Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g0247 ATGATGATGAAAGGCAATTTCCTAGCCATGGATGAAAATTTGTCCAATTTGACATCTGCATCTGGTGAACCAACTCCCAGTGTTTCCTCAGCCAATAATAAAACCGACTTCCCCAATCAATACTTCGATCCTCAAGCTCACCCACCGCCTCCCCCGAAGAAGAAGCGCAACCTCCCGGGGAACCCCGACCCAGATGCGGAGGTGATAGCGTTGTCGCCGAAGACGCTGATGGCGACGAACCGGTTCGTGTGCGAGATCTGCAACAAGGGGTTTCAGCGGGATCAGAACCTGCAGCTGCACCGGCGCGGGCACAATTTGCCGTGGAAGCTGAAGCAGAGGTCGAACAAAGAGGTGATAAGGAAGAAGGTGTATGTGTGCCCAGAAGGGAGCTGCGTGCACCACGACCCATCAAGGGCTCTTGGAGACCTCACAGGAATAAAAAAGCACTTCTGCAGAAAGCATGGGGAGAAGAAGTGGAAATGTGACAAGTGCTCTAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCACTCCAAGATCTGTGGCACCAAGGAGTACAGATGTGACTGTGGAACCCTCTTTTCTAGGAGAGATAGTTTCATTACTCACAGAGCCTTTTGTGATGCATTAGCAGATGAAAGTGCAAGATCAGCCATGGCCTTAAACCCTCTCCTCTCTTCCTACAATAACAATATCAATCCACAAGACCACCCCATTTCAAACAATATATTCTCGCTCAAAACCGACCTTAATAACAATAATAATAATAATAATATTATGAGTGCGGGCGAAATAATCCCACCATGGCTGCACCCGAGCGCTGATCAAGACCAGGCTCAGGCTCGAACTGTAAACCCTAATCCTAACCTTAACCCGAGCCATAACCCTAGCCATGGGCACGGGGGTGGAGTGAGTGTTGGTGTTGGCTATGGGCAGTCGAATTCAAGTGTGTCATCTCCACACATCTCAGCCACAGCACTGCTGCAGAAGGCAGCCCAAATGGGTGCCACCATGAGTAGTACCACTACCACGAGTGGCTCTATCCCTCGGCCCCACAACCTCCTTCACGTGTCTACTACAGGTAATTATGGGGAGATAAATTTAAGGTCACGTGAAGGTGAAATGGGGAGAGGAGGAGGGGCCGTCAGTTGTAGTAGTAGTAGTTGTACTGAGTATGGGAATAAAGCTGTTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCGCCCACATTTCTTCAACACATGATAAATTCTGCTTCTGCTTCTGCTTCTGCTTCTGTTTTCCTCCAAGATTCTCCCTTCCACGACGCCGCCGCCTTCGCCTCCGCAGCCGGTGGCGGCAGAAGTGAGGGCTTGACCAGAGATTTCTTGGGCCTTCGCCCTCTTTCCCATGGCGATATTCTAACCATTGCTGGTTTTGGAAACTGCATTCTCCCCACTACTCACCACAGTCAGATCCACAAGCCATGGCAGGGTTAG 1476 49.93 MMMKGNFLAMDENLSNLTSASGEPTPSVSSANNKTDFPNQYFDPQAHPPPPPKKKRNLPGNPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEVIRKKVYVCPEGSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTKEYRCDCGTLFSRRDSFITHRAFCDALADESARSAMALNPLLSSYNNNINPQDHPISNNIFSLKTDLNNNNNNNNIMSAGEIIPPWLHPSADQDQAQARTVNPNPNLNPSHNPSHGHGGGVSVGVGYGQSNSSVSSPHISATALLQKAAQMGATMSSTTTTSGSIPRPHNLLHVSTTGNYGEINLRSREGEMGRGGGAVSCSSSSCTEYGNKAVSASASASASAPTFLQHMINSASASASASVFLQDSPFHDAAAFASAAGGGRSEGLTRDFLGLRPLSHGDILTIAGFGNCILPTTHHSQIHKPWQG 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1857760 1861344 + MC09g_new0040 Mch9g0247 697129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g0247 491 Gene3D Classic Zinc Finger 61 130 - -
Mch9g0247 491 MobiDBLite consensus disorder prediction 43 57 - -
Mch9g0247 491 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 158 182 - -
Mch9g0247 491 MobiDBLite consensus disorder prediction 308 322 - -
Mch9g0247 491 ProSiteProfiles Zinc finger C2H2 type domain profile. 82 104 IPR013087 -
Mch9g0247 491 MobiDBLite consensus disorder prediction 337 361 - -
Mch9g0247 491 Pfam Zinc finger, C2H2 type 82 104 IPR013087 -
Mch9g0247 491 FunFam protein indeterminate-domain 5, chloroplastic-like 137 216 - -
Mch9g0247 491 Gene3D Classic Zinc Finger 137 216 - -
Mch9g0247 491 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 39 460 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Mch9g0247 491 FunFam protein indeterminate-domain 12-like 61 130 - -
Mch9g0247 491 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 120 154 - -
Mch9g0247 491 MobiDBLite consensus disorder prediction 15 40 - -
Mch9g0247 491 MobiDBLite consensus disorder prediction 15 67 - -
Mch9g0247 491 ProSitePatterns Zinc finger C2H2 type domain signature. 84 104 IPR013087 -
Mch9g0247 491 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 185 219 - -
Mch9g0247 491 SMART c2h2final6 82 104 IPR013087 -
Mch9g0247 491 SMART c2h2final6 124 154 IPR013087 -
Mch9g0247 491 SMART c2h2final6 159 179 IPR013087 -
Mch9g0247 491 MobiDBLite consensus disorder prediction 276 298 - -
Mch9g0247 491 MobiDBLite consensus disorder prediction 268 322 - -
Mch9g0247 491 SUPERFAMILY beta-beta-alpha zinc fingers 81 179 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch9g0247 Mch-Chr9:1857760 Mch9g0902 Mch-Chr9:7090729 1.61E-102 dispersed
Mch11g0417 Mch-Chr11:2625387 Mch9g0247 Mch-Chr9:1857760 2.75E-103 wgd
Mch8g1263 Mch-Chr8:9149053 Mch9g0247 Mch-Chr9:1857760 3.83E-131 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43990 PF00096 zf-C2H2 0.0049 CL0361 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g0247 K25870 - csv:101220200 606.675