Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g0319 ATGGCAAAGCCAAAGAATTCAGACCCCCAAACCATTCCGGCGGTTTCCGGCGCCGGGGCGGTTCAACCGGACCGGCCGGCTGCGAAGAGAGCCAGGGATTGCAACAGACATCCGCTCTTCAGAGGCGTTCGCAAGAGAAGCTGGGGAAAATGGGTGTCGGAAATCCGGCAGCCGCGGAAGAAGTCCCGCATTTGGCTCGGCACGTTCCCGACACCCGAAATGGCGGCGCGTGCGCACGATGCGGCCGCGCTTAGCATCAAAGGCGACTCGGCCATCCTCAATTACCCCGAACTCGCCCAGTTCTTGCCCCGCCCGGCCTCGCTCACGCCTCACGACATTCAAGCCGCCGCCGCCAAAGCTGCCGCCATGGTCAATTTCAAATCCACCTCATCGCCGTCGCCGTCGGAGGAGGAGGAGCTGAGTGAAATCGTCGAGTTACCCAATATAGAAGACGATTTTGCCACTGAGTCACAGAGCGAGTTTGCACTGGTCACTGAGTCATGGGAGTGGTGGGAGTGCGTCGCAATGCCGTTGGAGCTGGCGGCGGAATTCGGCGGGGATTTTTATTCCAACCAGACGACGGCGGAGGAAAATTTATTCCCGGGTTGCTTTTACGGCGCTCTGTGGGAT 630 59.68 MAKPKNSDPQTIPAVSGAGAVQPDRPAAKRARDCNRHPLFRGVRKRSWGKWVSEIRQPRKKSRIWLGTFPTPEMAARAHDAAALSIKGDSAILNYPELAQFLPRPASLTPHDIQAAAAKAAAMVNFKSTSSPSPSEEEELSEIVELPNIEDDFATESQSEFALVTESWEWWECVAMPLELAAEFGGDFYSNQTTAEENLFPGCFYGALWD 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2386528 2387157 - MC09g0261 Mch9g0319 697201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g0319 210 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch9g0319 210 FunFam Ethylene-responsive transcription factor 2 38 97 - -
Mch9g0319 210 SMART rav1_2 39 102 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch9g0319 210 Gene3D AP2/ERF domain 39 97 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch9g0319 210 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch9g0319 210 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch9g0319 210 MobiDBLite consensus disorder prediction 1 32 - -
Mch9g0319 210 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 25 148 IPR051032 -
Mch9g0319 210 SUPERFAMILY DNA-binding domain 39 96 IPR016177 GO:0003677(InterPro)
Mch9g0319 210 Pfam AP2 domain 38 88 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch9g0319 210 CDD AP2 38 98 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g2708 Mch-Chr6:28725137 Mch9g0319 Mch-Chr9:2386528 3.41E-30 dispersed
Mch8g3167 Mch-Chr8:33895417 Mch9g0319 Mch-Chr9:2386528 5.01E-48 dispersed
Mch9g0319 Mch-Chr9:2386528 Mch1g1211 Mch-Chr1:14466434 3.48E-20 dispersed
Mch11g1719 Mch-Chr11:16157209 Mch9g0319 Mch-Chr9:2386528 2.56E-31 transposed
Mch5g0039 Mch-Chr5:325653 Mch9g0319 Mch-Chr9:2386528 5.56E-40 transposed
Mch6g0844 Mch-Chr6:5837127 Mch9g0319 Mch-Chr9:2386528 1.32E-50 wgd
Mch8g1202 Mch-Chr8:8570775 Mch9g0319 Mch-Chr9:2386528 1.08E-52 wgd
Mch8g0335 Mch-Chr8:2362414 Mch9g0319 Mch-Chr9:2386528 2.02E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43996 PF00847 AP2 2.90E-14 CL0081 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g0319 K09286 - csv:101217361 296.975