Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g0333 ATGGCCGTAGTCATGTCCGGCAACCACCCGCCGCGCCGTCTCAACAACGCTCCCTCCTCCCCGGCCCTCTCTCTCACCCTCGCCGGCGTTTTCGGCAATGCGGCGGCGGAGGACCTGGAGGTGGACGCGCCGGCGAGGAGAGACGACAGCTGCAGCGACAACTCCGAGCCGGCGGGATCCAGGTCGGCGGAGGATTTGGGAGCCGACCAGGACGATGAAGATGAAGACAAACAGGGGAATAGAAAAAAGCGAAAGAATCGACACACTTCTGAACAAATTAGAGAAATGGAGATGTTGTTTAAAGAATCGCCACATCCAGATGAGAAGCAGAGGCTGCAACTGAGCGAGAAACTTGGCCTTTCTTCTAAGCAAATCAAGTTCTGGTTCCAGAATCGAAGAACTCAGATCAAGGCTATTCACGAGCGCCATGAGAACGCGTTGTTGAAAGGAGAAATGGAGAAAATGCGAGACGAAAACCAGGCGATGAGGGAGATTATCAGCAAAGGTTCTTGCCCTAAATGTGGTTCTTCTTCGGCTAATTCCTCTGCCGTTTCGAGGGAAACGATTTTCACTACTATTTCCGAGCAACAACAGCTAAGAACAGAGATCACTCGACTCAAAGCCGAGGTGGAGACATTGCGAGTAGCTCTTGCGAAGTACGCCCCGCCGGGGACATGTACGTCACGGTCGACGGAGAACGAGGAGGGGATATTGGAGAGGAGGAGAAGTTTGGAGCAATCGAAAACCATTTTCGGGCTGGAGAAGGCTAGGGTTATGGAGATAGCGAAGCGAGCGACGGATGAGCTCGTGAAAATGGCGGATTCCGGTGAGCCCCTTTGGGTACGAAGCGTTGAAACCGGACGCGAGCTACTAAATTACGACGTGTACATGAAAGAGTTCGCCGCCGACAACGAGCGGCCGAAGAGAGAAATCGAAGCGTCGAGGGAATCGGGCGTCGTCTTCGTCGATCTTCACCGATTGGTTCAGAGCTTCATGGATGTGGTTCAATGGAAGGAAATGTTTCCATCCATAATCTCGAAGGCCACGACCATGGAGGTCGTCTCCAATGGCGACGGAGCCGCCAGAAATGGCGCAGTTCAACTGATGTTTGCAGAGCTCCAAATGCTGACTCCCGCCCTTCCCTCAAGAGAAGTGTATTTCATCCGAAGCTGCACGCAAGTTAGCCCAGACAAGTGGGTGGTGGCAGATGTCTCTGTGGATAAAGTTGGAGACGGCATCGACTCATCCTCCTCCGTCTCTAGGAAACGCCCCTCTGGTTGCATCATTCAGGACACCTCCGATGGCCATTGTAAGATAACATGGGTGGAGCACTGGGAATGCCAGAAAATGGGACTCCGCACAATATATCGAACCATTATCAACAGCGGTTTGATATTCGGGGCAAAGCATTGGATGGCGTCACTGCAAACCCATTGTGAATGGCAGGTGTTCTTCATGGCCACCAACGTTCCCATGAAGGATTCTACTGGAATCACCACTCTTGGTGGGAGGAAAAGTGTTCTTCGGCTGGCTCAAAGAATGACGTCTAGTTTTTATCAAGCCTTTGGTGCATCCATCAGCCATTCATGGCCCAAGGTCCCCACCAAAACAGGGGAGAACATACGAGTTGCTTCCAGGAAAAACTTGAACGATCCACGAGAACCTCTGGGTTTGATCTTGTGTGCAGTTGCTTCTGTCTGGCTTCCTGTCTCTCCAAAAGTTTTGTTTGAATTCTTGATTGACGAAGCTCGCCGACTCGAGTGGGATGTTATGTCGGGTGGCGGTTCAGCCGAAACAATCACGAACTTTGCCAAAGGACAGAACCGTGGCAATGCCGTCACAATCCAAGCAATAAAATCAGATGAAACCAACGTGTGGGTTCTTCAAGATAGTCTAACAAACGAATATGAGTCGATGGTGGTGTATGCTCAGGTCGACATTACGAGCATGAAGTCGGTGATGGCGGGGTGTGACCCGGGCAACATCACGACTTTACCGACAGGCTTCTCGATCCTTCCGGACGGGCATCAGTCGAGGCCAATGGTTATCAGTTCAAGCAAAGAGGAAAAGGGGGCAGAAGGAGGATCATTACTCACAATGGCATCCCAAATCCTAGCCAGCGCTTCTCAAACCGCCGAAATGACGGCACAATCTGTTGAGTATGTTAACAATGTTATATCACATACCTTAAAAAATATTAAAGCAAGCCTTCAAGGTGAGGATGAT 2226 51.03 