Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g0557 ATGGAACCTGGAGAATCTGCGGCAAAGGTTATGAAGAACATGGGCCCCCATGCCTGTCAAATCTGTGGAGACAACGTCGGGAAGACTGTCGATGGTGAACTGTTCGCTGCCTGTGATGTTTGCACATTTCCTGTCTGTAGACCGTGCTATGAGTACGAGAGAAAAGATGGGAATCAGTCTTGTCCTCAGTGCAAAAGCCGATACAAGAGGCACAAAGGAAGTCCTGCTGTTCTTGGTGATGAAGAGGATGCTGAGCTTGATGACGACGACGATGCCATTGATTTGAATTACATTTCTGAAAGTCAGAAACAGAAGCAGAAGATTGCGGAGCGTATGATGAGCTGGCAGATGGCATACGAGCAGCCTCCGAATTACGACAAAGAAGTTTCCATAAATCACATTCCCTTGCTCACCAATGGGCAGGAGGTTTCTGGAGAACTCTCAGCTGCGTCACCCGAGCATCATTCGATGGCATCTCCCGGACATCCTCGTGGGAAAATATATTCTCTTCCTTATGCAGCTGATATTAACCAATCACCTAATGTGCGAGGCGTGGACCCCGTAAAAGAGTATAATTCATCGGGGCTCGGGAATGTAGCTTGGAAAGAGAGAGTTGACGGCTGGAAGATGAAACAGGAGAGGAATGCTGTTCCAATGAGCACAGCCCATGCTGCATCTGAAAGGGGTAATGGAGATATTGATGCCTGCACAGATGTGCTTGTTGATGACTCCTTATTAAACGATGAAGCTCGCCAGCCTCTCTCAAGAAAGGTTTCGGTTCCATCGTCTAGGATAAACCCTTATCGAATGGTGATTGTTCTGCGGCTTGTGATTCTTTGCTTTTTCTTGCATTACCGAATAACAAATCCGGTGCGCAATGCATACGCTCTATGGCTGATATCTGTTATATGTGAGATCTGGTTTGCTATATCCTGGATATTAGATCAGTTCCCGAAGTGGCTTCCTGTAAACCGTGAGACATATCTCGATCGGCTTGCATTAAGGTACGACAGGGAAGGAGAATCATCACAACTTGCTGCTGTAGACATTTTTGTGAGTACTGTTGACCCACTGAAGGAGCCTCCTCTTGTCACAGCCAATACTGTGCTATCGATTCTCGCTGTCGACTACCCGGTTGACAAGGTCTCGTGCTACGTCTCTGACGATGGAGCTGCCATGTTGACATTCGAAGCATTGTCCGAGACGTCGGAGTTTGCAAGGTCATGGGTGCCTTTCTGCAAGAGATACAACATCGAGCCTCGGGCCCCCGAATGGTACTTCGCGCAGAAAATCGATTACTTGAAGGATAAAGTCCATCCATCATTTGTCAAAGATCGAAGGGCAATGAAGAGAGAATACGAGGAGTTTAAGGTTCGCATCAATGGTCTGGTGTCAAAGGCACAGAAGGTCCCTGAAGAAGGGTGGATCATGCAAGATGGAACTCCGTGGCCTGGAAATAACACTAGAGACCATCCCGGGATGATCCAAGTTTTCTTAGGCCAAAATGGCGGATTAGATTCCGAAGGCAACGAGTTGCCTCGTCTTGTATACGTATCTCGTGAAAAGCGTCCTGGATTCCAACATCACAAGAAAGCCGGTGCCATGAATGCACTTGTTCGGGTTTCTGCTGTTCTTACCAATGGCCCGTTCCTGTTGAATCTCGACTGTGATCATTACATAAACAACAGCAAGGCCCTGAGAGAAGCAATGTGTTTCATGATGGATCCCAACCTCGGAAAATTCGTCTGTTATGTTCAGTTTCCCCAAAGATTTGATGGCATTGACAAGAACGACCGGTATGCCAACCGGAATACCGTTTTCTTTGACATAAATTTGAGAGGTTTGGATGGGATTCAAGGCCCAGTTTACGTGGGCACTGGATGCGTCTTCAACAGAACCGCACTGTACGGTTACGAACCTCCTCACAAGCCCAAGAATCGGAAGCCAGGGCTTCTGTCATCGCTCTGCGGCGGATCCAGAAAGAAGAAATCAAAATCGAGCAAAAAGAGCCCCGACAGGAAGAAATCCAACACCCATGTTGTCGACCCGACAGTCCCCATTTTCAATCTCGACGACATTGAGGAAGTGGTTGAAGGAGCCGGATTTGACGATGAGAAATCGCTGCTGATGTCGCAAATGACTCTGGAGCAGAGGTTCGGGCAATCCGCCGTGTTCGTTGCGTCGACGCTTATGGAAAACGGCGGCGTTCCGCAGTCGGCGACGCCGGAGTCTCTTCTGAAGGAGGCTATTCATGTCATCAGCTGCGGGTATGAAGACAAAACTGACTGGGGATCTGAGATTGGATGGATTTATGGGTCTGTCACTGAAGATATCCTTACTGGGTTCAAAATGCATGCTCGTGGTTGGCGATCGATTTACTGCAACCCGAAGCGACCCGCCTTTAAAGGGTCTGCGCCGATCAATCTTTCGGATCGATTGAACCAAGTGCTCCGGTGGGCTCTCGGGTCTGTGGAGATTCTTCTCAGTAGGCATTGCCCTATCTGGTATGGCTATGGCGGGCGCCTCAAATGGCTCGAAAGGTTTGCGTACGTGAACACGACGATTTATCCCATCACTGCTGTTCCTCTTCTCATGTATTGTACCTTACCCGCCGTGTGTCTGCTCACGAACAAGTTCATCATTCCCCAGATTAGTAACATTGCAAGTATATGGTTTATATCCCTCTTCCTCTCCATTTTCGCAACTGGCATTCTCGAGATGAGATGGAGCGGGGTTGGGATCGACGAGTGGTGGAGAAACGAACAATTTTGGGTCATTGGTGGTGTTTCAGCTCACCTGTTTGCAGTTTTCCAAGGGCTGCTCAAGGTTCTTGCTGGAATCGACACCAACTTCACGGTCACGTCCAAGGCATCGGATGAAGACGGGGACTTTGCCGAGCTTTACCTGTTCAAATGGACGACTCTTCTCATCCCACCAACAACCCTCCTCATAGTAAACTTGGTCGGGGTCGTAGCCGGGATATCTTATGCAATCAACAGCGGGTACCAATCATGGGGACCGCTGTTTGGCAAGCTATTCTTCGCCTTTTGGGTGATCATTCATCTCTACCCATTCTTGAAAGGTTTGATGGGTCGCCAAAACAGAACGCCCACCATCGTCGTCGTGTGGTCGATTCTTCTCGCTTCCATTTTCTCGTTACTATGGGTGAGGATCGATCCGTTCACTACATCAGTCACGGGGCCCGACGTCGAGGAGTGTGGAATCAACTGCTAG 