Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g0279 ATGCACTTTGCAGACATCCAAAACCTAACAACAATGGAGTACAGAGCCTTTAACGTCAATGTCAATGGATTCCTTTGGTATGGGCCTTTGAATCCTAAATATTTGTCAACTACCACACTGTTTGGCAGTATCAGCATGGCTAAAAAGGGAGGCACTTATATGTTCTCCTTCAATAAAACTGAAAACTCAACTCTTCCACCCATAATCAATGCCATTGAGATTTTTGTAGAACAACAATTCACACAGTTGCAAACAACTCAAACTGAAATTGATGCACTGCTGAACCTAAAATCAACATATAATGTGAAGAAAAACTGGCAAGGAGATCCATGTTACCCTCAAAAATACTTGTGGGATGGTCTTGATTGCAGTTATATTGATGAAAGACAACCGAGCATCATATCCCTGAACTTGTCGTGGAGTGGATTGGCAGGGGAAATTTCTTCCGGTATATCAAATCTCACAATGATACAATACCTGGATTTGTCCAACAATCGTTTAAATGGCACAGTTCCAGATTTTCTAGCTAAACTGCCATCCTTGAGGGTTCTAAACCTGGAGAACAATAATCTCTCGGGGACAATTCCACCAGAACTGATCCAAGGATCGAGAAATAGAAACTTTTCGTTGAGAGCTGGAGGCAACCCATTTCTTTGCCTATCAGAATCCTGCCCTAGAAAGGAGGAGAAGTATGTAGTTCCATTGACAGCATCACTTGGTGGAGTTATATTAGTATTGTTAATCGGAGGCGTGATCTTTCAGATTCTAAGAAGACAGAAGAAGAAAGCTTATGCAGGGAATCAGATCTCTGGGAGTGAAAAGAGTGGCAGGACGTTAGTAGTGCCCGAGAAAAAACGGTTTACCTACTCGGAAATTTTAAGCATCACAAACAATTTTGAGAGGGTTATAGGGAAGGGAGGATTTGGAACAGTTTATCATGGTTGCTTGTATAGTATCCAAGTTTCTGTGAAAATGCTGTCCCCTGCATCAGTTCAAGGCTACAAGCAATTTCAGGAAGAGGCACAATGGCTTACTAGAGTTCACCATGGAAACTTAACTTCCATACTTGGATATTGTGATGAAGACACTCACCTAGGACTGGTTTATGAACACATGGAAAATGGAAACTTAGCTGATCATCTATCAGAAAAAGGCAACCATATCTTGAACTGGAAAGAGAGACTGAGAATCGCTCAGGATGCAGCACAAGGGTTAGAGCACCTTCATTTTGGCTGTAAGCCACCAATTATTCACAGAGATGTTAAGTCTACAAACATCTTACTAGATGGAAACTTCCATGCCAAATTAGCTGATTTTGGGATGTCAAAAACCTTCCAATTAGGAGACGGAGCTCAAGCATCTGCAGCTGTTGGCACCCCAGGATACCTTGACCCAGAGTACACTGTGACAAACAAGTTAAGTGAGAAGAGTGACGTTTATAGTTTTGGGGTGATTTTACTTGAAATTGTCACTGGTCAGCCAGCACTAACAAGAAATCAGGACAAGACCCATGTCATTGAATGGGTTAGTTCAGTGTTTAAAGAAGGGGAAATCAATAAAATAGTGGACCCAAAATTAGGATTGGACATTGGTAACAGTTCTATTTGGAAATTTATTGATTTGGCAATGACCTGTGTGTCTTCATCTTCAACCACAAGGCCAACCATGAACCAGGTAGTGATGGAACTGAAGGAATGTTCGGCTGTGTTGGAGAATTCCCAGGAAAACAACCGACGAATCAGTTCGAGTCTTGAATGTGTCCATCTGGCTTCATTCATCACGAATTTTCAAGAAAGGTAG 1800 40.83 MHFADIQNLTTMEYRAFNVNVNGFLWYGPLNPKYLSTTTLFGSISMAKKGGTYMFSFNKTENSTLPPIINAIEIFVEQQFTQLQTTQTEIDALLNLKSTYNVKKNWQGDPCYPQKYLWDGLDCSYIDERQPSIISLNLSWSGLAGEISSGISNLTMIQYLDLSNNRLNGTVPDFLAKLPSLRVLNLENNNLSGTIPPELIQGSRNRNFSLRAGGNPFLCLSESCPRKEEKYVVPLTASLGGVILVLLIGGVIFQILRRQKKKAYAGNQISGSEKSGRTLVVPEKKRFTYSEILSITNNFERVIGKGGFGTVYHGCLYSIQVSVKMLSPASVQGYKQFQEEAQWLTRVHHGNLTSILGYCDEDTHLGLVYEHMENGNLADHLSEKGNHILNWKERLRIAQDAAQGLEHLHFGCKPPIIHRDVKSTNILLDGNFHAKLADFGMSKTFQLGDGAQASAAVGTPGYLDPEYTVTNKLSEKSDVYSFGVILLEIVTGQPALTRNQDKTHVIEWVSSVFKEGEINKIVDPKLGLDIGNSSIWKFIDLAMTCVSSSSTTRPTMNQVVMELKECSAVLENSQENNRRISSSLECVHLASFITNFQER 599
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2087901 2093486 - MC09g_new0045 Mch9g0279 697161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g0279 599 Gene3D Ribonuclease Inhibitor 88 210 IPR032675 -
Mch9g0279 599 Gene3D Transferase(Phosphotransferase) domain 1 372 588 - -
Mch9g0279 599 CDD STKc_IRAK 303 565 - -
Mch9g0279 599 ProSiteProfiles Protein kinase domain profile. 297 570 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch9g0279 599 PANTHER OS07G0107800 PROTEIN-RELATED 1 574 - -
Mch9g0279 599 Pfam Malectin-like domain 1 75 IPR024788 -
Mch9g0279 599 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 372 576 - -
Mch9g0279 599 SUPERFAMILY L domain-like 85 200 - -
Mch9g0279 599 CDD TM_EGFR-like 235 262 - -
Mch9g0279 599 FunFam Leucine-rich repeat receptor-like kinase 88 221 - -
Mch9g0279 599 SMART serkin_6 297 570 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch9g0279 599 Pfam Protein kinase domain 300 560 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch9g0279 599 SUPERFAMILY Protein kinase-like (PK-like) 277 563 IPR011009 -
Mch9g0279 599 Gene3D Phosphorylase Kinase; domain 1 284 371 - -
Mch9g0279 599 PRINTS Leucine-rich repeat signature 157 170 - -
Mch9g0279 599 PRINTS Leucine-rich repeat signature 178 191 - -
Mch9g0279 599 Pfam Leucine Rich repeats (2 copies) 157 196 IPR025875 -
Mch9g0279 599 ProSitePatterns Serine/Threonine protein kinases active-site signature. 416 428 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch9g0279 599 SMART LRR_typ_2 154 177 IPR003591 -
Mch9g0279 599 SMART LRR_typ_2 178 202 IPR003591 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch9g0279 Mch-Chr9:2087901 Mch9g0284 Mch-Chr9:2119528 6.72E-170 dispersed
Mch9g0279 Mch-Chr9:2087901 Mch9g0280 Mch-Chr9:2094773 4.01E-76 tandem
Mch8g1230 Mch-Chr8:8837390 Mch9g0279 Mch-Chr9:2087901 6.58E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77665 PF00069 Pkinase 1.00E-44 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g0279 - - - 0.0