Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g0232 AGAGAGATCTCGTTATCCGACTTTACCCTTCAACAACTTCAAATTTCCCGTTCACGATCGGTAATCTGCAGTTTTTTTACTCCATTCCGTCTCGAGAAGGTATTCAGCCACCGGGAGGAGCGAGGAGCGACGGCAATGGAGGGAGGTGGAGCAGTGCACAATCGCACAGTGGAAGATGTTTTCAGTGATTTTAGAGGCCGTAGAAATGGTGTCATCAAAGCCCTCACCGTAGATGTTGAAGAATTCTTTCAACAATGCGATCCTGAGAAGGAAAATCTATGCTTGTATGGCTTTCCAAATGAACAATGGGAGGTTAATTTACCTGCTGAAGAAGTACCTCCAGAACTCCCAGAGCCGGCGTTGGGTATTAATTTTGCTAGAGATGGCATGCAAGAAAGGGATTGGTTGGCCTTGGTTGCTGTCCACAGTGATTCTTGGTTGCTCTCTGTTGCCTTCTACTTCGGTGCGAGATTTGGATTTGAAAAATCTGACAGGAGGCGGCTTTTTAATATGATAAATGAATTGCCAACTGTATTTGAAGTAGTCACAGGCATTGCAAAGAAACAAGTCAAGGAAAAGTCATCGAGTGCTAATGGTAGCAAGTCCAAGTCAAATTATAAAGCACGGGAAGCAGATATTCAAGGAATGTATAGGCAGCAGCCACAGGCAAGGGAAGAGGTAGACGTCTTGTACGAAGAAGATGAGGACGAGCACGGTGAGACCTTGTGTGGGGCGTGTGGTGAGAACTATGCATCAGACGAATTTTGGATTTGCTGCGATATCTGTGAGAAGTGGTTCCATGGAAAGTGTGTGAGAATAACCCCTGCCAAAGCAGAGCACATTAAGCAGTACAAGTGCCCATCCTGCAGCAACAAGAGAGGCCGCCTCTAA 891 46.02 REISLSDFTLQQLQISRSRSVICSFFTPFRLEKVFSHREERGATAMEGGGAVHNRTVEDVFSDFRGRRNGVIKALTVDVEEFFQQCDPEKENLCLYGFPNEQWEVNLPAEEVPPELPEPALGINFARDGMQERDWLALVAVHSDSWLLSVAFYFGARFGFEKSDRRRLFNMINELPTVFEVVTGIAKKQVKEKSSSANGSKSKSNYKAREADIQGMYRQQPQAREEVDVLYEEDEDEHGETLCGACGENYASDEFWICCDICEKWFHGKCVRITPAKAEHIKQYKCPSCSNKRGRL 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1738377 1743992 + MC09g0198 Mch9g0232 697114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g0232 296 CDD PHD_AL_plant 242 292 IPR044104 -
Mch9g0232 296 SUPERFAMILY FYVE/PHD zinc finger 232 294 IPR011011 -
Mch9g0232 296 ProSitePatterns Zinc finger PHD-type signature. 243 289 IPR019786 -
Mch9g0232 296 PANTHER CPG BINDING PROTEIN 54 295 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Mch9g0232 296 Pfam PHD-finger 243 289 IPR019787 -
Mch9g0232 296 ProSiteProfiles Zinc finger PHD-type profile. 240 292 IPR019787 -
Mch9g0232 296 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 233 291 IPR013083 -
Mch9g0232 296 FunFam PHD finger alfin-like protein 235 291 - -
Mch9g0232 296 Pfam Alfin 56 183 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Mch9g0232 296 SMART PHD_3 242 290 IPR001965 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0597 Mch-Chr10:4024756 Mch9g0232 Mch-Chr9:1738377 2.47E-118 dispersed
Mch9g0232 Mch-Chr9:1738377 Mch9g1466 Mch-Chr9:17072421 1.01E-112 dispersed
Mch6g0951 Mch-Chr6:6738202 Mch9g0232 Mch-Chr9:1738377 4.86E-53 wgd
Mch8g0546 Mch-Chr8:3936328 Mch9g0232 Mch-Chr9:1738377 5.58E-140 wgd
Mch8g3233 Mch-Chr8:34353573 Mch9g0232 Mch-Chr9:1738377 9.99E-128 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43989 PF12165 Alfin 7.60E-68 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g0232 K26274 - csv:101222322 483.026