MAVVMSGNHPPRRLNNAPSSPALSLTLAGVFGNAAAEDLEVDAPARRDDSCSDNSEPAGSRSAEDLGADQDDEDEDKQGNRKKRKNRHTSEQIREMEMLFKESPHPDEKQRLQLSEKLGLSSKQIKFWFQNRRTQIKAIHERHENALLKGEMEKMRDENQAMREIISKGSCPKCGSSSANSSAVSRETIFTTISEQQQLRTEITRLKAEVETLRVALAKYAPPGTCTSRSTENEEGILERRRSLEQSKTIFGLEKARVMEIAKRATDELVKMADSGEPLWVRSVETGRELLNYDVYMKEFAADNERPKREIEASRESGVVFVDLHRLVQSFMDVVQWKEMFPSIISKATTMEVVSNGDGAARNGAVQLMFAELQMLTPALPSREVYFIRSCTQVSPDKWVVADVSVDKVGDGIDSSSSVSRKRPSGCIIQDTSDGHCKITWVEHWECQKMGLRTIYRTIINSGLIFGAKHWMASLQTHCEWQVFFMATNVPMKDSTGITTLGGRKSVLRLAQRMTSSFYQAFGASISHSWPKVPTKTGENIRVASRKNLNDPREPLGLILCAVASVWLPVSPKVLFEFLIDEARRLEWDVMSGGGSAETITNFAKGQNRGNAVTIQAIKSDETNVWVLQDSLTNEYESMVVYAQVDITSMKSVMAGCDPGNITTLPTGFSILPDGHQSRPMVISSSKEEKGAEGGSLLTMASQILASASQTAEMTAQSVEYVNNVISHTLKNIKASLQGEDD 742
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2507278 2513027 + MC09g0275 Mch9g0333 697215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g0333 742 CDD homeodomain 82 137 IPR001356 GO:0003677(InterPro)
Mch9g0333 742 MobiDBLite consensus disorder prediction 39 92 - -
Mch9g0333 742 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 69 738 IPR042160 -
Mch9g0333 742 ProSiteProfiles 'Homeobox' domain profile. 79 139 IPR001356 GO:0003677(InterPro)
Mch9g0333 742 FunFam Homeobox-leucine zipper protein HDG1 68 155 - -
Mch9g0333 742 SUPERFAMILY Bet v1-like 253 480 - -
Mch9g0333 742 SMART START_1 260 481 IPR002913 GO:0008289(InterPro)
Mch9g0333 742 Gene3D - 259 482 IPR023393 -
Mch9g0333 742 CDD START_ArGLABRA2_like 255 480 - -
Mch9g0333 742 SUPERFAMILY Homeodomain-like 71 138 IPR009057 -
Mch9g0333 742 ProSiteProfiles START domain profile. 251 484 IPR002913 GO:0008289(InterPro)
Mch9g0333 742 SMART HOX_1 81 143 IPR001356 GO:0003677(InterPro)
Mch9g0333 742 Coils Coil 145 165 - -
Mch9g0333 742 Pfam Homeodomain 82 137 IPR001356 GO:0003677(InterPro)
Mch9g0333 742 MobiDBLite consensus disorder prediction 1 23 - -
Mch9g0333 742 Pfam START domain 260 480 IPR002913 GO:0008289(InterPro)
Mch9g0333 742 MobiDBLite consensus disorder prediction 40 54 - -
Mch9g0333 742 FunFam Homeobox-leucine zipper protein GLABRA 2 260 480 - -
Mch9g0333 742 Coils Coil 196 216 - -
Mch9g0333 742 Gene3D - 68 150 - -
Mch9g0333 742 SUPERFAMILY Bet v1-like 504 704 - -
Mch9g0333 742 ProSitePatterns 'Homeobox' domain signature. 114 137 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g2240 Mch-Chr8:25551823 Mch9g0333 Mch-Chr9:2507278 2.41E-119 dispersed
Mch8g1180 Mch-Chr8:8383741 Mch9g0333 Mch-Chr9:2507278 1.89E-253 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43998 PF01852 START 1.10E-50 CL0209 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g0333 K09338 - csv:101218545 1097.03