Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch9g0247 | ATGATGATGAAAGGCAATTTCCTAGCCATGGATGAAAATTTGTCCAATTTGACATCTGCATCTGGTGAACCAACTCCCAGTGTTTCCTCAGCCAATAATAAAACCGACTTCCCCAATCAATACTTCGATCCTCAAGCTCACCCACCGCCTCCCCCGAAGAAGAAGCGCAACCTCCCGGGGAACCCCGACCCAGATGCGGAGGTGATAGCGTTGTCGCCGAAGACGCTGATGGCGACGAACCGGTTCGTGTGCGAGATCTGCAACAAGGGGTTTCAGCGGGATCAGAACCTGCAGCTGCACCGGCGCGGGCACAATTTGCCGTGGAAGCTGAAGCAGAGGTCGAACAAAGAGGTGATAAGGAAGAAGGTGTATGTGTGCCCAGAAGGGAGCTGCGTGCACCACGACCCATCAAGGGCTCTTGGAGACCTCACAGGAATAAAAAAGCACTTCTGCAGAAAGCATGGGGAGAAGAAGTGGAAATGTGACAAGTGCTCTAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCACTCCAAGATCTGTGGCACCAAGGAGTACAGATGTGACTGTGGAACCCTCTTTTCTAGGAGAGATAGTTTCATTACTCACAGAGCCTTTTGTGATGCATTAGCAGATGAAAGTGCAAGATCAGCCATGGCCTTAAACCCTCTCCTCTCTTCCTACAATAACAATATCAATCCACAAGACCACCCCATTTCAAACAATATATTCTCGCTCAAAACCGACCTTAATAACAATAATAATAATAATAATATTATGAGTGCGGGCGAAATAATCCCACCATGGCTGCACCCGAGCGCTGATCAAGACCAGGCTCAGGCTCGAACTGTAAACCCTAATCCTAACCTTAACCCGAGCCATAACCCTAGCCATGGGCACGGGGGTGGAGTGAGTGTTGGTGTTGGCTATGGGCAGTCGAATTCAAGTGTGTCATCTCCACACATCTCAGCCACAGCACTGCTGCAGAAGGCAGCCCAAATGGGTGCCACCATGAGTAGTACCACTACCACGAGTGGCTCTATCCCTCGGCCCCACAACCTCCTTCACGTGTCTACTACAGGTAATTATGGGGAGATAAATTTAAGGTCACGTGAAGGTGAAATGGGGAGAGGAGGAGGGGCCGTCAGTTGTAGTAGTAGTAGTTGTACTGAGTATGGGAATAAAGCTGTTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCGCCCACATTTCTTCAACACATGATAAATTCTGCTTCTGCTTCTGCTTCTGCTTCTGTTTTCCTCCAAGATTCTCCCTTCCACGACGCCGCCGCCTTCGCCTCCGCAGCCGGTGGCGGCAGAAGTGAGGGCTTGACCAGAGATTTCTTGGGCCTTCGCCCTCTTTCCCATGGCGATATTCTAACCATTGCTGGTTTTGGAAACTGCATTCTCCCCACTACTCACCACAGTCAGATCCACAAGCCATGGCAGGGTTAG | 1476 | 49.93 | MMMKGNFLAMDENLSNLTSASGEPTPSVSSANNKTDFPNQYFDPQAHPPPPPKKKRNLPGNPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEVIRKKVYVCPEGSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTKEYRCDCGTLFSRRDSFITHRAFCDALADESARSAMALNPLLSSYNNNINPQDHPISNNIFSLKTDLNNNNNNNNIMSAGEIIPPWLHPSADQDQAQARTVNPNPNLNPSHNPSHGHGGGVSVGVGYGQSNSSVSSPHISATALLQKAAQMGATMSSTTTTSGSIPRPHNLLHVSTTGNYGEINLRSREGEMGRGGGAVSCSSSSCTEYGNKAVSASASASASAPTFLQHMINSASASASASVFLQDSPFHDAAAFASAAGGGRSEGLTRDFLGLRPLSHGDILTIAGFGNCILPTTHHSQIHKPWQG | 491 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 1857760 | 1861344 | + | MC09g_new0040 | Mch9g0247 | 697129 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch9g0247 | 491 | Gene3D | Classic Zinc Finger | 61 | 130 | - | - | |
Mch9g0247 | 491 | MobiDBLite | consensus disorder prediction | 43 | 57 | - | - | |
Mch9g0247 | 491 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 158 | 182 | - | - | |
Mch9g0247 | 491 | MobiDBLite | consensus disorder prediction | 308 | 322 | - | - | |
Mch9g0247 | 491 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 82 | 104 | IPR013087 | - | |
Mch9g0247 | 491 | MobiDBLite | consensus disorder prediction | 337 | 361 | - | - | |
Mch9g0247 | 491 | Pfam | Zinc finger, C2H2 type | 82 | 104 | IPR013087 | - | |
Mch9g0247 | 491 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 137 | 216 | - | - | |
Mch9g0247 | 491 | Gene3D | Classic Zinc Finger | 137 | 216 | - | - | |
Mch9g0247 | 491 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 39 | 460 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Mch9g0247 | 491 | FunFam | protein indeterminate-domain 12-like | 61 | 130 | - | - | |
Mch9g0247 | 491 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 120 | 154 | - | - | |
Mch9g0247 | 491 | MobiDBLite | consensus disorder prediction | 15 | 40 | - | - | |
Mch9g0247 | 491 | MobiDBLite | consensus disorder prediction | 15 | 67 | - | - | |
Mch9g0247 | 491 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 84 | 104 | IPR013087 | - | |
Mch9g0247 | 491 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 185 | 219 | - | - | |
Mch9g0247 | 491 | SMART | c2h2final6 | 82 | 104 | IPR013087 | - | |
Mch9g0247 | 491 | SMART | c2h2final6 | 124 | 154 | IPR013087 | - | |
Mch9g0247 | 491 | SMART | c2h2final6 | 159 | 179 | IPR013087 | - | |
Mch9g0247 | 491 | MobiDBLite | consensus disorder prediction | 276 | 298 | - | - | |
Mch9g0247 | 491 | MobiDBLite | consensus disorder prediction | 268 | 322 | - | - | |
Mch9g0247 | 491 | SUPERFAMILY | beta-beta-alpha zinc fingers | 81 | 179 | IPR036236 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch9g0247 | Mch-Chr9:1857760 | Mch9g0902 | Mch-Chr9:7090729 | 1.61E-102 | dispersed | |
Mch11g0417 | Mch-Chr11:2625387 | Mch9g0247 | Mch-Chr9:1857760 | 2.75E-103 | wgd | |
Mch8g1263 | Mch-Chr8:9149053 | Mch9g0247 | Mch-Chr9:1857760 | 3.83E-131 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
43990 | PF00096 | zf-C2H2 | 0.0049 | CL0361 | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch9g0247 | K25870 | - | csv:101220200 | 606.675 |