Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g0589 ATGGCGGAATCTGAGCATCGTGCGAAGCGCCCTAGAATTACGAGGGGGGAAGATGATTATATGCCTGGAAGTATAATTGAGATTGAGCTTCACAACTTTATGACCTTTAACCACTTGAAATGTAAACCTGGATCACGTCTGAACCTTGTAATTGGGCCCAATGGATCTGGTAAAAGCTCTATTGTATGTGCTATTGCACTTGGTCTTGGTGGTGAACCTCAGCTACTTGGAAGAGCGACCAGTATTGGAGCATATGTGAAGCGTGGGGAGGAGTCTGGTTATGTTAGAATAACCTTGAGAGGGAGTACTAAAGAGGAGAATATTACGATTATGCGTAGAATGGACACACATAACAAATCTGAGTGGTTGTTCAATGGAAAAGTTGTGCCAAAAAAAGATGTAGCTGGAATCATCCAAAGGTTTAACATTCAAGTTAATAATTTGACTCAATTTTTACCACAGGATAGGGTTTGTGAGTTCGCCAAATTAACTCCTGTGCAACTTTTAGAAGAGACTGAAAAGGCAGTTGGTGATCCTCAACTTCCAATGCTACATCGTGCACTTGTTGAGAAAAGCCGTGACATAAAAAATATGGAACGAGCTGTTGAGAAAAATGGAGACACCCTAGATCAGCTAAAGGCATTAAATGTTGAGCAGGAGAAAGATGTTGAGCGTGTTCGTCAAAGAGATGAACTTTTAAAAAAGGTTGAGTCCATGAAAAAGAAACTGCCATGGCTGAAGTATGACATGAAAAAGGCTGAATATATGGAAGTTAAGGAAAAGGAGAAGGATGCCAAAAAGAAGTTGGATGAAGCTGCCAAGACTTTGAATGATTTAAAGGAGCCAATTGAGAAACAAAAATTGGAGAAGGCAAAGTTGGATGCTAAAATTAAAAAGTACAGCACTCTCATTAATGATAATCACAAGAAAAGGATGGAACTTCAGGAAACTGAAAACCGTTTGGGGGTACAAGTGCAAGGAAAATTGAAAGAGATGGAAGACTTAAGGAAACAAGAAGAATCTCGTCAACAGAGAATCTTACGAGCGAAAGAGGAACTTGAGGCTGCTGAATTGGAACTTCAGAATCTGCCTCCTTACGAACACCCCAAAGATGAGATTGAACGGTTGCGTGCTCAAATTTTGGAGCTGGAAGTTTGTGCAAATCAGAAGAGGCTTGTGAAGTCAGAGATTGAAAGAAATATATCCCAAAAAAGAATTACTTTGAGGCAATGCTTGGATAGGTTAAAGGATATGGAGAATACTAATACAAAACTACTACAGGCATTAAGAAATTCTGGAACGGAGAAGATTTTTGAAGCCTATCACTGGCTTCAAGAACACCGCCATGAGTTCAAGAAGGAGGTGTATGGTCCAGTGTTGCTTGAGGTTAATGTGTCAAATCGGATTCATGCTGACTACCTAGAAGGCCATATTCCGTCCTATGTCTGGAAGTCCTTCATAACTCAAGATTCTGATGATCGTGATGTTATGGTAAAAAACTTGGGCTCATTTGGCGTTCCTATCTTAAACTATGTGGGAGGTGAAAGGCGCACAAATCAGCATTTTGAGATTTCTGAGGAGGTTCGTGCATTTGGCATGTATTCCCGGCTAGACCAAATTTTTGATGCTCCTGCAGCTGTCAAGGAGGTTTTAACCATGCAGTTTGGTTTGGATCATTCATATATTGGTTCGAAGATAACTGATCAGAAGGCCGATGAGGTCTCAAAATTGGGAATTTTAGATTTTTGGACTCCAGATAATCATTATCGATGGTCTCGCTCTAGATATGGTGGTCACATGTCTGGAAGTGTGGAACCAATTGATCGCTCACGACTTCTTTTGTGCAACTTGGATGCGGGAGAAATTGATGGGCTTCGGTCCAGGAAAAATGAGCTAGAAGAATCTGTTTCTGCCTTAGAAGAAAACTGTAAATCGTGTCAGAATGAACTAAGATTGATGGAGGATGAAGAAGCTAAACTTCGCAAACATCGGGATGACATTATAAGTATTGTGCAACATGAGAAGAGAAAACGCCGTGAAATGGAAAATCGCATTGATCAAAGGAAAAAGAAGCTAGAATCTATGGAGCGGGAAGATGACCTGGATACTGTTTTGGCCAAGCTTGTGGATCAAGCTGCAAATTTTAACATTCAAAGGTTCCATCGTGCAATTGAAATTAAGCATTTGCTTGTTGAGGCCGTTTCTTATAGACAGAGCTTAACTAAGAATCATATGTCCTCCATTGAAATTGATGCAAAGATCAGAGAATTGGAGGTAAATCTGAAGCAGCATGAAAAGGTTGCTCTGCAAGCGTCAGTGCAGTTTGAGTACTGCAAGAAGGAAGTCGAGGACTATCGACAGCAACTTTCAGTTGCCAAGAAGAATGCAGAATCTATTGCCGTGATCACACCTGACCTTGAGAAGGAATTTCTTGAGATGCCTACTACAATTGAGGAACTAGAGGCTGCTATTCAAGATAATATTTCTCAAGCTAATTCCATTCTGTTCTTAAACCACAATGTGCTTGAGGAATATGAACATCGTCAGCGTCAGATAGATACCATTGCACGAAAACTAGAAGCTGATAAACATGAACTAAGGAAGTGTATGGATAAAGTTGATGAGCTGAAGGGAAATTGGCTCCCAACATTAAGAAGACTTGTTTCTCAGATAAATGAGACTTTTAGCCGCAACTTTCAAGAGATGGCTGTTGCTGGAGAAGTGTTATTGGATGAGCATGATATGGACTTCGATCAATTTGGGATACTTATTAAAGTAAAGTTCAGACAAGCAGGTCAACTTCAGGTTCTCAGTGCACATCATCAATCTGGAGGGGAACGCTCAGTGTCAACAATTCTCTATCTTGTTTCCCTTCAAGACCTTACCAACTGCCCGTTTAGAGTAGTTGACGAGATAAACCAAGGAATGGATCCCATAAATGAACGGAAGATGTTCCAGCAATTGGTGAGAGCTGCCAGCCAAACAAATACACCACAGTGTTTCCTACTTACTCCAAAGTTACTTCCAGAGTTGGAATATAGTGAGGCCTGTAGCATACTGAATATAATGAATGGACCGTGGATCGAGCAGCCCTCTAGAGCTTGGAGCAATGGAGATAGCTGGGGAACATTGATGAACTATGTAGGAGAAAGCCGATGTTGA 