Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch9g0333 | ATGGCCGTAGTCATGTCCGGCAACCACCCGCCGCGCCGTCTCAACAACGCTCCCTCCTCCCCGGCCCTCTCTCTCACCCTCGCCGGCGTTTTCGGCAATGCGGCGGCGGAGGACCTGGAGGTGGACGCGCCGGCGAGGAGAGACGACAGCTGCAGCGACAACTCCGAGCCGGCGGGATCCAGGTCGGCGGAGGATTTGGGAGCCGACCAGGACGATGAAGATGAAGACAAACAGGGGAATAGAAAAAAGCGAAAGAATCGACACACTTCTGAACAAATTAGAGAAATGGAGATGTTGTTTAAAGAATCGCCACATCCAGATGAGAAGCAGAGGCTGCAACTGAGCGAGAAACTTGGCCTTTCTTCTAAGCAAATCAAGTTCTGGTTCCAGAATCGAAGAACTCAGATCAAGGCTATTCACGAGCGCCATGAGAACGCGTTGTTGAAAGGAGAAATGGAGAAAATGCGAGACGAAAACCAGGCGATGAGGGAGATTATCAGCAAAGGTTCTTGCCCTAAATGTGGTTCTTCTTCGGCTAATTCCTCTGCCGTTTCGAGGGAAACGATTTTCACTACTATTTCCGAGCAACAACAGCTAAGAACAGAGATCACTCGACTCAAAGCCGAGGTGGAGACATTGCGAGTAGCTCTTGCGAAGTACGCCCCGCCGGGGACATGTACGTCACGGTCGACGGAGAACGAGGAGGGGATATTGGAGAGGAGGAGAAGTTTGGAGCAATCGAAAACCATTTTCGGGCTGGAGAAGGCTAGGGTTATGGAGATAGCGAAGCGAGCGACGGATGAGCTCGTGAAAATGGCGGATTCCGGTGAGCCCCTTTGGGTACGAAGCGTTGAAACCGGACGCGAGCTACTAAATTACGACGTGTACATGAAAGAGTTCGCCGCCGACAACGAGCGGCCGAAGAGAGAAATCGAAGCGTCGAGGGAATCGGGCGTCGTCTTCGTCGATCTTCACCGATTGGTTCAGAGCTTCATGGATGTGGTTCAATGGAAGGAAATGTTTCCATCCATAATCTCGAAGGCCACGACCATGGAGGTCGTCTCCAATGGCGACGGAGCCGCCAGAAATGGCGCAGTTCAACTGATGTTTGCAGAGCTCCAAATGCTGACTCCCGCCCTTCCCTCAAGAGAAGTGTATTTCATCCGAAGCTGCACGCAAGTTAGCCCAGACAAGTGGGTGGTGGCAGATGTCTCTGTGGATAAAGTTGGAGACGGCATCGACTCATCCTCCTCCGTCTCTAGGAAACGCCCCTCTGGTTGCATCATTCAGGACACCTCCGATGGCCATTGTAAGATAACATGGGTGGAGCACTGGGAATGCCAGAAAATGGGACTCCGCACAATATATCGAACCATTATCAACAGCGGTTTGATATTCGGGGCAAAGCATTGGATGGCGTCACTGCAAACCCATTGTGAATGGCAGGTGTTCTTCATGGCCACCAACGTTCCCATGAAGGATTCTACTGGAATCACCACTCTTGGTGGGAGGAAAAGTGTTCTTCGGCTGGCTCAAAGAATGACGTCTAGTTTTTATCAAGCCTTTGGTGCATCCATCAGCCATTCATGGCCCAAGGTCCCCACCAAAACAGGGGAGAACATACGAGTTGCTTCCAGGAAAAACTTGAACGATCCACGAGAACCTCTGGGTTTGATCTTGTGTGCAGTTGCTTCTGTCTGGCTTCCTGTCTCTCCAAAAGTTTTGTTTGAATTCTTGATTGACGAAGCTCGCCGACTCGAGTGGGATGTTATGTCGGGTGGCGGTTCAGCCGAAACAATCACGAACTTTGCCAAAGGACAGAACCGTGGCAATGCCGTCACAATCCAAGCAATAAAATCAGATGAAACCAACGTGTGGGTTCTTCAAGATAGTCTAACAAACGAATATGAGTCGATGGTGGTGTATGCTCAGGTCGACATTACGAGCATGAAGTCGGTGATGGCGGGGTGTGACCCGGGCAACATCACGACTTTACCGACAGGCTTCTCGATCCTTCCGGACGGGCATCAGTCGAGGCCAATGGTTATCAGTTCAAGCAAAGAGGAAAAGGGGGCAGAAGGAGGATCATTACTCACAATGGCATCCCAAATCCTAGCCAGCGCTTCTCAAACCGCCGAAATGACGGCACAATCTGTTGAGTATGTTAACAATGTTATATCACATACCTTAAAAAATATTAAAGCAAGCCTTCAAGGTGAGGATGAT | 2226 | 51.03 | MAVVMSGNHPPRRLNNAPSSPALSLTLAGVFGNAAAEDLEVDAPARRDDSCSDNSEPAGSRSAEDLGADQDDEDEDKQGNRKKRKNRHTSEQIREMEMLFKESPHPDEKQRLQLSEKLGLSSKQIKFWFQNRRTQIKAIHERHENALLKGEMEKMRDENQAMREIISKGSCPKCGSSSANSSAVSRETIFTTISEQQQLRTEITRLKAEVETLRVALAKYAPPGTCTSRSTENEEGILERRRSLEQSKTIFGLEKARVMEIAKRATDELVKMADSGEPLWVRSVETGRELLNYDVYMKEFAADNERPKREIEASRESGVVFVDLHRLVQSFMDVVQWKEMFPSIISKATTMEVVSNGDGAARNGAVQLMFAELQMLTPALPSREVYFIRSCTQVSPDKWVVADVSVDKVGDGIDSSSSVSRKRPSGCIIQDTSDGHCKITWVEHWECQKMGLRTIYRTIINSGLIFGAKHWMASLQTHCEWQVFFMATNVPMKDSTGITTLGGRKSVLRLAQRMTSSFYQAFGASISHSWPKVPTKTGENIRVASRKNLNDPREPLGLILCAVASVWLPVSPKVLFEFLIDEARRLEWDVMSGGGSAETITNFAKGQNRGNAVTIQAIKSDETNVWVLQDSLTNEYESMVVYAQVDITSMKSVMAGCDPGNITTLPTGFSILPDGHQSRPMVISSSKEEKGAEGGSLLTMASQILASASQTAEMTAQSVEYVNNVISHTLKNIKASLQGEDD | 742 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 2507278 | 2513027 | + | MC09g0275 | Mch9g0333 | 697215 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch9g0333 | 742 | CDD | homeodomain | 82 | 137 | IPR001356 | GO:0003677(InterPro) | |
Mch9g0333 | 742 | MobiDBLite | consensus disorder prediction | 39 | 92 | - | - | |
Mch9g0333 | 742 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 | 69 | 738 | IPR042160 | - | |
Mch9g0333 | 742 | ProSiteProfiles | 'Homeobox' domain profile. | 79 | 139 | IPR001356 | GO:0003677(InterPro) | |
Mch9g0333 | 742 | FunFam | Homeobox-leucine zipper protein HDG1 | 68 | 155 | - | - | |
Mch9g0333 | 742 | SUPERFAMILY | Bet v1-like | 253 | 480 | - | - | |
Mch9g0333 | 742 | SMART | START_1 | 260 | 481 | IPR002913 | GO:0008289(InterPro) | |
Mch9g0333 | 742 | Gene3D | - | 259 | 482 | IPR023393 | - | |
Mch9g0333 | 742 | CDD | START_ArGLABRA2_like | 255 | 480 | - | - | |
Mch9g0333 | 742 | SUPERFAMILY | Homeodomain-like | 71 | 138 | IPR009057 | - | |
Mch9g0333 | 742 | ProSiteProfiles | START domain profile. | 251 | 484 | IPR002913 | GO:0008289(InterPro) | |
Mch9g0333 | 742 | SMART | HOX_1 | 81 | 143 | IPR001356 | GO:0003677(InterPro) | |
Mch9g0333 | 742 | Coils | Coil | 145 | 165 | - | - | |
Mch9g0333 | 742 | Pfam | Homeodomain | 82 | 137 | IPR001356 | GO:0003677(InterPro) | |
Mch9g0333 | 742 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Mch9g0333 | 742 | Pfam | START domain | 260 | 480 | IPR002913 | GO:0008289(InterPro) | |
Mch9g0333 | 742 | MobiDBLite | consensus disorder prediction | 40 | 54 | - | - | |
Mch9g0333 | 742 | FunFam | Homeobox-leucine zipper protein GLABRA 2 | 260 | 480 | - | - | |
Mch9g0333 | 742 | Coils | Coil | 196 | 216 | - | - | |
Mch9g0333 | 742 | Gene3D | - | 68 | 150 | - | - | |
Mch9g0333 | 742 | SUPERFAMILY | Bet v1-like | 504 | 704 | - | - | |
Mch9g0333 | 742 | ProSitePatterns | 'Homeobox' domain signature. | 114 | 137 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch8g2240 | Mch-Chr8:25551823 | Mch9g0333 | Mch-Chr9:2507278 | 2.41E-119 | dispersed | |
Mch8g1180 | Mch-Chr8:8383741 | Mch9g0333 | Mch-Chr9:2507278 | 1.89E-253 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
43998 | PF01852 | START | 1.10E-50 | CL0209 | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch9g0333 | K09338 | - | csv:101218545 | 1097.03 |