Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g0240 ATGGCAGGTTTGGCTCCAGAAGGATCCCAATTTGATTCTCGCCAATATGATGCTAAAATGAGCGAGATTCTTTCAGCTGAAGGGCAGGAATTTTTTACCTCGTACGATGAAGTTTATGACAGTTTTGATGCTATGGGGCTGCAAGAAAACCTCCTTAGAGGAATTTATGCCTATGGTTTTGAGAAGCCGTCTGCTATCCAGCAAAGGGGTATTGTTCCCTTCTGCAAAGGTCTTGACGTGATTCAGCAGGCCCAATCTGGAACTGGGAAGACTGCAACCTTCTGCTCTGGGATTCTGCAGCAACTTGATTATGGTCTAGTTCAGTGCCAGGCTTTAGTTCTGGCACCGACTAGGGAGCTTGCTCAACAAATTGAGAAGGTTATGAGAGCTCTGGGAGATTATCTTGGTGTTAAGGTTCACGCTTGTGTAGGAGGAACAAGTGTCCGTGAGGATCAACGCATTCTTCAAGCCGGTGTTCATGTTGTAGTTGGAACTCCTGGTCGTGTGTTTGACATGTTAAGGAGGCAGTCTCTCCGCCCTGATTCTATTAAGATGTTTGTACTGGATGAAGCTGATGAAATGCTTTCTCGTGGTTTTAAAGATCAGATTTATGACATTTTCCAGCTTCTGCCATCAAAAATTCAAGTTGGGGTATTCTCCGCCACAATGCCACCCGAAGCTTTGGAAATCACTAGGAAATTCATGAACAAGCCTGTCAGAATCTTGGTAAAACGTGATGAGCTTACTTTGGAGGGTATCAAGCAATTTTATGTAAATGTCGATAAGGAAGACTGGAAGCTTGAAACTCTATGTGATCTCTACGAGACTCTGGCCATTACTCAAAGTGTCATCTTTGTTAACACACGCCGTAAGGTCGATTGGCTTACCGACAAGATGAGAAGCCGTGACCATACGGTATCTGCAACCCATGGTGACATGGACCAGAACACCCGAGATATAATCATGCGTGAATTTCGGTCTGGCTCTTCTCGTGTTCTTATCACGACTGATTTATTGGCTCGTGGTATCGACGTTCAGCAAGTGTCTCTTGTGATAAACTATGATTTGCCAACCCAACCAGAAAATTACCTTCACCGAATAGGGCGAAGTGGGCGTTTCGGAAGGAAGGGTGTTGCCATCAACTTTGTTACAACTGACGATGAGAGAATGCTTTTTGATATTCAGAAGTTCTATAATGTGGTCGTCGAGGAGCTGCCAGCTAATGTCGCTGATCTCCTATGA 1242 44.69 MAGLAPEGSQFDSRQYDAKMSEILSAEGQEFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDSIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTDDERMLFDIQKFYNVVVEELPANVADLL 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1818171 1821404 + MC09g_new0036 Mch9g0240 697122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g0240 413 Gene3D - 249 413 IPR027417 -
Mch9g0240 413 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 71 241 IPR014001 -
Mch9g0240 413 Pfam DEAD/DEAH box helicase 65 227 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Mch9g0240 413 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 394 IPR027417 -
Mch9g0240 413 FunFam Eukaryotic initiation factor 4A-II 28 247 - -
Mch9g0240 413 SMART helicmild6 293 374 IPR001650 -
Mch9g0240 413 Pfam Helicase conserved C-terminal domain 266 374 IPR001650 -
Mch9g0240 413 CDD DEADc_EIF4A 44 242 - -
Mch9g0240 413 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 37 399 - GO:0003723(PANTHER)|GO:0003724(PANTHER)
Mch9g0240 413 SMART ultradead3 59 256 IPR014001 -
Mch9g0240 413 FunFam Eukaryotic initiation factor 4A-III 248 413 - -
