Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g0482 ATGTTAGGCGATAAGAAAACCACAATTCCTCGGCAATCTTCCTACAATTCCCTGTACTTGAATCCCCTCAACGACCTCCGCCACGCCCGCAGCTGCAGCGACGGCGGCGGATTCCGGCAAGGCAAAGAAAACTTGACCTCCAATACGAAGGATGAGAAAGAAAAGGCGATCCCCACCATTAATAATGGGAAGAAATTTGGGGATTTGAAGGCTTTGAAGGCTTCTTCGCTTCATGTGTGTATGCAGATGAACGAGGGAGACAAGGTTTTCGCCTCCAAATTGTGGGACGGCACCGATTCAGAGCACTCCAGTTCGTTGAAGATTTGGGACTTTTCCGATTCTGAAGCTGCTCCAGCTTCCTCTTGGTCCACTTTGCCTAACAGGTCGTTGTTGTGTCGGCCATTGCCTGTGGATGTGGGGAGATGTAGCTGTGTCATTGTGAAGGAAAAATCGCCTGATGGCCTTCATGCTGGCGCTTTCTATTCTCTATACACCAATGAAGGGAAGGGACGGCAGGATCGGAAGCTGGCCGTGGCTCGCCATAGACGGCGGAGCGGGCGATCGGAGTATAAAATAGCTCAGAGTACAAGAGGGATACTCTGCAACGCAGATGATAGTTTTGTTGGATCCATGACTACAAACCTTGTTGGTTCAAAATACCATATTTGGGATCAGGGGAACCGTCTTAAGTCAATCCCGGGCCAGTCGAAAACGCTTTTGGCTGCTGTAACATTCATGCCTACAACAGCTACATGGACTGGGAGTCATAGAAGCATGAAGGCTTTCATCCCCAAGCATCAATCAATGCAGCTGAAAAACACCAATCAGGTGCAGCACATAGCAGGGCTGCCAAGGGAGTGGGAAGAAAAAAAGGACAAAGTCCATCAGCTTGTTTCTAAGGCTCCCCAATACAATAAGATTTCCAAGCAATATGAGTTGGACTTCAAAGACAGAGGAAGGGCAGTTTCAGGTCTTATGATTAAGACCTCTGTGAAGAATTTTCAGTTAACTTTAGAGGAAAATGGGAAGCAAACAATTCTCCAACTTGGAAGGATTGGGAAGTCCAAGTATGTGATGGATTACAGATATCCATTGACAGGTTACCAAGCATTTTGCATATGTCTGGCTTCCATAGATTCAAAGCTTTGTTGCTCAGTATAA 1161 46.86 MLGDKKTTIPRQSSYNSLYLNPLNDLRHARSCSDGGGFRQGKENLTSNTKDEKEKAIPTINNGKKFGDLKALKASSLHVCMQMNEGDKVFASKLWDGTDSEHSSSLKIWDFSDSEAAPASSWSTLPNRSLLCRPLPVDVGRCSCVIVKEKSPDGLHAGAFYSLYTNEGKGRQDRKLAVARHRRRSGRSEYKIAQSTRGILCNADDSFVGSMTTNLVGSKYHIWDQGNRLKSIPGQSKTLLAAVTFMPTTATWTGSHRSMKAFIPKHQSMQLKNTNQVQHIAGLPREWEEKKDKVHQLVSKAPQYNKISKQYELDFKDRGRAVSGLMIKTSVKNFQLTLEENGKQTILQLGRIGKSKYVMDYRYPLTGYQAFCICLASIDSKLCCSV 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3555732 3561352 + MC09g0392 Mch9g0482 697364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g0482 386 PRINTS Tubby superfamily signature 322 338 IPR000007 -
Mch9g0482 386 PRINTS Tubby superfamily signature 363 385 IPR000007 -
Mch9g0482 386 PRINTS Tubby superfamily signature 342 361 IPR000007 -
Mch9g0482 386 PRINTS Tubby superfamily signature 207 231 IPR000007 -
Mch9g0482 386 SUPERFAMILY Tubby C-terminal domain-like 119 384 IPR025659 -
Mch9g0482 386 MobiDBLite consensus disorder prediction 31 52 - -
Mch9g0482 386 Gene3D Tubby Protein; Chain A 124 385 IPR025659 -
Mch9g0482 386 Pfam Tub family 131 380 IPR000007 -
Mch9g0482 386 PANTHER TUBBY-RELATED 117 384 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch7g1139 Mch-Chr7:15273539 Mch9g0482 Mch-Chr9:3555732 1.43E-13 dispersed
Mch9g0482 Mch-Chr9:3555732 Mch5g0669 Mch-Chr5:4512248 3.46E-13 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44007 PF01167 Tub 3.50E-46 CL0395 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g0482 K19600 - csv:101216780 691.034