Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g0310 ATGGCTATGTCCTGCAAGGATGGTAACAAACATGGTATCGACAACGGTAAATACGTTCGATACACACCGGAGCAGGTTGAAGCCCTTGAGCGGCTCTATCACGAATGTCCGAAACCCAGTTCCATTCGTCGCCAGCAGCTGATCAGAGAGTGCCCCATTCTCTCCAATATCGAGCCGAAGCAAATCAAAGTCTGGTTTCAGAATAGAAGATGTCGTGAAAAACAGAGGAAAGAGGCATCGCGGCTACAAGCTGTGAACAGGAAGCTTACGGCCATGAATAAGCTTTTAATGGAGGAGAATGATAGGCTGCAGAAGCAGGTTTCGCAGCTGGTGTATGAGAATGGCTATTTCCGCCAGCATACTCAAAGTACGACGCTTGGAGCTAAAGACACAAGTTGTGAACCGGTGGTAACTAGCGGTCAACACAATTTGACATCTCAGCATCCTCCGAGGGATGCTAGTCCTGCAGGACTTTTGTCCATCGCAGAAGAGACTTTAACAGAGTTTCTTTCAAAGGCCACTGGAACTGCCGTGGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCCCTGGTGTGGCTGCACGTGCCTGCGGCCTGGTGGGTCTAGAACCTACTAGAGTTGCTGAAATCCTCAAGGATCAGCCATCGTGGTTTCGCGATTGCCGAGCTGTGGATGTTCTAAATGTGCTGCCAACAGCAAATGGTGGAACCATTGAGCTGCTTTATATGCAGCTCTATGCGCCTACAACATTGGCGCCTGCACGGGACTTCTGGTTGTTGCGCTACACTTCTGTTTTGGAAGATGGTAGCCTTGTGATCTGTGTGAGATCACTTAAGAACACTCAGAATGGTCCAACCATGCCTCCAGTGCAGCATTTTGTTAGAGCAGAGATGCTGCCGAGTGGATATCTGATAAGACCATGTGAAGGAGGTGGTTCCATCATTCATATTGTTGATCATATGGATCTGGAGCCATGGAGTGTTCCAGAAGTATTGCGTCCATTGTATGAATCATCGACTGTTCTTGCCCAAAAAATGACTATGGCGGCTCTACGCCAATTGAGGCAGATAGCTCATGAAGTTTCACAGTCAAATGTAACAGGCTGGGGTAGACGTCCTGCAGCCTTACGTGCACTTGGTCAAAGGCTAACCCGGGGTTTCAATGAGGCACTTAATGGGTTTAATGACGAAGGGTGGTCTGTGATGGGAAATGATGGCATGGATGATGTAACTATTCTTGTAAATTCATCTCCTGACAAGTTAATGGGATTGAACATTTCATTTGCCAATGGATTTTCTGCCATCAGTAATGCAGTTTTATGTGCTAGAGCATCGATGCTGTTGCAGAATGTGCCTCCTGCAATTCTACTGAGGTTCCTGCGGGAGCACAGATCAGAATGGGCAGACAACAACATTGATGCTTATTCAGCTGCTGCTGTTAAGGTTGGCCCATGGAGCTTACCAGGGTCTAGAGTTGGAAGTTTTGGGAATCAAGTAATTCTTCCACTGGCTCACACCATTGAGCACGAAGAGGCAATGATAAAATTGGAAGGCGTTGGCCACACTCCTGAAGATGCAATGATGCCTAGGGAGATGTTTCTTCTGCAACTCTGCAGTGGAATGGATGAAAATGCCATTGGCACATGTGCTGAACTAATATTTGCTCCAATCGATGCCTCTTTTGCTGATGATGCTCCTCTTTTACCCTCAGGGTTTCGAATCATACCACTTGATTCTGGAAAGGAAGCATCCAGCCCAAATCGTACGCTCGACCTTGCATCTGCTCTTGAGATTGGGCCTGCTGGAAATAGAGCATCAAATGACTGTGCAAATTCTGGCTGTACACGGTCTGTAATGACAATTGCATTTGAGTTTGCATATGAGAGTCATATGCAAGAACATGTGGCATCTATGGCTAGGCAATATGTACGTAGTATTATATCATCGGTTCAAAGGGTTGCATTAGCTCTCTCACCTTCTCATTTAAGTTCACACGCTGGACTACGATCTCCACTTGGTACTCCTGAAGCACAAACACTTGCTCGTTGGATCTGCAACAGTTACAGGTGCTACTTGGGTGTGGAGCTATTAAAATCTGGAAATGAAGGGGGGGAGTTTGTCCTGAAAACTTTATGGCATCACTCCGACGCAATCATGTGCTGCTCTCTAAAGGCATTGCCAGTGTTTACCTTTGCAAACCAGGCAGGCCTCGACATGCTTGAAACCACCTTAGTCGCGCTACAAGACATAACTTTGGAAAAGATATTCGATGACCATGGAAAAAAGACGCTCTGCTCCGAATTCCCCCAGATAATGCAACAGGGATTTGCTTGTCTTCAAGGAGGTATATGCCTATCGAGCATGGGTCGACCTGTGTCGTACGAAAGAGCTGTGGCTTGGAAGGTACTGAACGAAGAGGAAAACGCACACTGCATCTGCTTTATGTTTGTGAACTGGTCTTTTGTCTGA 2508 46.85 MAMSCKDGNKHGIDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQSTTLGAKDTSCEPVVTSGQHNLTSQHPPRDASPAGLLSIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPTRVAEILKDQPSWFRDCRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVICVRSLKNTQNGPTMPPVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKMTMAALRQLRQIAHEVSQSNVTGWGRRPAALRALGQRLTRGFNEALNGFNDEGWSVMGNDGMDDVTILVNSSPDKLMGLNISFANGFSAISNAVLCARASMLLQNVPPAILLRFLREHRSEWADNNIDAYSAAAVKVGPWSLPGSRVGSFGNQVILPLAHTIEHEEAMIKLEGVGHTPEDAMMPREMFLLQLCSGMDENAIGTCAELIFAPIDASFADDAPLLPSGFRIIPLDSGKEASSPNRTLDLASALEIGPAGNRASNDCANSGCTRSVMTIAFEFAYESHMQEHVASMARQYVRSIISSVQRVALALSPSHLSSHAGLRSPLGTPEAQTLARWICNSYRCYLGVELLKSGNEGGEFVLKTLWHHSDAIMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGKKTLCSEFPQIMQQGFACLQGGICLSSMGRPVSYERAVAWKVLNEEENAHCICFMFVNWSFV 835
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2330285 2338489 - MC09g0252 Mch9g0310 697192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g0310 835 SMART HOX_1 14 80 IPR001356 GO:0003677(InterPro)
Mch9g0310 835 SMART START_1 160 370 IPR002913 GO:0008289(InterPro)
Mch9g0310 835 Coils Coil 72 113 - -
Mch9g0310 835 CDD homeodomain 17 77 IPR001356 GO:0003677(InterPro)
Mch9g0310 835 MobiDBLite consensus disorder prediction 128 154 - -
Mch9g0310 835 Pfam START domain 161 369 IPR002913 GO:0008289(InterPro)
Mch9g0310 835 Gene3D - 10 83 - -
Mch9g0310 835 Gene3D - 195 379 IPR023393 -
Mch9g0310 835 Pfam MEKHLA domain 692 834 IPR013978 -
Mch9g0310 835 ProSiteProfiles START domain profile. 151 379 IPR002913 GO:0008289(InterPro)
Mch9g0310 835 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 10 835 IPR044830 GO:0003700(InterPro)
Mch9g0310 835 SUPERFAMILY Homeodomain-like 16 80 IPR009057 -
Mch9g0310 835 CDD bZIP 69 108 - -
Mch9g0310 835 CDD START_ArGLABRA2_like 155 371 - -
Mch9g0310 835 SUPERFAMILY Bet v1-like 160 371 - -
Mch9g0310 835 FunFam homeobox-leucine zipper protein ATHB-15 196 377 - -
Mch9g0310 835 ProSiteProfiles 'Homeobox' domain profile. 12 76 IPR001356 GO:0003677(InterPro)
Mch9g0310 835 MobiDBLite consensus disorder prediction 128 150 - -
Mch9g0310 835 FunFam Homeobox-leucine zipper protein REVOLUTA 17 72 - -
Mch9g0310 835 Pfam Homeodomain 17 75 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0764 Mch-Chr11:5156299 Mch9g0310 Mch-Chr9:2330285 0 dispersed
Mch3g0939 Mch-Chr3:13279452 Mch9g0310 Mch-Chr9:2330285 0 dispersed
Mch9g0310 Mch-Chr9:2330285 Mch1g2089 Mch-Chr1:20268520 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43994 PF01852 START 1.00E-53 CL0209 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g0310 K09338 - csv:101213106 1655.96