Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g0659 ATGCATAACATCGCGTACTCTCGCTTGGGCGGTCTTCAGAAATCGTTGGCCTTGTACCAGAAGGTGCCATGGTGGGATCACATCCTGAAACCAGACTCCGATTTCGTGATCCGATGGAACGGAATCTTCCTCGTCACCTGTTTGATCTCGCTCTTCGTCGATCCTCTCTACTTCTACCTCACCATCATCGGCGGCCCCGGCTGTATGCGCTTCCACATCGAACTCGCAATCATCGTCACTTTCTTCCGCACCATCGTCGATTTGTTCTCCCTCTTTCACATTCTCATGAAGTTCCGCACCGCTTTCGTCGCCCCCAATTCCAGGGTTTTCGGCTGCGGTGAGCTCGTCATGGACCCTAAGGCCATTGCTGTGCGATACCTCAAGAAGGATTTTGTTATCGATCTTGCCGCTACGCTTCCCATGCCGCAGTTTGTGATATGGTTCGTAATTCCAGCACTAAAGAACCCAACAGCGACTCATGCGAACCACACTCTTGCTCTGATTGTGTTAATTCAGTATGCCCCCCGCCTGTTTGTTATATTTCCTCTGAACCGACAGATCAATAAAACCACTGGAGCAATTGCCAAAACTGCTTGGGCTGGTGCTGCTTATAATCTCCTCCTTTATTTGCTTGCTAGCCATGTTATAGGAGCTGCATGGTATGTGGCGTCAATTCAGCGCCAGGATGAGTGCTGGAAACTCGAGTGTAGAAAGGAGATGAATGCCACTCGTTCTCCTTCTTGCAGTCCTCTTTTTCTGGACTGTGATAGTTTGGAGCAGCCCGAACGACGTGCTTGGCTAAAAGTTACTCATGTTCTTATAAACTGCGATGCCTTTAATAATGACAAGAATTTCGAGTTTGGGATGTTTGCTGATGCATTTACTGATGAAGTTGCTTCTTCCAAATTTTTCGAAAAGTACTTCTACTGCCTTTGGTGGGGCTTGAAGAGTTTGAGTGCATATGGACAAAATTTAACGACAAGCACTTACATGGGTGAAGTTTTATTTAGCATTTTGATTTGCACAACGGGGTTGGTTCTGTTCTCACACCTCATAGGCCAAGTGCAGAGTTATCTGCAATCTACATCTGCTAGACTTGAGGAGTGGAGAATAAAACGAAGAGACACAGAGGAATGGATGAGGCGTCGACAGTTACCCGTTCATTTGCAAGAGCGCGTTCGTCGATTCGTTCAATATAAATGGATTGCGACTCGAGGTGTCGATGAAGAATCGATCTTGCGCAATCTACCTTTGGACCTTCGACGTCAAATTCAGAGACATCTCTCTCTTGCGCTTGTTCGCCGTGTTCCCTTTTTTGCACAAATGGATGCACAGCTATTGGACGCCATATGCGAACGTCTCGTTTCATCCTTGAATACTAAAGACACGTATATAGTGAGGGAAGGAGATCCTGTAAATGAGATGCATTTCATCATCAGAGGGCAGCTTGAGAGCTCCACCACCAATGGGGGCAGGTCAGGATTCTTCAACTCCATCACCCTGAGACCGGGCGACTTCTGCGGTGAGGAGCTCCTAACATGGGCCTTAGTCCCATCCCCAAGCCTAAGCTTCCCGTCCTCGACTCGAACTGTGAAGTCCCTCACCGAAGTCGAGGCGTTCGCGCTCCAAGCTGAGGATCTCAAGTTTGTAGCCAGCCAGTTCAAGCGCCTCCACAGCAAGAAACTCCAACACGCTTTCAGATACTACTCCCACCAATGGAGGACATGGGGAGCTTGCTTCATGCAGGCTGCTTGGAGAAGATATGTGAAAAGAAAGCTGGCCATGGAGTTGGCAAGACAAGAGGAACTTTATTACACAACCATCATGGACCAAGACCAGAGCCATGGAAGTGAAATGGAAGGCGAAGGAGATGGTGAAACCAGTGGCTCCAAAAATGGAAGTGTGAGCAAGCCCCAAAATCTTGGAGTCACAATGTTGGCTTCAAAGTTTGCAGCAACTACCAGAAAAGGGATTGCCCAGAAGTTGTCTGGCCTTGATTCTGATGCCACCAGCTTGAAAATGCCCAAGTTGTTCAAGCCAGATGAACCAGATTTCTCTGCTTTCCACGAAGGATAA 2076 48.03 