Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g0642 ATGGAGGACGTGGCGGCAGCCGATTCGTTGAGATGCCCATTTTCCGATGCCTTCGAATTCGTCGACGGAAATGGTCGGCTAGAATTTATGGATCTTCTTGGAGTTCAAGACTTTTCGTCTCAATTATCGTCTTCTCTTATCGTTCCAAATCTTGAGGCAAACTCCATCATAGAGAATCTCGAGATTTGGAACCGTTGGCCCGCAACGTCGAATTCATCATCGACATCTAATGAAACTGTCAACGACGAACTGACAGAGCAGAATCAAGATGGAGGCGAAAAACGTCGCCTACCAGAATCCGTGAAATCTGACCAACGGTCGAAAGTAATGAAGACGAACCAGAAGAAGAAAGAGCAAGAACCACGATTTGCGTTTATGACAAAGAGCGAGGTCGATCACTTGGAAGATGGATATAGATGGAGAAAGTATGGCCAAAAAGCTGTGAAAAACAGCCCTTATCCTAGGAGCTATTATCGTTGCACTAGTGTGGCATGCAATGTAAAGAAACGAGTGGAGAGATGTCTTAAGGATCCGAGCATTGTGGTGACAACCTACGAAGGCCAACACACTCACCCCAGCCCTCTCATGCCCCGATCAACCTTCATTCATCACCCCATTTCTGCCGCCACCGCCCTCCATGGTAGCTCCACAACGTTCGCCACCACGCCCCCGTCTCTCTTCCACTACCGAAATGCACACAATTGGGATTTTGTTGGCCACCCGAACGCTTCCTATGTGTCACCTTCGTTTCATCAGGAGCGACAACTGCATGACATTGTCTCCTCTGAACAAGATGCTCATTTGCTTGCTATCAATTATGGGTCGCTTCAGGATGTCATCTCTTCCAATACGTTAGGCTGGTAG 864 47.8 MEDVAAADSLRCPFSDAFEFVDGNGRLEFMDLLGVQDFSSQLSSSLIVPNLEANSIIENLEIWNRWPATSNSSSTSNETVNDELTEQNQDGGEKRRLPESVKSDQRSKVMKTNQKKKEQEPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSVACNVKKRVERCLKDPSIVVTTYEGQHTHPSPLMPRSTFIHHPISAATALHGSSTTFATTPPSLFHYRNAHNWDFVGHPNASYVSPSFHQERQLHDIVSSEQDAHLLAINYGSLQDVISSNTLGW 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4818780 4821015 - MC09g0530 Mch9g0642 697524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g0642 287 Gene3D WRKY domain 105 195 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch9g0642 287 MobiDBLite consensus disorder prediction 71 86 - -
Mch9g0642 287 SUPERFAMILY WRKY DNA-binding domain 126 194 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch9g0642 287 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 73 201 IPR044810 GO:0003700(InterPro)
Mch9g0642 287 ProSiteProfiles WRKY domain profile. 129 194 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch9g0642 287 SMART WRKY_cls 134 193 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch9g0642 287 MobiDBLite consensus disorder prediction 71 120 - -
Mch9g0642 287 MobiDBLite consensus disorder prediction 87 120 - -
Mch9g0642 287 FunFam WRKY transcription factor 57 120 194 - -
Mch9g0642 287 Pfam WRKY DNA -binding domain 135 192 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g0780 Mch-Chr5:5334212 Mch9g0642 Mch-Chr9:4818780 1.83E-45 dispersed
Mch8g1391 Mch-Chr8:10352924 Mch9g0642 Mch-Chr9:4818780 2.09E-34 dispersed
Mch9g0642 Mch-Chr9:4818780 Mch9g2095 Mch-Chr9:21929943 1.40E-26 dispersed
Mch7g1247 Mch-Chr7:15992564 Mch9g0642 Mch-Chr9:4818780 9.42E-49 wgd
Mch8g2124 Mch-Chr8:24315307 Mch9g0642 Mch-Chr9:4818780 4.95E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44019 PF03106 WRKY 1.10E-25 CL0274 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g0642 - - - 0.0