Mch9g0240 413 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 187 195 IPR000629 -
Mch9g0240 413 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 252 413 IPR001650 -
Mch9g0240 413 CDD SF2_C_DEAD 253 383 - -
Mch9g0240 413 Gene3D - 30 248 IPR027417 -
Mch9g0240 413 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 40 68 IPR014014 GO:0003724(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0027 Mch-Chr11:206737 Mch9g0240 Mch-Chr9:1818171 7.01E-52 transposed
Mch11g0923 Mch-Chr11:6301723 Mch9g0240 Mch-Chr9:1818171 1.94E-59 transposed
Mch11g1498 Mch-Chr11:12008063 Mch9g0240 Mch-Chr9:1818171 1.82E-32 transposed
Mch1g2056 Mch-Chr1:19941943 Mch9g0240 Mch-Chr9:1818171 1.46E-25 transposed
Mch2g0062 Mch-Chr2:495372 Mch9g0240 Mch-Chr9:1818171 1.93E-56 transposed
Mch2g0751 Mch-Chr2:5157210 Mch9g0240 Mch-Chr9:1818171 1.08E-64 transposed
Mch5g0378 Mch-Chr5:2574357 Mch9g0240 Mch-Chr9:1818171 2.64E-87 transposed
Mch5g0792 Mch-Chr5:5516381 Mch9g0240 Mch-Chr9:1818171 2.24E-49 transposed
Mch5g1683 Mch-Chr5:17604419 Mch9g0240 Mch-Chr9:1818171 4.62E-63 transposed
Mch6g0121 Mch-Chr6:698516 Mch9g0240 Mch-Chr9:1818171 2.92E-49 transposed
Mch6g1805 Mch-Chr6:20661921 Mch9g0240 Mch-Chr9:1818171 3.21E-62 transposed
Mch6g1879 Mch-Chr6:21301015 Mch9g0240 Mch-Chr9:1818171 3.98E-55 transposed
Mch6g2220 Mch-Chr6:24454630 Mch9g0240 Mch-Chr9:1818171 7.00E-52 transposed
Mch6g2496 Mch-Chr6:26879849 Mch9g0240 Mch-Chr9:1818171 7.46E-44 transposed
Mch6g2688 Mch-Chr6:28572710 Mch9g0240 Mch-Chr9:1818171 1.54E-31 transposed
Mch6g2729 Mch-Chr6:28888571 Mch9g0240 Mch-Chr9:1818171 3.17E-61 transposed
Mch7g0906 Mch-Chr7:13607497 Mch9g0240 Mch-Chr9:1818171 9.52E-32 transposed
Mch8g0455 Mch-Chr8:3237491 Mch9g0240 Mch-Chr9:1818171 1.60E-73 transposed
Mch8g0984 Mch-Chr8:7012121 Mch9g0240 Mch-Chr9:1818171 2.42E-296 transposed
Mch8g1253 Mch-Chr8:9037118 Mch9g0240 Mch-Chr9:1818171 1.36E-56 transposed
Mch8g1494 Mch-Chr8:11342256 Mch9g0240 Mch-Chr9:1818171 2.88E-49 transposed
Mch8g2031 Mch-Chr8:22767382 Mch9g0240 Mch-Chr9:1818171 4.91E-54 transposed
Mch8g2083 Mch-Chr8:23828482 Mch9g0240 Mch-Chr9:1818171 1.20E-171 transposed
Mch9g0444 Mch-Chr9:3300212 Mch9g0240 Mch-Chr9:1818171 6.04E-55 transposed
Mch9g2207 Mch-Chr9:22612467 Mch9g0240 Mch-Chr9:1818171 2.65E-10 transposed
Mch8g0560 Mch-Chr8:4021250 Mch9g0240 Mch-Chr9:1818171 4.70E-65 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g0240 K03257 - csv:101221456 806.979