYELAHEDVDGECCLLCHSSAAGDWVNCGDCGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVANYKKKKLANGLSPGLSSRPI 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1337873 1346297 + MC09g0151 Mch9g0178 697060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g0178 781 SUPERFAMILY ARID-like 600 712 IPR036431 GO:0003677(InterPro)
Mch9g0178 781 SUPERFAMILY FYVE/PHD zinc finger 693 761 IPR011011 -
Mch9g0178 781 CDD ARID 600 697 - -
Mch9g0178 781 Pfam ARID/BRIGHT DNA binding domain 601 697 IPR001606 GO:0003677(InterPro)
Mch9g0178 781 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 773 IPR042293 -
Mch9g0178 781 ProSiteProfiles ARID domain profile. 597 701 IPR001606 GO:0003677(InterPro)
Mch9g0178 781 SMART bright_3 598 702 IPR001606 GO:0003677(InterPro)
Mch9g0178 781 MobiDBLite consensus disorder prediction 447 471 - -
Mch9g0178 781 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 701 764 IPR013083 -
Mch9g0178 781 CDD PHD_ARID4_like 707 758 - -
Mch9g0178 781 Gene3D - 595 700 IPR036431 GO:0003677(InterPro)
Mch9g0178 781 SMART ARID_2 594 697 - -
Mch9g0178 781 MobiDBLite consensus disorder prediction 22 42 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g1003 Mch-Chr8:7123015 Mch9g0178 Mch-Chr9:1337873 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43982 PF01388 ARID 3.40E-15 CL0123 Mch TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g0178 - - - 0.0