3234 48.86 MEPGESAAKVMKNMGPHACQICGDNVGKTVDGELFAACDVCTFPVCRPCYEYERKDGNQSCPQCKSRYKRHKGSPAVLGDEEDAELDDDDDAIDLNYISESQKQKQKIAERMMSWQMAYEQPPNYDKEVSINHIPLLTNGQEVSGELSAASPEHHSMASPGHPRGKIYSLPYAADINQSPNVRGVDPVKEYNSSGLGNVAWKERVDGWKMKQERNAVPMSTAHAASERGNGDIDACTDVLVDDSLLNDEARQPLSRKVSVPSSRINPYRMVIVLRLVILCFFLHYRITNPVRNAYALWLISVICEIWFAISWILDQFPKWLPVNRETYLDRLALRYDREGESSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARSWVPFCKRYNIEPRAPEWYFAQKIDYLKDKVHPSFVKDRRAMKREYEEFKVRINGLVSKAQKVPEEGWIMQDGTPWPGNNTRDHPGMIQVFLGQNGGLDSEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKFVCYVQFPQRFDGIDKNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPHKPKNRKPGLLSSLCGGSRKKKSKSSKKSPDRKKSNTHVVDPTVPIFNLDDIEEVVEGAGFDDEKSLLMSQMTLEQRFGQSAVFVASTLMENGGVPQSATPESLLKEAIHVISCGYEDKTDWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCNPKRPAFKGSAPINLSDRLNQVLRWALGSVEILLSRHCPIWYGYGGRLKWLERFAYVNTTIYPITAVPLLMYCTLPAVCLLTNKFIIPQISNIASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYLFKWTTLLIPPTTLLIVNLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRIDPFTTSVTGPDVEECGINC 1077
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4059083 4067292 - MC09g0457 Mch9g0557 697439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g0557 1077 CDD mRING-HC-C4C4_CesA 17 67 - -
Mch9g0557 1077 Pfam Cellulose synthase 348 1070 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Mch9g0557 1077 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 268 1046 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Mch9g0557 1077 SUPERFAMILY RING/U-box 5 89 - -
Mch9g0557 1077 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 93 IPR013083 -
Mch9g0557 1077 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 486 639 IPR029044 -
Mch9g0557 1077 MobiDBLite consensus disorder prediction 640 680 - -
Mch9g0557 1077 Pfam Zinc-binding RING-finger 9 84 IPR027934 -
Mch9g0557 1077 SUPERFAMILY Nucleotide-diphospho-sugar transferases 362 890 IPR029044 -
Mch9g0557 1077 FunFam Cellulose synthase 465 639 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0569 Mch-Chr11:3634135 Mch9g0557 Mch-Chr9:4059083 0 dispersed
Mch1g0381 Mch-Chr1:7864017 Mch9g0557 Mch-Chr9:4059083 0 dispersed
Mch6g0609 Mch-Chr6:4143842 Mch9g0557 Mch-Chr9:4059083 0 dispersed
Mch7g0997 Mch-Chr7:14178626 Mch9g0557 Mch-Chr9:4059083 3.68E-61 dispersed
Mch8g2161 Mch-Chr8:24701080 Mch9g0557 Mch-Chr9:4059083 2.16E-287 dispersed
Mch9g0011 Mch-Chr9:86668 Mch9g0557 Mch-Chr9:4059083 0 dispersed
Mch9g0557 Mch-Chr9:4059083 Mch5g0065 Mch-Chr5:443226 5.86E-100 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g0557 K10999 - csv:101206590 2047.71