Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch9g0319 | ATGGCAAAGCCAAAGAATTCAGACCCCCAAACCATTCCGGCGGTTTCCGGCGCCGGGGCGGTTCAACCGGACCGGCCGGCTGCGAAGAGAGCCAGGGATTGCAACAGACATCCGCTCTTCAGAGGCGTTCGCAAGAGAAGCTGGGGAAAATGGGTGTCGGAAATCCGGCAGCCGCGGAAGAAGTCCCGCATTTGGCTCGGCACGTTCCCGACACCCGAAATGGCGGCGCGTGCGCACGATGCGGCCGCGCTTAGCATCAAAGGCGACTCGGCCATCCTCAATTACCCCGAACTCGCCCAGTTCTTGCCCCGCCCGGCCTCGCTCACGCCTCACGACATTCAAGCCGCCGCCGCCAAAGCTGCCGCCATGGTCAATTTCAAATCCACCTCATCGCCGTCGCCGTCGGAGGAGGAGGAGCTGAGTGAAATCGTCGAGTTACCCAATATAGAAGACGATTTTGCCACTGAGTCACAGAGCGAGTTTGCACTGGTCACTGAGTCATGGGAGTGGTGGGAGTGCGTCGCAATGCCGTTGGAGCTGGCGGCGGAATTCGGCGGGGATTTTTATTCCAACCAGACGACGGCGGAGGAAAATTTATTCCCGGGTTGCTTTTACGGCGCTCTGTGGGAT | 630 | 59.68 | MAKPKNSDPQTIPAVSGAGAVQPDRPAAKRARDCNRHPLFRGVRKRSWGKWVSEIRQPRKKSRIWLGTFPTPEMAARAHDAAALSIKGDSAILNYPELAQFLPRPASLTPHDIQAAAAKAAAMVNFKSTSSPSPSEEEELSEIVELPNIEDDFATESQSEFALVTESWEWWECVAMPLELAAEFGGDFYSNQTTAEENLFPGCFYGALWD | 210 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 2386528 | 2387157 | - | MC09g0261 | Mch9g0319 | 697201 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch9g0319 | 210 | ProSiteProfiles | AP2/ERF domain profile. | 39 | 96 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch9g0319 | 210 | FunFam | Ethylene-responsive transcription factor 2 | 38 | 97 | - | - | |
Mch9g0319 | 210 | SMART | rav1_2 | 39 | 102 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch9g0319 | 210 | Gene3D | AP2/ERF domain | 39 | 97 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch9g0319 | 210 | PRINTS | Ethylene responsive element binding protein signature | 62 | 78 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch9g0319 | 210 | PRINTS | Ethylene responsive element binding protein signature | 40 | 51 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch9g0319 | 210 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Mch9g0319 | 210 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 25 | 148 | IPR051032 | - | |
Mch9g0319 | 210 | SUPERFAMILY | DNA-binding domain | 39 | 96 | IPR016177 | GO:0003677(InterPro) | |
Mch9g0319 | 210 | Pfam | AP2 domain | 38 | 88 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch9g0319 | 210 | CDD | AP2 | 38 | 98 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch6g2708 | Mch-Chr6:28725137 | Mch9g0319 | Mch-Chr9:2386528 | 3.41E-30 | dispersed | |
Mch8g3167 | Mch-Chr8:33895417 | Mch9g0319 | Mch-Chr9:2386528 | 5.01E-48 | dispersed | |
Mch9g0319 | Mch-Chr9:2386528 | Mch1g1211 | Mch-Chr1:14466434 | 3.48E-20 | dispersed | |
Mch11g1719 | Mch-Chr11:16157209 | Mch9g0319 | Mch-Chr9:2386528 | 2.56E-31 | transposed | |
Mch5g0039 | Mch-Chr5:325653 | Mch9g0319 | Mch-Chr9:2386528 | 5.56E-40 | transposed | |
Mch6g0844 | Mch-Chr6:5837127 | Mch9g0319 | Mch-Chr9:2386528 | 1.32E-50 | wgd | |
Mch8g1202 | Mch-Chr8:8570775 | Mch9g0319 | Mch-Chr9:2386528 | 1.08E-52 | wgd | |
Mch8g0335 | Mch-Chr8:2362414 | Mch9g0319 | Mch-Chr9:2386528 | 2.02E-47 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
43996 | PF00847 | AP2 | 2.90E-14 | CL0081 | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch9g0319 | K09286 | - | csv:101217361 | 296.975 |