Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g0278 ATGGATGATCTGAACTGGGATGGATACGGATCGCGAGTGGCGATGAACACGACATCATCGCCGTGGTTTTGGAGCAATTACCAACCAGGATTGGGAGAAAAGTTTGTGTCATCCAACTCAAATTCCAACTTCTGCAACTCAGTTCAAGAGCTCCCAATGATTAAAGAAGCTGAAGATCCTCTGTTTTCAAAAACAGGGGAGGCTCTACCAATGGTTATGAGCCACCCATTGACTAACTTCACAACAACTCGTGAAGTAGGTGTTATTGATCTTGAACCACATATCCCCACCGGAGTGTCTGCGGCGGCGCCGGCGACGTGCTCTCTAGATTCATTGGACTGCCTACTTTCAGCAACAACAAACAGCAACACAGACACATCAGTAGAAGACGATGGGATTTCAATGATTTTGACAGATTACACCAATTTATGGAACTTTGGAGGGAATGCTAATGCAGTATGTTCTTCAAGGGAATCTGGGAAGAATGGGTCAAATTCTTCAAAGAGAAGCCATGATCAAACTCAATTCAAAGCAGGGGATTACTCTGTTTTCTCCAATGACATCATAATCCAATCAGATTCCACATCAGACAGTGGTGGGTTCAAGATCATATCAGATCAGAATCTGGCAAAACAAAAGAAACCCAGATCAGAAAAGCCACCAACTTCATCAAACATAAATTTTCAGCAAACTTGTTCATCTGGGTCATCTTGTATTGAGCAGGAGCCTGATCCAGAGGCCATTGCCCAGATGAAGGAGATGATCTACAGAGCAGCAGCTTTCAGGCCAGTGAATTTGGGGGTGGAAGTAGTGGAGAAGCCAAAGAGGAAGAATGTGAGAATTTCAACTGACCCACAAACTGTGGCAGCAAGACAGAGGAGAGAGAGAATCAGTGAGAGAATTAGGGTTCTACAGAGGCTGGTTCCTGGTGGGAACAAAATGGATACAGCATCAATGCTTGATGAAGCTGCAAATTATCTCAAGTTTTTGAAGTCTCAGATCAAAGCACTGGAGAATCTTGGGCAAAAGCTTGAGTCTTTGAATTGCCCTCCAACTAGTATAGCTTTCTCTTTCAACCCATCTTTTCCCATACAAACAACTTCATCCCATGACAGTTTCTCCCTCCAAAACCCCAACCATATTAACCAATTCCCCCAAAAC 1161 43.84 MDDLNWDGYGSRVAMNTTSSPWFWSNYQPGLGEKFVSSNSNSNFCNSVQELPMIKEAEDPLFSKTGEALPMVMSHPLTNFTTTREVGVIDLEPHIPTGVSAAAPATCSLDSLDCLLSATTNSNTDTSVEDDGISMILTDYTNLWNFGGNANAVCSSRESGKNGSNSSKRSHDQTQFKAGDYSVFSNDIIIQSDSTSDSGGFKIISDQNLAKQKKPRSEKPPTSSNINFQQTCSSGSSCIEQEPDPEAIAQMKEMIYRAAAFRPVNLGVEVVEKPKRKNVRISTDPQTVAARQRRERISERIRVLQRLVPGGNKMDTASMLDEAANYLKFLKSQIKALENLGQKLESLNCPPTSIAFSFNPSFPIQTTSSHDSFSLQNPNHINQFPQN 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2081253 2082413 + MC09g0234 Mch9g0278 697160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g0278 387 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 112 383 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch9g0278 387 Pfam Helix-loop-helix DNA-binding domain 290 331 IPR011598 GO:0046983(InterPro)
Mch9g0278 387 SMART finulus 287 336 IPR011598 GO:0046983(InterPro)
Mch9g0278 387 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 286 346 IPR036638 GO:0046983(InterPro)
Mch9g0278 387 MobiDBLite consensus disorder prediction 206 240 - -
Mch9g0278 387 Coils Coil 320 347 - -
Mch9g0278 387 MobiDBLite consensus disorder prediction 155 174 - -
Mch9g0278 387 Gene3D - 286 349 IPR036638 GO:0046983(InterPro)
Mch9g0278 387 MobiDBLite consensus disorder prediction 219 240 - -
Mch9g0278 387 FunFam BHLH transcription factor 284 348 - -
Mch9g0278 387 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 281 330 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g1357 Mch-Chr2:9653342 Mch9g0278 Mch-Chr9:2081253 2.24E-33 dispersed
Mch8g0679 Mch-Chr8:4848301 Mch9g0278 Mch-Chr9:2081253 1.95E-34 dispersed
Mch9g0278 Mch-Chr9:2081253 Mch9g0913 Mch-Chr9:7244657 6.68E-13 dispersed
Mch3g0878 Mch-Chr3:12745996 Mch9g0278 Mch-Chr9:2081253 1.68E-09 transposed
Mch4g0213 Mch-Chr4:1396936 Mch9g0278 Mch-Chr9:2081253 1.92E-09 transposed
Mch11g0386 Mch-Chr11:2416136 Mch9g0278 Mch-Chr9:2081253 2.15E-08 wgd
Mch8g1236 Mch-Chr8:8893080 Mch9g0278 Mch-Chr9:2081253 5.18E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43992 PF00010 HLH 7.50E-06 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g0278 - - - 0.0