Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch9g0661 | GCCATGAAAGATACCGGAAGTCTGGACTTCACCGCCGACAGAGTTCTCGCGAAGGATTTCCTCTCAAACTTCGCCGATTCAAATGGTGAAGCGAAGTACTTAAGCATTCTGCAAGAGGTTGCAAATCGCAGAGTCCGTGCAATTCAAATCGACCTCGAGGATCTCTTTAATTACAAGGACTTGGATGAGGATTTCCTCAGACGTATTACTGAAAACACCCGGCGGTATATTGGAATTTTTGCCGATGCTATTGATGAGCTCATGCCAGAGCCAACAGAGGCGTTTGTAGACGATGATCATGACATATTAATGACACAAAGGTCTGATGATGGACCGGATACTGTTGATAACCCAGATCCACGCCAAAGAATGCCTCCAGAAATCAAACGATACTTTGAAGTTTACATTAGAGCATCTACAAAGGGTCATCCATTTACCATAAGAGAGGTCAGAGCGTCAAATATTGGCCAACTTGTGAGGATATCTGGTATTGTGACACGCTGTTCAGATGTTAAGCCATTGATGCAAGTGGCAGTTTATACGTGTGAAGACTGTGGTTTTGAGATATATCAGGAGGTCACAGCTCGAGTCTTCATGCCTCTATTTGAGTGTCCTTCTCAGCGTTGTAGAACAAACCAAACGAAAGGCAACTTAATTCTACAACTTAGAGCATCCAAATTTCTGAAGTTTCAGGAGGCTAAAATTCAAGAGTTAGCCGAGCATGTTCCAAAAGGTCATATTCCCCGATCAATGACTGTTCATCTCAGGGGTGAATTAACGAGGAAGGTAGCTCCAGGTGATGTTGTTGAACTATCAGGGATTTTTCTTCCTATGCCTTATACAGGTTTCAGGGCAATGCGTGCTGGTTTGGTTGCTGATACATTCTTAGAGGCCATGTCTATCACTCATTTCAAGAAAAAATATGAGGAGTATGAACTTAGAGGAGATGAGGAGGAGCAAATTGCACGTTTGGCTGAAGATGGTGATATTTACAATAAACTGGCCCGATCATTGGCACCTGAAATTTTTGGGCATGAAGATATTAAAAAAGCTCTACTGCTTCTCCTTGTTGGTGCTCCTCATAGAAAGTTGAAAGATGGGATGAAGATTAGAGGAGACTTGCATATATGTTTGATGGGTGATCCTGGAGTTGCAAAGAGTCAACTTCTTAAACACATCATTAATGTTGCTCCCAGGGGAGTCTACACAACTGGCAAGGGAAGCAGTGGTGTTGGTCTAACTGCTGCTGTTCAGAAGGATCCTGTAACGAATGAGATGGTTCTTGAAGGAGGGGCTTTGGTGTTAGCTGATATGGGTATATGTGCAATTGATGAATTTGACAAGATGGAAGAATCTGACCGTACAGCAATACATGAAGTCATGGAGCAACAGACTGTAAGTATTGCCAAGGCTGGGATCACGACGTCTCTGAATGCCAGGACTGCCATTCTTGCTGCAGCCAACCCAGCATGGGGAAGATACGACCTCCGCAGAACTCCAGCTGAGAACATTAATCTTCCTCCAGCCCTATTATCAAGATTTGATCTTCTTTGGTTGATCCTAGATCGAGCTGATTTGGATAATGATCTTGAAATGGCTAGGCATGTTGTTTATGTCCATCAGAATAAAGAATCTCCTGCACTTGGCTTCACTCCACTTGAATCATCCGTTCTACGAGCTTATATTTCAGCTGCAAGAAGATTGGCTCCTCACGTTCCCAGGGATCTGGAGGAGTACATTGCCAGTGCCTATTCCAGCATTCGACAGGAAGAAGCTAAATCTAATACTCCCCATTCTTATACCACAGTGAGAACTCTACTGAGCATTCTCCGGATATCAGCTGCTCTAGCAAGGCTTAGATTCTCTGAAACCGTGGCTCAGAGTGACGTTGATGAGGCTCTGAGGTTAATGCAGATGTCAAAATTTTCTTTATACTCAGATGACCGTCAAAAATCTGGTCTAGATGCTATCTCAGATATCTATTCAATCTTGCGTGACGAAGCTGCCAGAAGTAAGAAAATGGATGTGAGCTATGCACACGCACTTAACTGGATTTCTAGGAAGGGATACAGCGAAGCTCAACTGAAAGAGTGTTTGGAGGAGTATGCAGCCTTGAATGTGTGGCAAATACATCCACACACCTTTGACATTCGGTTTATAGATGCTTGA | 2169 | 43.52 | AMKDTGSLDFTADRVLAKDFLSNFADSNGEAKYLSILQEVANRRVRAIQIDLEDLFNYKDLDEDFLRRITENTRRYIGIFADAIDELMPEPTEAFVDDDHDILMTQRSDDGPDTVDNPDPRQRMPPEIKRYFEVYIRASTKGHPFTIREVRASNIGQLVRISGIVTRCSDVKPLMQVAVYTCEDCGFEIYQEVTARVFMPLFECPSQRCRTNQTKGNLILQLRASKFLKFQEAKIQELAEHVPKGHIPRSMTVHLRGELTRKVAPGDVVELSGIFLPMPYTGFRAMRAGLVADTFLEAMSITHFKKKYEEYELRGDEEEQIARLAEDGDIYNKLARSLAPEIFGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGKGSSGVGLTAAVQKDPVTNEMVLEGGALVLADMGICAIDEFDKMEESDRTAIHEVMEQQTVSIAKAGITTSLNARTAILAAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADLDNDLEMARHVVYVHQNKESPALGFTPLESSVLRAYISAARRLAPHVPRDLEEYIASAYSSIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQMSKFSLYSDDRQKSGLDAISDIYSILRDEAARSKKMDVSYAHALNWISRKGYSEAQLKECLEEYAALNVWQIHPHTFDIRFIDA | 722 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 4967950 | 4974168 | + | MC09g0545 | Mch9g0661 | 697543 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch9g0661 | 722 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 16 | 692 | IPR031327 | GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006268(PANTHER)|GO:0006270(PANTHER)|GO:0006271(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER) | |
