Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g0411 ATGACATATTTTCCAAGTTTAAGCAATAATCGAAGAGACGCCATGTTGGGAGACCAGAAGCTTGGTTCTTCTGGCCAAGAACAGCCTCTCTGTTCTGGAAATTTGATGATGTTCATGAATCAGGACCCTTCTTGCAGGGATTACTCAGAGATTTTTTCTGGGGTTTCTTCAAATTTTGTTGGAACTGTGGGAGAGAGAAGTGAAATGGCTTTTGTTCCACCGGTTGTGGGGATTTTGGATGACTCTAATTTCCAATGTCAGGGCGTTTCACTTAGCCTTTCCACCCACTCTCCTAATTCTGTTGCTTCCATGCCTTCATTTCCTCCCCAGTATCACCCCTCTGCTTTGGCTTCCTCGTTCATGAATACCCCTCCTTTGATCTTCGAGAAGAGGCCGAACCCGAAGGCTTGTGTATCTGGTGCGAAACACGGCGTGTATATGGCTGCGGGTTCGGCAAACTTGACGTTGGATTCGGTATACGTCGAGGCTGCACAGCAGTTGCTCGACGAAATGGTTAGCATCCGAGAAGCTTTGAAGGAGCTTAGGTCTAGGAAACTCAAAGGTTCCAATGGTTTGGGTGCTGATTGCTGCAGAGAGAATGATGGGGGATCTAATGATCCGGCTGGGGAGATGTTTTCCGATCCGAGGGAGTCGTCGATCGCCAATCCGTCCAGCGATCTATCGCCTGCCGAACGGCAGGACTTGAAGAACAGAAACTCAAAGCTTATGTCCTTGTTGGGTGAGGTTGATCGAAGATACAAGCAATATTACCAACAGTTGCAGTTTTTGGCATCGTCTTTCGACATGGTAGCAGGTCGTGGGGCTGCAGAGTTCTACACTGCGCTTGCGCACCGAACTATTTCGTGCCACTTCCGCCGCTTGCAGGATGCAATCAATTCACAGATTGAGGTCACCAAGAGAGCCTTGGGAGAGCATGATGCCTCACATCCTGGTCAAGAAGGCATTCCCCGTCTCCGCTTTGTCGACCAACAGCTCAGGCAACAGAGGGCCCTTCAGCAACTCGGTGTCACGCCACATAGTTGGAGGCCTCAACGGGGGCTTCCCGAAAGCTCTGTGTCGATTCTTCGCGCTTGGCTGTTCGAACACTTCCTCCATCCATATCCCAAGGATTCAGAGAAACTTAAACTAGCAAGACAGACTGGCTTGACTAGAAATCAGGTTGCAAATTGGTTCATAAATGCACGTGTTCGACTATGGAAACCGATGGTCGAGGAGATGTACAAAGAAGAATTCGGAAGAGATTCAAACTTAGACCTCAAATCCTCACCAGAAAATGCATCCAAAGCATCATGGAACACTTCACTTCTCGGAGACGAGTTGCACGACAACACGAAATGCAGCGAGCGAGTCGTATACCGCCCATGTTCCAACGACGACATGATCAGGTCCAGTAACTTCTCGGTCGGGGGAGACGTTTCGCTTGCTCTAGAGTTGAAGCACTGTGAAGGTGATGAATTTGGCATGTTTGGCAGTAACAATAGAATGGTTGGTTCTGTAGAGCTTGAGCCACAAGATTTTCCTTGCCTAGAGCCAGAAAGGCCTCATCAATGCAGGCTCACCAGTTCAAATATGTTGCATGATTTTGTAGTTTAA 1614 48.45 MTYFPSLSNNRRDAMLGDQKLGSSGQEQPLCSGNLMMFMNQDPSCRDYSEIFSGVSSNFVGTVGERSEMAFVPPVVGILDDSNFQCQGVSLSLSTHSPNSVASMPSFPPQYHPSALASSFMNTPPLIFEKRPNPKACVSGAKHGVYMAAGSANLTLDSVYVEAAQQLLDEMVSIREALKELRSRKLKGSNGLGADCCRENDGGSNDPAGEMFSDPRESSIANPSSDLSPAERQDLKNRNSKLMSLLGEVDRRYKQYYQQLQFLASSFDMVAGRGAAEFYTALAHRTISCHFRRLQDAINSQIEVTKRALGEHDASHPGQEGIPRLRFVDQQLRQQRALQQLGVTPHSWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKLKLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGRDSNLDLKSSPENASKASWNTSLLGDELHDNTKCSERVVYRPCSNDDMIRSSNFSVGGDVSLALELKHCEGDEFGMFGSNNRMVGSVELEPQDFPCLEPERPHQCRLTSSNMLHDFVV 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3053525 3056788 + MC09g0346 Mch9g0411 697293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g0411 537 SMART HOX_1 348 412 IPR001356 GO:0003677(InterPro)
Mch9g0411 537 SMART prehox3 149 300 IPR006563 -
Mch9g0411 537 MobiDBLite consensus disorder prediction 192 234 - -
Mch9g0411 537 CDD homeodomain 348 409 IPR001356 GO:0003677(InterPro)
Mch9g0411 537 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 119 438 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Mch9g0411 537 SUPERFAMILY Homeodomain-like 349 415 IPR009057 -
Mch9g0411 537 Pfam Associated with HOX 157 298 IPR006563 -
Mch9g0411 537 Pfam Homeobox KN domain 365 404 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Mch9g0411 537 Coils Coil 161 184 - -
Mch9g0411 537 Gene3D - 345 423 - -
Mch9g0411 537 ProSiteProfiles 'Homeobox' domain profile. 345 408 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g1082 Mch-Chr2:7309966 Mch9g0411 Mch-Chr9:3053525 3.22E-93 dispersed
Mch6g2413 Mch-Chr6:26062387 Mch9g0411 Mch-Chr9:3053525 2.68E-57 dispersed
Mch8g0579 Mch-Chr8:4123414 Mch9g0411 Mch-Chr9:3053525 1.29E-33 dispersed
Mch9g0411 Mch-Chr9:3053525 Mch5g1540 Mch-Chr5:16429301 4.85E-73 transposed
Mch9g0411 Mch-Chr9:3053525 Mch2g0220 Mch-Chr2:1684991 2.58E-73 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44003 PF07526 POX 4.10E-37 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g0411 - - - 0.0