Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g0512 ATGGAGCTCGGTCTGTCCTTAGGCGACGCCCCCAAGCCCTTCCGCTTCGTGGAGAAGCAGCCGCCGCGGGGCGTTTCCCGTACAGATTTGGGCTTCTGCGTCGACTTGTCGATCGGCCGTCCGGTCGCCGGAGAGACAGAAGACGACGAGGGAAAGCTGAACCAGAGAGAAGACGAATCCGACGGAAACGAAGAAGCTCCGGTTCAGCTCGATCTTCTCCCTCACAGCCCCGTTCCCCGTAACCTAACCAATCCGTACCAGGGATTCCCCTGGCCGTCCTCCGAAAACGATGAAGGAGATCAGGACCGAACCGCATCTCCGAACAGCGCAGCGTCGTCGTTTCAGATGGAATTTGGGCTGTACGGCGGAAGAGGAACCACTTCTTCCCGGAGAGACCTAATCGAAAATGGCGTCGCCAACGAAATCGGCGAATCCGAGAGAGCCTCCTCACGAGCCAGCGATGAAGACGAAAATGGCTCCACGAGGAAAAAACTCCGCCTCTCTAAAGAACAATCCGCTTTCCTCGAAGAAAGCTTTAAAGAACACAACACCTTAAACCCTAAGCAGAAACAGGCGCTGGCTAAGCAGCTCAATCTCCGGCCCCGCCAAGTGGAGGTTTGGTTCCAAAACAGAAGAGCCAGGACGAAATTGAAGCAAACGGAGGTGGATTGTGAGTATTTAAAGAGATGCTGCGAGACTTTAACGGAGGAGAATCGACGGCTCCAGAAGGAGCTTCAAGAATTGAGAGCCTTGAAAACCAACAACTCGTTTTATATGCAATTACCGGCCACCACGCTGACGATGTGCCCGTCGTGCGAGCGAGTGACCACCGCGAGCACCGCCGCGGGGAAGTCGACGGAGCCAATTTCGAAACGGTCTGGGTTCGCCATTGCCGGACCCAGCTCCTCCTCCTCGTCCTACCCATTTTCTAGCGCTCAGACGCCGCAGTCCCACCAGTCAACAGCTTCATGA 972 55.76 MELGLSLGDAPKPFRFVEKQPPRGVSRTDLGFCVDLSIGRPVAGETEDDEGKLNQREDESDGNEEAPVQLDLLPHSPVPRNLTNPYQGFPWPSSENDEGDQDRTASPNSAASSFQMEFGLYGGRGTTSSRRDLIENGVANEIGESERASSRASDEDENGSTRKKLRLSKEQSAFLEESFKEHNTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTNNSFYMQLPATTLTMCPSCERVTTASTAAGKSTEPISKRSGFAIAGPSSSSSSYPFSSAQTPQSHQSTAS 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3807043 3809417 + MC09g0419 Mch9g0512 697394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g0512 323 SMART HOX_1 160 222 IPR001356 GO:0003677(InterPro)
Mch9g0512 323 Pfam Homeobox associated leucine zipper 218 252 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch9g0512 323 SUPERFAMILY Homeodomain-like 154 219 IPR009057 -
Mch9g0512 323 ProSiteProfiles 'Homeobox' domain profile. 158 218 IPR001356 GO:0003677(InterPro)
Mch9g0512 323 SMART halz 218 261 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch9g0512 323 MobiDBLite consensus disorder prediction 147 167 - -
Mch9g0512 323 MobiDBLite consensus disorder prediction 42 63 - -
Mch9g0512 323 FunFam Homeobox-leucine zipper protein 18 146 223 - -
Mch9g0512 323 CDD homeodomain 162 219 IPR001356 GO:0003677(InterPro)
Mch9g0512 323 Pfam Homeodomain 162 216 IPR001356 GO:0003677(InterPro)
Mch9g0512 323 MobiDBLite consensus disorder prediction 138 167 - -
Mch9g0512 323 Gene3D - 166 216 - -
Mch9g0512 323 MobiDBLite consensus disorder prediction 296 323 - -
Mch9g0512 323 MobiDBLite consensus disorder prediction 279 323 - -
Mch9g0512 323 MobiDBLite consensus disorder prediction 1 113 - -
Mch9g0512 323 Coils Coil 224 254 - -
Mch9g0512 323 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 50 292 IPR050762 -
Mch9g0512 323 ProSitePatterns 'Homeobox' domain signature. 193 216 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g0045 Mch-Chr5:354807 Mch9g0512 Mch-Chr9:3807043 1.59E-57 dispersed
Mch9g0512 Mch-Chr9:3807043 Mch9g1254 Mch-Chr9:14358901 1.19E-41 dispersed
Mch5g1450 Mch-Chr5:15582998 Mch9g0512 Mch-Chr9:3807043 2.99E-86 wgd
Mch8g0968 Mch-Chr8:6886615 Mch9g0512 Mch-Chr9:3807043 4.71E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44010 PF00046 Homeodomain 5.40E-16 CL0123 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g0512 K09338 - csv:101221600 516.153