Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g0250 ATGAGCAGCAGCAGCACCCACCACCACAGCAGATCCCACCCGCCGCCGTCCTCCGCCACCACCCAGGCCTGCGCCGCCTGCAAATACCAGCGCCGGAAGTGCGCCCCGGACTGCATTCTTGCCCCATACTTCCCCCACGACCGGCAGCGCCAATTCTTGAACGCCCACAAGCTCTTCGGCGTCAGCAACATCACCAAGATCATCAAGAACCTCGACCCCTTCGAGAAGGAAGAGGCCATGCGTACCATCATCTTCCAGTCCGACGTCCGCTCCCTCGACCCCGTCGGCGGCTGCTACCGCATCATCCGCGACCTCCAGCGTCAGATAGAGTATAGCAAGGCCGAGCTCGACATCGTCCTCCACCAACTCGCCATCTGCAAGCAAGCTGCGGCCGTGCAGCGGCATGAGGCGGTGGCGTTCAATGGGGAGATGGTGCTGTTGGATCCGGATCCGTTGAACGGGTACGGGGAGCCACAGCAGCAGCCACCGCCACCGCAGCACCAGTTTCTGCAGCCGTATGAGGTGGAGGTGGAGGCGGAGGCGTTTGCGGGGCAATTTGGGAGTAATAACGATGATAATAATTTTAGAGAGAGTTTGGATGGAGAAGTAGAAGTTGAAGTGTGGGGAATGCAGGATTCTCTTTCTTCCTCTTCTTTGCATATCAAACAGGGCGGCGCCGGCGCCGGCGCCCCTCTTAACGATTTTGATGATATCAAACTTCACACGGATCACCATGATCATCATCAGCATCATCAACATCTTAAGTTTCACCCTCATCATCATGACCTACTTCATCACAGTGAAGAAGCTATGCTGAAGATGGACAATGTGATGTTGAAAGAAGACTCTGACCCAATACAACAGGCTCAAGAGCAAGACCTTAAAGGTGCAGTAGACACTTTATTTACCTTCTCAAATTCTGATACTTAG 930 54.73 MSSSSTHHHSRSHPPPSSATTQACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKNLDPFEKEEAMRTIIFQSDVRSLDPVGGCYRIIRDLQRQIEYSKAELDIVLHQLAICKQAAAVQRHEAVAFNGEMVLLDPDPLNGYGEPQQQPPPPQHQFLQPYEVEVEAEAFAGQFGSNNDDNNFRESLDGEVEVEVWGMQDSLSSSSLHIKQGGAGAGAPLNDFDDIKLHTDHHDHHQHHQHLKFHPHHHDLLHHSEEAMLKMDNVMLKEDSDPIQQAQEQDLKGAVDTLFTFSNSDT 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1869935 1873883 + MC09g_new0041 Mch9g0250 697132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g0250 309 ProSiteProfiles LOB domain profile. 22 123 IPR004883 -
Mch9g0250 309 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 21 196 - -
Mch9g0250 309 Pfam Lateral organ boundaries (LOB) domain 23 118 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch9g0250 Mch-Chr9:1869935 Mch9g1433 Mch-Chr9:16724604 8.01E-22 dispersed
Mch2g0516 Mch-Chr2:3674653 Mch9g0250 Mch-Chr9:1869935 1.72E-22 transposed
Mch4g2279 Mch-Chr4:24248698 Mch9g0250 Mch-Chr9:1869935 2.46E-30 transposed
Mch8g0569 Mch-Chr8:4057664 Mch9g0250 Mch-Chr9:1869935 2.16E-34 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43991 PF03195 LOB 2.10E-35 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g0250 - - - 0.0