3162 40.86 MAESEHRAKRPRITRGEDDYMPGSIIEIELHNFMTFNHLKCKPGSRLNLVIGPNGSGKSSIVCAIALGLGGEPQLLGRATSIGAYVKRGEESGYVRITLRGSTKEENITIMRRMDTHNKSEWLFNGKVVPKKDVAGIIQRFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPMLHRALVEKSRDIKNMERAVEKNGDTLDQLKALNVEQEKDVERVRQRDELLKKVESMKKKLPWLKYDMKKAEYMEVKEKEKDAKKKLDEAAKTLNDLKEPIEKQKLEKAKLDAKIKKYSTLINDNHKKRMELQETENRLGVQVQGKLKEMEDLRKQEESRQQRILRAKEELEAAELELQNLPPYEHPKDEIERLRAQILELEVCANQKRLVKSEIERNISQKRITLRQCLDRLKDMENTNTKLLQALRNSGTEKIFEAYHWLQEHRHEFKKEVYGPVLLEVNVSNRIHADYLEGHIPSYVWKSFITQDSDDRDVMVKNLGSFGVPILNYVGGERRTNQHFEISEEVRAFGMYSRLDQIFDAPAAVKEVLTMQFGLDHSYIGSKITDQKADEVSKLGILDFWTPDNHYRWSRSRYGGHMSGSVEPIDRSRLLLCNLDAGEIDGLRSRKNELEESVSALEENCKSCQNELRLMEDEEAKLRKHRDDIISIVQHEKRKRREMENRIDQRKKKLESMEREDDLDTVLAKLVDQAANFNIQRFHRAIEIKHLLVEAVSYRQSLTKNHMSSIEIDAKIRELEVNLKQHEKVALQASVQFEYCKKEVEDYRQQLSVAKKNAESIAVITPDLEKEFLEMPTTIEELEAAIQDNISQANSILFLNHNVLEEYEHRQRQIDTIARKLEADKHELRKCMDKVDELKGNWLPTLRRLVSQINETFSRNFQEMAVAGEVLLDEHDMDFDQFGILIKVKFRQAGQLQVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQTNTPQCFLLTPKLLPELEYSEACSILNIMNGPWIEQPSRAWSNGDSWGTLMNYVGESRC 1053
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4362932 4379992 + MC09g0481 Mch9g0589 697471

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g0589 1053 Coils Coil 283 303 - -
Mch9g0589 1053 Coils Coil 408 428 - -
Mch9g0589 1053 FunFam Structural maintenance of chromosomes 5 849 1020 - -
Mch9g0589 1053 Coils Coil 754 774 - -
Mch9g0589 1053 Gene3D - 24 215 IPR027417 -
Mch9g0589 1053 Coils Coil 248 279 - -
Mch9g0589 1053 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 1 1045 IPR027131 GO:0000724(PANTHER)|GO:0000724(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006281(InterPro)|GO:0016887(InterPro)|GO:0030915(PANTHER)|GO:0030915(InterPro)
Mch9g0589 1053 Coils Coil 329 359 - -
Mch9g0589 1053 Coils Coil 842 879 - -
Mch9g0589 1053 Pfam RecF/RecN/SMC N terminal domain 25 993 IPR003395 -
Mch9g0589 1053 Coils Coil 622 666 - -
Mch9g0589 1053 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 996 IPR027417 -
Mch9g0589 1053 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 760 1004 IPR027417 -
Mch9g0589 1053 Coils Coil 195 229 - -
Mch9g0589 1053 Coils Coil 671 698 - -
Mch9g0589 1053 Gene3D - 847 1022 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g0589 K22803 - - csv:101210248 1952.56
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0269 Mch-Chr10:1728075 Mch9g0589 Mch-Chr9:4362932 1.86E-15 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch9g0589 . 4 1044 Structural Maintenance of Chromosomes family AT5G15920 69.3 0.0e+00 1402.5
Mch10g0269 . 14 1033 Structural Maintenance of Chromosomes family AT5G07660 62.6 0.0e+00 1208.4
Mch10g0269 . 2 1033 Structural Maintenance of Chromosomes family AT5G61460 65.5 0.0e+00 1276.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008822 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 32