| Mch9g0661 | 722 | CDD | MCM7 | 333 | 640 | IPR008050 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Mch9g0661 | 722 | Pfam | MCM P-loop domain | 318 | 540 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Mch9g0661 | 722 | FunFam | DNA replication licensing factor MCM7 | 315 | 647 | - | - | |
| Mch9g0661 | 722 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 431 | 445 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Mch9g0661 | 722 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 371 | 386 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Mch9g0661 | 722 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 483 | 495 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Mch9g0661 | 722 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 510 | 518 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Mch9g0661 | 722 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 459 | 472 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Mch9g0661 | 722 | ProSiteProfiles | MCM family domain profile. | 330 | 536 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Mch9g0661 | 722 | ProSitePatterns | MCM family signature. | 439 | 447 | IPR018525 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro) | |
| Mch9g0661 | 722 | PRINTS | Mini-chromosome maintenance (MCM) protein 7 signature | 124 | 136 | IPR008050 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Mch9g0661 | 722 | PRINTS | Mini-chromosome maintenance (MCM) protein 7 signature | 197 | 209 | IPR008050 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Mch9g0661 | 722 | PRINTS | Mini-chromosome maintenance (MCM) protein 7 signature | 289 | 299 | IPR008050 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Mch9g0661 | 722 | PRINTS | Mini-chromosome maintenance (MCM) protein 7 signature | 162 | 173 | IPR008050 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Mch9g0661 | 722 | PRINTS | Mini-chromosome maintenance (MCM) protein 7 signature | 180 | 191 | IPR008050 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Mch9g0661 | 722 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 340 | 651 | IPR027417 | - | |
| Mch9g0661 | 722 | Gene3D | - | 174 | 228 | - | - | |
| Mch9g0661 | 722 | FunFam | DNA replication licensing factor MCM7 | 13 | 104 | - | - | |
| Mch9g0661 | 722 | SUPERFAMILY | Nucleic acid-binding proteins | 17 | 298 | IPR012340 | - | |
| Mch9g0661 | 722 | Gene3D | - | 315 | 647 | IPR027417 | - | |
| Mch9g0661 | 722 | SMART | mcm | 143 | 642 | IPR031327 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Mch9g0661 | 722 | Pfam | MCM OB domain | 147 | 278 | IPR033762 | - | |
| Mch9g0661 | 722 | Gene3D | - | 14 | 104 | - | - | |
| Mch9g0661 | 722 | Pfam | MCM N-terminal domain | 18 | 135 | IPR027925 | - | |
| Mch9g0661 | 722 | Pfam | MCM AAA-lid domain | 557 | 640 | IPR041562 | - | |
| Mch9g0661 | 722 | Gene3D | - | 147 | 276 | IPR012340 | - | |
| Mch9g0661 | 722 | FunFam | DNA replication licensing factor MCM7 | 174 | 228 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch1g2016 | Mch-Chr1:19661197 | Mch9g0661 | Mch-Chr9:4967950 | 1.05E-104 | dispersed | |
| Mch4g0567 | Mch-Chr4:3605314 | Mch9g0661 | Mch-Chr9:4967950 | 1.22E-108 | dispersed | |
| Mch8g3014 | Mch-Chr8:32749499 | Mch9g0661 | Mch-Chr9:4967950 | 1.01E-90 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mch9g0661 | K02210 | - | csv:101219064 | 1360.9 |