Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g0548 ATGACAGATCCTTACTCCAATTTCTTCACTCCCAATTCCTTCAACTTCATCCCTCTCCATTCCGAATCAAACCCTTCTTTAAATTTCTCTCTCTCCCACCACTCCCATTCCGCCGCCGCCCATTGCCGGCCGCCGTCCCCTCCGCCGCAGGCCCTCCCTCTCCTCAACACCCTCTCGCCGGAAACCGCCGACCCCTCCTCCACCAGCTGCAGCTTCGACGACGAATCTGCCCTCGCCCTCGAAATCAGCCTGTCTTGCCCTAGCTCCGATCTGGAATCCCATTTCTCGCCGGAGCCGGCCGGAAAACCCGACGACGCCGACCTTTCCGGACACCCTTTGGAGAGCTCCGGCAAGGGTCAGTTCTGGATTCCCACTCCGGCTCAGATCCTCATCGGCCCTACGCAATTCTCTTGCCCTCTTTGCTCCAAAGCCTTCAATAGATACAATAATCTTCAGATGCATATGTGGGGGCATGGTTCTCAGTACAGAAAGGGACCAGAGTCCCTAAAAGGGAGTCAGCCAACGGCAATGCTGCGGCTGCCGTGCTACTGCTGCGCCCCGGGCTGCAAACACAACATCGATAACCCGAGGTCGAGGCCGCTCAAGGACTTCCGCACCCTCCAAACACATTACAAGCGAAAGCACGGCGTCAAGCCCTTCACCTGCCGAAAATGCAGCAAAGCCTTCGCCGTGAAAGGCGACTGGCGAACCCACGAGAAGAACTGTGGGAAGATTTGGTATTGCTTCTGTGGCTCCGACTTCAAACACAAGCGCTCGCTCAAGGACCACATCAAGGCCTTTGGACGAGGCCATGGCGCCCTAGGCCTCGACTACTTTGAAGATGACAACGAACCTGCGTCCGAAGTCGAACATGAAGGCGTTGTCATCCATTGA 894 56.6 MTDPYSNFFTPNSFNFIPLHSESNPSLNFSLSHHSHSAAAHCRPPSPPPQALPLLNTLSPETADPSSTSCSFDDESALALEISLSCPSSDLESHFSPEPAGKPDDADLSGHPLESSGKGQFWIPTPAQILIGPTQFSCPLCSKAFNRYNNLQMHMWGHGSQYRKGPESLKGSQPTAMLRLPCYCCAPGCKHNIDNPRSRPLKDFRTLQTHYKRKHGVKPFTCRKCSKAFAVKGDWRTHEKNCGKIWYCFCGSDFKHKRSLKDHIKAFGRGHGALGLDYFEDDNEPASEVEHEGVVIH 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3996173 3998848 - MC09g0449 Mch9g0548 697430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g0548 297 MobiDBLite consensus disorder prediction 55 71 - -
Mch9g0548 297 ProSitePatterns Zinc finger C2H2 type domain signature. 138 158 IPR013087 -
Mch9g0548 297 Gene3D Classic Zinc Finger 135 158 - -
Mch9g0548 297 MobiDBLite consensus disorder prediction 38 71 - -
Mch9g0548 297 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 219 243 - -
Mch9g0548 297 MobiDBLite consensus disorder prediction 89 117 - -
Mch9g0548 297 FunFam Zinc finger protein WIP2 189 271 - -
Mch9g0548 297 Gene3D Classic Zinc Finger 198 271 - -
Mch9g0548 297 SUPERFAMILY beta-beta-alpha zinc fingers 129 158 IPR036236 -
Mch9g0548 297 MobiDBLite consensus disorder prediction 97 111 - -
Mch9g0548 297 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 163 IPR013087 -
Mch9g0548 297 SMART c2h2final6 136 158 IPR013087 -
Mch9g0548 297 SMART c2h2final6 220 240 IPR013087 -
Mch9g0548 297 PANTHER ZINC FINGER PROTEIN WIP2 107 292 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER)
Mch9g0548 297 SUPERFAMILY beta-beta-alpha zinc fingers 203 240 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0130 Mch-Chr2:990887 Mch9g0548 Mch-Chr9:3996173 1.02E-109 wgd
Mch5g1409 Mch-Chr5:15143728 Mch9g0548 Mch-Chr9:3996173 3.57E-111 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44014 PF00096 zf-C2H2 0.0015 CL0361 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g0548 - - - 0.0