Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch9g0278 | ATGGATGATCTGAACTGGGATGGATACGGATCGCGAGTGGCGATGAACACGACATCATCGCCGTGGTTTTGGAGCAATTACCAACCAGGATTGGGAGAAAAGTTTGTGTCATCCAACTCAAATTCCAACTTCTGCAACTCAGTTCAAGAGCTCCCAATGATTAAAGAAGCTGAAGATCCTCTGTTTTCAAAAACAGGGGAGGCTCTACCAATGGTTATGAGCCACCCATTGACTAACTTCACAACAACTCGTGAAGTAGGTGTTATTGATCTTGAACCACATATCCCCACCGGAGTGTCTGCGGCGGCGCCGGCGACGTGCTCTCTAGATTCATTGGACTGCCTACTTTCAGCAACAACAAACAGCAACACAGACACATCAGTAGAAGACGATGGGATTTCAATGATTTTGACAGATTACACCAATTTATGGAACTTTGGAGGGAATGCTAATGCAGTATGTTCTTCAAGGGAATCTGGGAAGAATGGGTCAAATTCTTCAAAGAGAAGCCATGATCAAACTCAATTCAAAGCAGGGGATTACTCTGTTTTCTCCAATGACATCATAATCCAATCAGATTCCACATCAGACAGTGGTGGGTTCAAGATCATATCAGATCAGAATCTGGCAAAACAAAAGAAACCCAGATCAGAAAAGCCACCAACTTCATCAAACATAAATTTTCAGCAAACTTGTTCATCTGGGTCATCTTGTATTGAGCAGGAGCCTGATCCAGAGGCCATTGCCCAGATGAAGGAGATGATCTACAGAGCAGCAGCTTTCAGGCCAGTGAATTTGGGGGTGGAAGTAGTGGAGAAGCCAAAGAGGAAGAATGTGAGAATTTCAACTGACCCACAAACTGTGGCAGCAAGACAGAGGAGAGAGAGAATCAGTGAGAGAATTAGGGTTCTACAGAGGCTGGTTCCTGGTGGGAACAAAATGGATACAGCATCAATGCTTGATGAAGCTGCAAATTATCTCAAGTTTTTGAAGTCTCAGATCAAAGCACTGGAGAATCTTGGGCAAAAGCTTGAGTCTTTGAATTGCCCTCCAACTAGTATAGCTTTCTCTTTCAACCCATCTTTTCCCATACAAACAACTTCATCCCATGACAGTTTCTCCCTCCAAAACCCCAACCATATTAACCAATTCCCCCAAAAC | 1161 | 43.84 | MDDLNWDGYGSRVAMNTTSSPWFWSNYQPGLGEKFVSSNSNSNFCNSVQELPMIKEAEDPLFSKTGEALPMVMSHPLTNFTTTREVGVIDLEPHIPTGVSAAAPATCSLDSLDCLLSATTNSNTDTSVEDDGISMILTDYTNLWNFGGNANAVCSSRESGKNGSNSSKRSHDQTQFKAGDYSVFSNDIIIQSDSTSDSGGFKIISDQNLAKQKKPRSEKPPTSSNINFQQTCSSGSSCIEQEPDPEAIAQMKEMIYRAAAFRPVNLGVEVVEKPKRKNVRISTDPQTVAARQRRERISERIRVLQRLVPGGNKMDTASMLDEAANYLKFLKSQIKALENLGQKLESLNCPPTSIAFSFNPSFPIQTTSSHDSFSLQNPNHINQFPQN | 387 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 2081253 | 2082413 | + | MC09g0234 | Mch9g0278 | 697160 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch9g0278 | 387 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 112 | 383 | IPR045843 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch9g0278 | 387 | Pfam | Helix-loop-helix DNA-binding domain | 290 | 331 | IPR011598 | GO:0046983(InterPro) | |
Mch9g0278 | 387 | SMART | finulus | 287 | 336 | IPR011598 | GO:0046983(InterPro) | |
Mch9g0278 | 387 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 286 | 346 | IPR036638 | GO:0046983(InterPro) | |
Mch9g0278 | 387 | MobiDBLite | consensus disorder prediction | 206 | 240 | - | - | |
Mch9g0278 | 387 | Coils | Coil | 320 | 347 | - | - | |
Mch9g0278 | 387 | MobiDBLite | consensus disorder prediction | 155 | 174 | - | - | |
Mch9g0278 | 387 | Gene3D | - | 286 | 349 | IPR036638 | GO:0046983(InterPro) | |
Mch9g0278 | 387 | MobiDBLite | consensus disorder prediction | 219 | 240 | - | - | |
Mch9g0278 | 387 | FunFam | BHLH transcription factor | 284 | 348 | - | - | |
Mch9g0278 | 387 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 281 | 330 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch2g1357 | Mch-Chr2:9653342 | Mch9g0278 | Mch-Chr9:2081253 | 2.24E-33 | dispersed | |
Mch8g0679 | Mch-Chr8:4848301 | Mch9g0278 | Mch-Chr9:2081253 | 1.95E-34 | dispersed | |
Mch9g0278 | Mch-Chr9:2081253 | Mch9g0913 | Mch-Chr9:7244657 | 6.68E-13 | dispersed | |
Mch3g0878 | Mch-Chr3:12745996 | Mch9g0278 | Mch-Chr9:2081253 | 1.68E-09 | transposed | |
Mch4g0213 | Mch-Chr4:1396936 | Mch9g0278 | Mch-Chr9:2081253 | 1.92E-09 | transposed | |
Mch11g0386 | Mch-Chr11:2416136 | Mch9g0278 | Mch-Chr9:2081253 | 2.15E-08 | wgd | |
Mch8g1236 | Mch-Chr8:8893080 | Mch9g0278 | Mch-Chr9:2081253 | 5.18E-46 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
43992 | PF00010 | HLH | 7.50E-06 | No_clan | Mch | TF |
Pathway information
