Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g0483 TGCCCTTTAAAATTGCCATTTTCCATTGGACGACTCAGTCCTTTCTCCTCTCTCTCCTCTCTCTTTCTCTCTCTTCTTCTTCCTGCTCCATCTCCTTCTCTGCTCGTTTTAATGGGGAAGATCTCCCATCCGCCGCACAAGAATTCCATTTCCACCACTGATAATACTCACTCAACTACTCCTCGCCATGAGAGGAAGCTACAGAAGCGCAAGCGTAAGACTGTTCCGCGAGATTCTCCGGCTCAGCGTAGCTCTGTCTACCGCGGAGTCACCAGGCATAGATGGACGGGACGGTATGAGGCACATTTGTGGGATAAGAATTGCTGGAATGAAGGACAGAACAAGAAAGGAAGACAAGGAGCGTATGATGATGAAGCAGCAGCGGCTCATGCTTACGACCTGGCGGCACTCAAGTACTGGGGAACTGAAACTGTTCTTAACTTTCCATTATTGACGTACCAAGACGAACTCAAAGAGATGGAAGGTCAATCAAGAGAAGAGTATATTGGATTTTTGAGAAGGAAGAGTAGCGGTTTTTCTCGCGGGGTTTCAAAGTATAGAGGTGTAGCAAGACACCATCATAATGGAAGATGGGAAGCTCGAATTGGCAGAGTGCTTGGCAACAAATACCTTTACCTTGGAACATATGCTACCCAGGAAGAAGCTGCCACAGCTTACGACATGGCGGCCATCGAGTACCGTGGCCTTAACGCCGTTACAAATTTCGACCTCAGCCGTTACATCAAATCCCTCCGTCCTAGGCAACAACAGAGTATTATCTCCAACAACCGTCCTCCAAACCCTAACGCCGGCGAATTACCTGCTCTAGAATTTGACCCCAATTCCCTCCTCGGATTTACTTTCCCGTCGCAATGTTCCAGCTCCGGCCAACCCGCCACCGCGCCGCTCCCCGGACCCGGTGGCGGTGACTCTTCCTCGTCGGCGGCGCTGGGACTCCTCCTCCAGTCGTCAAAATTACAAGACGTGTTAGAGAGAACGTCCGCCGCCGACGCTCCAGAGACGCCCCCGGAATCGGACCGGCCGCGCCGCTGCTTTCCAGACGACGTTCAAACTTACTTCGATTCTACTCAAGATTCCGGCGACTTTGCCGAAAGCGACGACGGCATTTTCGGGTACCTAAACTCGCTTTTTCCTTCCACGATTTTTCACTGCGAACTGGATGCTTAA 1188 51.18 CPLKLPFSIGRLSPFSSLSSLFLSLLLPAPSPSLLVLMGKISHPPHKNSISTTDNTHSTTPRHERKLQKRKRKTVPRDSPAQRSSVYRGVTRHRWTGRYEAHLWDKNCWNEGQNKKGRQGAYDDEAAAAHAYDLAALKYWGTETVLNFPLLTYQDELKEMEGQSREEYIGFLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVLGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKSLRPRQQQSIISNNRPPNPNAGELPALEFDPNSLLGFTFPSQCSSSGQPATAPLPGPGGGDSSSSAALGLLLQSSKLQDVLERTSAADAPETPPESDRPRRCFPDDVQTYFDSTQDSGDFAESDDGIFGYLNSLFPSTIFHCELDA 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3560491 3565683 - MC09g0393 Mch9g0483 697365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g0483 395 MobiDBLite consensus disorder prediction 45 87 - -
Mch9g0483 395 PRINTS Ethylene responsive element binding protein signature 225 245 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch9g0483 395 PRINTS Ethylene responsive element binding protein signature 87 98 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch9g0483 395 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 70 264 - -
Mch9g0483 395 Gene3D AP2/ERF domain 86 151 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch9g0483 395 Gene3D AP2/ERF domain 184 245 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch9g0483 395 Pfam AP2 domain 184 235 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch9g0483 395 ProSiteProfiles AP2/ERF domain profile. 86 149 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch9g0483 395 FunFam AP2-like ethylene-responsive transcription factor 184 245 - -
Mch9g0483 395 SUPERFAMILY DNA-binding domain 184 245 IPR016177 GO:0003677(InterPro)
Mch9g0483 395 FunFam AP2-like ethylene-responsive transcription factor 85 151 - -
Mch9g0483 395 MobiDBLite consensus disorder prediction 254 276 - -
Mch9g0483 395 MobiDBLite consensus disorder prediction 289 314 - -
Mch9g0483 395 CDD AP2 184 245 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch9g0483 395 ProSiteProfiles AP2/ERF domain profile. 185 243 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch9g0483 395 MobiDBLite consensus disorder prediction 254 268 - -
Mch9g0483 395 SUPERFAMILY DNA-binding domain 85 150 IPR016177 GO:0003677(InterPro)
Mch9g0483 395 SMART rav1_2 86 155 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch9g0483 395 SMART rav1_2 185 249 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch9g0483 395 MobiDBLite consensus disorder prediction 330 351 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g0591 Mch-Chr6:4024548 Mch9g0483 Mch-Chr9:3560491 1.90E-134 dispersed
Mch8g1031 Mch-Chr8:7280075 Mch9g0483 Mch-Chr9:3560491 4.11E-77 dispersed
Mch8g2499 Mch-Chr8:27903072 Mch9g0483 Mch-Chr9:3560491 8.54E-79 dispersed
Mch9g0483 Mch-Chr9:3560491 Mch9g1891 Mch-Chr9:20537313 2.43E-90 dispersed
Mch9g0483 Mch-Chr9:3560491 Mch8g0606 Mch-Chr8:4348038 1.15E-78 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44008 PF00847 AP2 1.40E-08 CL0081 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g0483 K09285 - csv:101206499 526.554