Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch9g0396 | GACATAAAGAACTCCGAGTTGCAGTTTTTTAGCTTTGAAAGTATAGTTTCTGCAACAAATAGCTTCTCTGACAAATGCAAGCTCGGAGAAGGTGGTTTTGGACCAGTTTATAAGGCAAGTTTGGGTGATGGCCAAGAAGTAGCCATTAAGAGATTGTCAAAGAATTCTGGACAAGGATTGGAGGAGTTCAAGAATGAAGCCATGTTGATTGCCAAACTGCAACACACAAATCTGGTTAGGCTTATTGGTTGCTGCATTTATAAAGAAGAGAGGTTGTTGGTATATGAATACATGCCCAACAACAGCCTTGACTCATTCCTCTTTGATCCGGAAAGAAAGCTAATACTAAGTTGGGAAAAACGCTTGCACATAATCCAAGGGATAATTCAAGGACTACTCTACCTTCACAACTACTCAAGACTACGAATAATTCATCGAGATTTAAAAGTTAGCAACATCTTGCTCGATGATGAGATGAATGCAAAAATATCAGATTTCGGCATGGTCAGAATCTTTAAGCCTATGGAGCATGAAGCAAACACAAGCCGGATTGTTGGTACATATGGTTATATATCACCCGAATATGCAATGGAGGGTATTTTTTCGATAAAATCAGACGTTTACAGTTTCGGGGTGTTGTTACTGGAGATCGTAACAGGGCAAAAGAACTACCACAATTATGACGTGGAACAACCCGTCAATTTCATAGGATACGCATGGGAGCTGTGGGTGAATGGCAGAGGAGAAGAATTGATTGATTCGACTTTGTGCAGCTCCGATCAAAAAGCAGAAGCTCTAAGATGCATACACATCAGTCTTCTGTGCGTCCAACAAATACCAGCAGACAGACCCACCATGCTCGATGTTTATTTCATGATTCACAACCATTCTGCTCAACTTTCATTGCCAAAACAGCCTGCATTTTTCATTCCCAAAAGCTCACAATTAGAGGATGGCGTTGAGCTCAGACCGCAATCCGCAACACAAATCTGTTCCTTCAACGACATGTCGGTCTCGGTGATGGTTGCTAGATGA | 1035 | 41.45 | DIKNSELQFFSFESIVSATNSFSDKCKLGEGGFGPVYKASLGDGQEVAIKRLSKNSGQGLEEFKNEAMLIAKLQHTNLVRLIGCCIYKEERLLVYEYMPNNSLDSFLFDPERKLILSWEKRLHIIQGIIQGLLYLHNYSRLRIIHRDLKVSNILLDDEMNAKISDFGMVRIFKPMEHEANTSRIVGTYGYISPEYAMEGIFSIKSDVYSFGVLLLEIVTGQKNYHNYDVEQPVNFIGYAWELWVNGRGEELIDSTLCSSDQKAEALRCIHISLLCVQQIPADRPTMLDVYFMIHNHSAQLSLPKQPAFFIPKSSQLEDGVELRPQSATQICSFNDMSVSVMVAR | 344 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 2973891 | 2975817 | - | MC09g0331 | Mch9g0396 | 697278 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch9g0396 | 344 | Gene3D | Transferase(Phosphotransferase) domain 1 | 98 | 305 | - | - | |
| Mch9g0396 | 344 | Gene3D | Phosphorylase Kinase; domain 1 | 1 | 97 | - | - | |
| Mch9g0396 | 344 | Pfam | Protein tyrosine and serine/threonine kinase | 26 | 236 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Mch9g0396 | 344 | FunFam | G-type lectin S-receptor-like serine/threonine-protein kinase | 98 | 301 | - | - | |
| Mch9g0396 | 344 | PANTHER | RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 | 7 | 309 | - | GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER) | |
| Mch9g0396 | 344 | SUPERFAMILY | Protein kinase-like (PK-like) | 6 | 315 | IPR011009 | - | |
| Mch9g0396 | 344 | CDD | STKc_IRAK | 28 | 293 | - | - | |
| Mch9g0396 | 344 | ProSiteProfiles | Protein kinase domain profile. | 22 | 308 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Mch9g0396 | 344 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 143 | 155 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Mch9g0396 | 344 | FunFam | receptor-like serine/threonine-protein kinase SD1-8 | 1 | 97 | - | - | |
| Mch9g0396 | 344 | SMART | serkin_6 | 22 | 291 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch9g0055 | Mch-Chr9:443241 | Mch9g0396 | Mch-Chr9:2973891 | 8.90E-106 | dispersed | |
| Mch9g0349 | Mch-Chr9:2581413 | Mch9g0396 | Mch-Chr9:2973891 | 1.02E-148 | dispersed | |
| Mch9g0351 | Mch-Chr9:2588671 | Mch9g0396 | Mch-Chr9:2973891 | 4.13E-116 | dispersed | |
| Mch9g0396 | Mch-Chr9:2973891 | Mch9g1305 | Mch-Chr9:15283138 | 1.01E-88 | dispersed | |
| Mch9g0396 | Mch-Chr9:2973891 | Mch4g0203 | Mch-Chr4:1342039 | 4.66E-124 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 77680 | PF07714 | PK_Tyr_Ser-Thr | 5.20E-48 | CL0016 | Mch | PK |
Pathway information