Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g0455 TCACTTCCATCACCAACAAAACTCAGAGTTCTTCCGCCATTGCAGCTCCTTTTCAAGCTTCTTCTTCTTCTTCTTCTCCGCCTTCCGACCTCCATGGCCCGACCACAGCAGCGATATCGCGGTGTTCGTCAACGGCATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCTCTATTGAAGACAAGAATATGGTTGGGGACGTTCGAGACGGCGGAGGACGCGGCCCGAGCTTACGATGAGGCAGCGCGGTTGATGTGTGGCGCGAAAGCGCGAACCAACTTCCAATTCAATCCCAATGATTCACAATCATCTTCCAAGCTTCTCTCCGCCGCGCTGATAGCGAAATTACACAAATGCCATTTAGCCTCCCTTCAAATAGCCAAAAAACACATCCACAAACACCCCGGATTCGACCCGAGCTACGCCCCATACGGCGGCTCTCCGACCAGCATTGTCGGGACCACCACGGACGGGTGGCCGCAAGACGAAACTTGGGTGTACTCCGACGAGGGCCAGACTGAGGCCAATAACAACATTCATCAGCAATGCCTTCAGCCTCTTGAAGATGATCATATTGAACAAATGATACAAGAGCTCCTAGACCTCGGATCTTTCGAAATTATTACATAA 630 51.9 SLPSPTKLRVLPPLQLLFKLLLLLLLRLPTSMARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGAKARTNFQFNPNDSQSSSKLLSAALIAKLHKCHLASLQIAKKHIHKHPGFDPSYAPYGGSPTSIVGTTTDGWPQDETWVYSDEGQTEANNNIHQQCLQPLEDDHIEQMIQELLDLGSFEIIT 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3388481 3389771 - MC09g0374 Mch9g0455 697337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g0455 209 CDD AP2 37 95 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch9g0455 209 Gene3D AP2/ERF domain 37 96 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch9g0455 209 ProSiteProfiles AP2/ERF domain profile. 38 95 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch9g0455 209 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 34 155 IPR050913 -
Mch9g0455 209 PRINTS Ethylene responsive element binding protein signature 39 50 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch9g0455 209 PRINTS Ethylene responsive element binding protein signature 61 77 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch9g0455 209 Pfam AP2 domain 38 87 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch9g0455 209 SMART rav1_2 38 101 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch9g0455 209 SUPERFAMILY DNA-binding domain 38 96 IPR016177 GO:0003677(InterPro)
Mch9g0455 209 FunFam Ethylene-responsive transcription factor 2 37 96 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g0487 Mch-Chr8:3421508 Mch9g0455 Mch-Chr9:3388481 3.45E-56 dispersed
Mch8g0488 Mch-Chr8:3428700 Mch9g0455 Mch-Chr9:3388481 7.95E-54 dispersed
Mch8g1129 Mch-Chr8:8077157 Mch9g0455 Mch-Chr9:3388481 2.51E-26 dispersed
Mch8g3079 Mch-Chr8:33261065 Mch9g0455 Mch-Chr9:3388481 1.88E-29 dispersed
Mch9g0455 Mch-Chr9:3388481 Mch4g0688 Mch-Chr4:4587433 5.12E-21 dispersed
Mch9g0451 Mch-Chr9:3355608 Mch9g0455 Mch-Chr9:3388481 6.28E-20 proximal
Mch8g1082 Mch-Chr8:7650517 Mch9g0455 Mch-Chr9:3388481 3.41E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44006 PF00847 AP2 1.20E-11 CL0081 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g0455 - - - 0.0