MHNIAYSRLGGLQKSLALYQKVPWWDHILKPDSDFVIRWNGIFLVTCLISLFVDPLYFYLTIIGGPGCMRFHIELAIIVTFFRTIVDLFSLFHILMKFRTAFVAPNSRVFGCGELVMDPKAIAVRYLKKDFVIDLAATLPMPQFVIWFVIPALKNPTATHANHTLALIVLIQYAPRLFVIFPLNRQINKTTGAIAKTAWAGAAYNLLLYLLASHVIGAAWYVASIQRQDECWKLECRKEMNATRSPSCSPLFLDCDSLEQPERRAWLKVTHVLINCDAFNNDKNFEFGMFADAFTDEVASSKFFEKYFYCLWWGLKSLSAYGQNLTTSTYMGEVLFSILICTTGLVLFSHLIGQVQSYLQSTSARLEEWRIKRRDTEEWMRRRQLPVHLQERVRRFVQYKWIATRGVDEESILRNLPLDLRRQIQRHLSLALVRRVPFFAQMDAQLLDAICERLVSSLNTKDTYIVREGDPVNEMHFIIRGQLESSTTNGGRSGFFNSITLRPGDFCGEELLTWALVPSPSLSFPSSTRTVKSLTEVEAFALQAEDLKFVASQFKRLHSKKLQHAFRYYSHQWRTWGACFMQAAWRRYVKRKLAMELARQEELYYTTIMDQDQSHGSEMEGEGDGETSGSKNGSVSKPQNLGVTMLASKFAATTRKGIAQKLSGLDSDATSLKMPKLFKPDEPDFSAFHEG 691
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4957895 4962593 + MC09g0543 Mch9g0659 697541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g0659 691 MobiDBLite consensus disorder prediction 675 691 - -
Mch9g0659 691 SMART cnmp_10 438 569 IPR000595 -
Mch9g0659 691 FunFam Cyclic nucleotide-gated ion channel 1 436 554 - -
Mch9g0659 691 Pfam Ion transport protein 39 365 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch9g0659 691 ProSiteProfiles cAMP/cGMP binding motif profile. 438 568 IPR000595 -
Mch9g0659 691 Gene3D - 42 362 - -
Mch9g0659 691 SUPERFAMILY Voltage-gated potassium channels 31 360 - -
Mch9g0659 691 MobiDBLite consensus disorder prediction 614 639 - -
Mch9g0659 691 Gene3D Jelly Rolls 436 556 IPR014710 -
Mch9g0659 691 CDD CAP_ED 438 569 IPR000595 -
Mch9g0659 691 MobiDBLite consensus disorder prediction 672 691 - -
Mch9g0659 691 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 24 660 - -
Mch9g0659 691 Pfam Cyclic nucleotide-binding domain 461 549 IPR000595 -
Mch9g0659 691 SUPERFAMILY cAMP-binding domain-like 367 563 IPR018490 -
Mch9g0659 691 Gene3D Helix hairpin bin 364 428 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g0161 Mch-Chr6:1077001 Mch9g0659 Mch-Chr9:4957895 4.58E-27 dispersed
Mch6g0569 Mch-Chr6:3847913 Mch9g0659 Mch-Chr9:4957895 7.09E-285 dispersed
Mch8g2727 Mch-Chr8:30492069 Mch9g0659 Mch-Chr9:4957895 1.06E-220 dispersed
Mch9g0659 Mch-Chr9:4957895 Mch8g1531 Mch-Chr8:11952081 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g0659 K05391 - csv:101209760 1189.48