Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch9g0512 | ATGGAGCTCGGTCTGTCCTTAGGCGACGCCCCCAAGCCCTTCCGCTTCGTGGAGAAGCAGCCGCCGCGGGGCGTTTCCCGTACAGATTTGGGCTTCTGCGTCGACTTGTCGATCGGCCGTCCGGTCGCCGGAGAGACAGAAGACGACGAGGGAAAGCTGAACCAGAGAGAAGACGAATCCGACGGAAACGAAGAAGCTCCGGTTCAGCTCGATCTTCTCCCTCACAGCCCCGTTCCCCGTAACCTAACCAATCCGTACCAGGGATTCCCCTGGCCGTCCTCCGAAAACGATGAAGGAGATCAGGACCGAACCGCATCTCCGAACAGCGCAGCGTCGTCGTTTCAGATGGAATTTGGGCTGTACGGCGGAAGAGGAACCACTTCTTCCCGGAGAGACCTAATCGAAAATGGCGTCGCCAACGAAATCGGCGAATCCGAGAGAGCCTCCTCACGAGCCAGCGATGAAGACGAAAATGGCTCCACGAGGAAAAAACTCCGCCTCTCTAAAGAACAATCCGCTTTCCTCGAAGAAAGCTTTAAAGAACACAACACCTTAAACCCTAAGCAGAAACAGGCGCTGGCTAAGCAGCTCAATCTCCGGCCCCGCCAAGTGGAGGTTTGGTTCCAAAACAGAAGAGCCAGGACGAAATTGAAGCAAACGGAGGTGGATTGTGAGTATTTAAAGAGATGCTGCGAGACTTTAACGGAGGAGAATCGACGGCTCCAGAAGGAGCTTCAAGAATTGAGAGCCTTGAAAACCAACAACTCGTTTTATATGCAATTACCGGCCACCACGCTGACGATGTGCCCGTCGTGCGAGCGAGTGACCACCGCGAGCACCGCCGCGGGGAAGTCGACGGAGCCAATTTCGAAACGGTCTGGGTTCGCCATTGCCGGACCCAGCTCCTCCTCCTCGTCCTACCCATTTTCTAGCGCTCAGACGCCGCAGTCCCACCAGTCAACAGCTTCATGA | 972 | 55.76 | MELGLSLGDAPKPFRFVEKQPPRGVSRTDLGFCVDLSIGRPVAGETEDDEGKLNQREDESDGNEEAPVQLDLLPHSPVPRNLTNPYQGFPWPSSENDEGDQDRTASPNSAASSFQMEFGLYGGRGTTSSRRDLIENGVANEIGESERASSRASDEDENGSTRKKLRLSKEQSAFLEESFKEHNTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTNNSFYMQLPATTLTMCPSCERVTTASTAAGKSTEPISKRSGFAIAGPSSSSSSYPFSSAQTPQSHQSTAS | 323 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 3807043 | 3809417 | + | MC09g0419 | Mch9g0512 | 697394 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch9g0512 | 323 | SMART | HOX_1 | 160 | 222 | IPR001356 | GO:0003677(InterPro) | |
Mch9g0512 | 323 | Pfam | Homeobox associated leucine zipper | 218 | 252 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch9g0512 | 323 | SUPERFAMILY | Homeodomain-like | 154 | 219 | IPR009057 | - | |
Mch9g0512 | 323 | ProSiteProfiles | 'Homeobox' domain profile. | 158 | 218 | IPR001356 | GO:0003677(InterPro) | |
Mch9g0512 | 323 | SMART | halz | 218 | 261 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch9g0512 | 323 | MobiDBLite | consensus disorder prediction | 147 | 167 | - | - | |
Mch9g0512 | 323 | MobiDBLite | consensus disorder prediction | 42 | 63 | - | - | |
Mch9g0512 | 323 | FunFam | Homeobox-leucine zipper protein 18 | 146 | 223 | - | - | |
Mch9g0512 | 323 | CDD | homeodomain | 162 | 219 | IPR001356 | GO:0003677(InterPro) | |
Mch9g0512 | 323 | Pfam | Homeodomain | 162 | 216 | IPR001356 | GO:0003677(InterPro) | |
Mch9g0512 | 323 | MobiDBLite | consensus disorder prediction | 138 | 167 | - | - | |
Mch9g0512 | 323 | Gene3D | - | 166 | 216 | - | - | |
Mch9g0512 | 323 | MobiDBLite | consensus disorder prediction | 296 | 323 | - | - | |
Mch9g0512 | 323 | MobiDBLite | consensus disorder prediction | 279 | 323 | - | - | |
Mch9g0512 | 323 | MobiDBLite | consensus disorder prediction | 1 | 113 | - | - | |
Mch9g0512 | 323 | Coils | Coil | 224 | 254 | - | - | |
Mch9g0512 | 323 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 | 50 | 292 | IPR050762 | - | |
Mch9g0512 | 323 | ProSitePatterns | 'Homeobox' domain signature. | 193 | 216 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch5g0045 | Mch-Chr5:354807 | Mch9g0512 | Mch-Chr9:3807043 | 1.59E-57 | dispersed | |
Mch9g0512 | Mch-Chr9:3807043 | Mch9g1254 | Mch-Chr9:14358901 | 1.19E-41 | dispersed | |
Mch5g1450 | Mch-Chr5:15582998 | Mch9g0512 | Mch-Chr9:3807043 | 2.99E-86 | wgd | |
Mch8g0968 | Mch-Chr8:6886615 | Mch9g0512 | Mch-Chr9:3807043 | 4.71E-48 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
44010 | PF00046 | Homeodomain | 5.40E-16 | CL0123 | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch9g0512 | K09338 | - | csv:101221600 | 516.153 |