Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g0298 ATGGGGAAGGCTACAAGATGGTTGAAGGGTCTATTGGGGATGAAAAAAGAGAAGGACCCATCTGGGATTTCGAATTCCACGGCGGTCGCCGGCGCCGGCGACAGAAAGGAGAAGAAAAGGTGGAGCTTTGCGAAGTCCGGCAGGGATTCCGGCCACCCAATTCAAGCCTCTCCTCTGCAGGACTCTGCTTGGTTGAGATCCTACATTTCTGATTCGGAGAAAGAGCAGAACAAGCACGCAATTGCGGTGGCCGCTGCCACCGCCGCCGCCGCAGACGCCGCCGTGGCGGCGGCTCAGGCGGCGGTCGCCGTCGTCAGACTTACAAGCCAGGGAAGAGGGTCTCTGTACATCACCGGAAGAGATAGATGGGCAGCTGTGAAGATTCAAACAGTATTCAGGGGCTTTTTGGCTAGAAAGGCCCTGAGAGCTCTTAAAGGGCTGGTTAAATTGCAGGCTGTGGTGAGGGGATTTCTTGTGAGGAAAAGAGCTGCTGCTACTCTTCACAGTATGCAGGCTCTTTTTCGAGCTCAAACTGCAGTTAGGACTCAAAGAGCTCGAAGATCTTTCAACAAAGAGAACAGGTTTATCCCTGAGATTCGGCCCCGAAAATCTGCGGAACGGTTTGATGAATCAAGAAGTGAATTCCATAGCAAGAGGTTGTCAGTAGCATCATCCTACGAAACCTGCATCAACTCATTGGATGAGAGCCCGAAAATTGTCGAAATCGACACCTACAGAACCCGATCGAGGTCCCGTAGGTTCATCTCCGCTGCATTGTCCGAATGCGGGGGAGATGATGTTCCACTCCAAACAATCTCTTCGCCATCGCCATGTCCGAATCGACCTCGTGTGCCCGATTGCCATAATGTTGTTCTTCGTGACTTCGAATGGTGCTTAATGGGCGACGACTGCAAGTTCCCCACAGCTCACAGCACACCCCGGCTATCGAATTCTTTCGCTGCCTCCGCCAACGTGCCAGTCACGCCGTCGAAGAGTGTGTGCGGGGACAGCTTCTTCCGACCGTACATGAACTACCCGAATTATATGGCGAACACGCAGTCGTTTAAGGCGAAATTGAGGTCTCAAAGCGCCCCAAAGCAGAGGCCAGAGCCAGGGTCCAAGAAGAAGCTCTCATTGAATGAAATAATGGCAGCAAGAAGCAGCTTAAGCAGTGTAAAAATGCAGAGACCAAGCAATCAAATGCTCCAAGAAGAAGAAGAAGAGGAAGAAGAAGAAGAATTTGGTTTTTGA 1251 51.64 MGKATRWLKGLLGMKKEKDPSGISNSTAVAGAGDRKEKKRWSFAKSGRDSGHPIQASPLQDSAWLRSYISDSEKEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSQGRGSLYITGRDRWAAVKIQTVFRGFLARKALRALKGLVKLQAVVRGFLVRKRAAATLHSMQALFRAQTAVRTQRARRSFNKENRFIPEIRPRKSAERFDESRSEFHSKRLSVASSYETCINSLDESPKIVEIDTYRTRSRSRRFISAALSECGGDDVPLQTISSPSPCPNRPRVPDCHNVVLRDFEWCLMGDDCKFPTAHSTPRLSNSFAASANVPVTPSKSVCGDSFFRPYMNYPNYMANTQSFKAKLRSQSAPKQRPEPGSKKKLSLNEIMAARSSLSSVKMQRPSNQMLQEEEEEEEEEEFGF 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2216351 2219513 - MC09g0241 Mch9g0298 697180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g0298 416 ProSiteProfiles IQ motif profile. 145 172 - -
Mch9g0298 416 PANTHER IQ-DOMAIN 5-RELATED 6 395 - -
Mch9g0298 416 Pfam Protein of unknown function (DUF4005) 313 397 IPR025064 -
Mch9g0298 416 MobiDBLite consensus disorder prediction 16 56 - -
Mch9g0298 416 MobiDBLite consensus disorder prediction 383 399 - -
Mch9g0298 416 Gene3D - 119 172 - -
Mch9g0298 416 Pfam IQ calmodulin-binding motif 148 162 IPR000048 GO:0005515(InterPro)
Mch9g0298 416 Pfam IQ calmodulin-binding motif 122 142 IPR000048 GO:0005515(InterPro)
Mch9g0298 416 SMART iq_5 120 142 IPR000048 GO:0005515(InterPro)
Mch9g0298 416 SMART iq_5 143 164 IPR000048 GO:0005515(InterPro)
Mch9g0298 416 ProSiteProfiles Zinc finger C3H1-type profile. 281 313 IPR000571 GO:0046872(InterPro)
Mch9g0298 416 MobiDBLite consensus disorder prediction 357 416 - -
Mch9g0298 416 MobiDBLite consensus disorder prediction 32 46 - -
Mch9g0298 416 ProSiteProfiles IQ motif profile. 121 149 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g0249 Mch-Chr3:3450578 Mch9g0298 Mch-Chr9:2216351 9.63E-11 dispersed
Mch6g2701 Mch-Chr6:28644893 Mch9g0298 Mch-Chr9:2216351 5.64E-22 dispersed
Mch9g0298 Mch-Chr9:2216351 Mch8g2930 Mch-Chr8:32041781 1.47E-07 dispersed
Mch6g0862 Mch-Chr6:5996478 Mch9g0298 Mch-Chr9:2216351 1.20E-108 wgd
Mch8g1216 Mch-Chr8:8718339 Mch9g0298 Mch-Chr9:2216351 1.11E-82 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g0298 - - - 0.0